Wall clock time and date at job start Mon Mar 30 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.86478 * 20.33317 * 4 3 2 6 6 C 1.53864 * 113.63556 * 249.06198 * 4 3 2 7 7 C 1.53858 * 87.16414 * 270.57721 * 6 4 3 8 8 H 1.09005 * 113.63712 * 220.30318 * 7 6 4 9 9 N 1.46503 * 113.63753 * 89.42312 * 7 6 4 10 10 C 1.36936 * 119.99934 * 104.50026 * 9 7 6 11 11 H 1.08001 * 120.00119 * 0.02562 * 10 9 7 12 12 C 1.38814 * 120.00062 * 180.02562 * 10 9 7 13 13 N 1.31623 * 119.99688 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00325 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47178 * 89.99491 * 14 12 10 16 16 H 1.48489 * 109.47165 * 209.99853 * 14 12 10 17 17 H 1.48497 * 109.46940 * 329.99840 * 14 12 10 18 18 C 1.53318 * 113.63627 * 151.59853 * 4 3 2 19 19 C 1.52826 * 113.61840 * 334.53551 * 18 4 3 20 20 C 1.53273 * 108.87620 * 282.21638 * 19 18 4 21 21 O 1.42898 * 109.33143 * 304.68289 * 20 19 18 22 22 C 1.42896 * 114.35006 * 63.00074 * 21 20 19 23 23 C 1.52836 * 113.61743 * 204.12835 * 18 4 3 24 24 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 29 29 H 1.08997 * 113.59879 * 25.15315 * 6 4 3 30 30 H 1.08998 * 113.59523 * 156.00313 * 6 4 3 31 31 H 0.96994 * 119.99972 * 284.50987 * 9 7 6 32 32 H 0.96999 * 119.99680 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.57334 * 42.03111 * 19 18 4 34 34 H 1.09000 * 109.57352 * 162.39758 * 19 18 4 35 35 H 1.09000 * 109.49235 * 184.72972 * 20 19 18 36 36 H 1.08996 * 109.52245 * 64.65804 * 20 19 18 37 37 H 1.08997 * 109.49353 * 177.05131 * 22 21 20 38 38 H 1.08994 * 109.52107 * 56.97407 * 22 21 20 39 39 H 1.09000 * 109.57060 * 197.60229 * 23 18 4 40 40 H 1.08996 * 109.56472 * 317.84485 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9273 0.5547 -0.3499 6 6 4.0066 2.0107 1.3157 7 6 3.8503 3.4153 0.7076 8 1 4.6839 4.0822 0.9278 9 7 2.5461 4.0281 0.9719 10 6 2.4330 5.0200 1.9092 11 1 3.3053 5.3509 2.4532 12 6 1.1971 5.6002 2.1601 13 7 0.1341 5.1972 1.4967 14 14 1.0429 6.9538 3.4381 15 1 1.2527 8.2731 2.7896 16 1 -0.3119 6.9101 4.0443 17 1 2.0654 6.7542 4.4963 18 6 3.9458 2.7404 -0.6687 19 6 2.9840 3.3193 -1.7057 20 6 3.0962 2.5015 -2.9971 21 8 4.4586 2.4815 -3.4275 22 6 5.3553 1.8440 -2.5156 23 6 5.3756 2.6234 -1.1959 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3655 1.8353 2.1796 30 1 5.0434 1.7244 1.4920 31 1 1.7627 3.7310 0.4832 32 1 -0.7295 5.6024 1.6722 33 1 1.9633 3.2656 -1.3270 34 1 3.2464 4.3579 -1.9073 35 1 2.4771 2.9561 -3.7705 36 1 2.7578 1.4818 -2.8131 37 1 6.3577 1.8269 -2.9433 38 1 5.0214 0.8232 -2.3301 39 1 5.7845 3.6193 -1.3663 40 1 5.9912 2.0956 -0.4676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367016530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:53 Heat of formation + Delta-G solvation = -60.654087 kcal Electronic energy + Delta-G solvation = -20701.899667 eV Core-core repulsion = 17710.791969 eV Total energy + Delta-G solvation = -2991.107698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41213 -37.64749 -36.03661 -33.31443 -31.02532 -30.80363 -30.54785 -29.16069 -24.69050 -23.81785 -23.60451 -22.42189 -22.26261 -20.43081 -17.91053 -17.29356 -16.18463 -15.82187 -15.70079 -15.27589 -14.80094 -14.52520 -14.09460 -13.73087 -13.51626 -12.98883 -12.83064 -12.70333 -12.18607 -11.94190 -11.90231 -11.62221 -11.17834 -10.96481 -10.89196 -10.84989 -10.76599 -10.61636 -10.21614 -10.11435 -9.87658 -9.62186 -9.54971 -8.98928 -8.80668 -8.69466 -6.85191 -5.69505 -2.96953 3.46732 3.51815 3.53399 3.94321 4.12732 4.61932 4.91410 5.07545 5.14603 5.26489 5.34004 5.36141 5.44231 5.50776 5.51484 5.59700 5.61607 5.71550 5.76692 5.81869 5.89024 5.99552 6.07758 6.11015 6.19747 6.23633 6.35193 6.39000 6.47001 6.57759 6.72906 6.88795 7.02812 7.06437 7.47114 7.75916 7.80878 8.50240 9.61578 10.23120 10.60135 11.52488 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.007546 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.273026 B = 3709.514485 C = 4317.696772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.344 6.344 4 C 0.080 3.920 5 H 0.053 0.947 6 C -0.199 4.199 7 C 0.187 3.813 8 H 0.058 0.942 9 N -0.696 5.696 10 C -0.239 4.239 11 H 0.069 0.931 12 C -0.012 4.012 13 N -0.928 5.928 14 Si 0.905 3.095 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 C -0.100 4.100 19 C -0.124 4.124 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.065 3.935 23 C -0.126 4.126 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.394 0.606 32 H 0.254 0.746 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 -10.860 -6.547 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.263 6.263 4 C 0.022 3.978 5 H 0.071 0.929 6 C -0.241 4.241 7 C 0.074 3.926 8 H 0.076 0.924 9 N -0.336 5.336 10 C -0.371 4.371 11 H 0.087 0.913 12 C -0.208 4.208 13 N -0.576 5.576 14 Si 0.736 3.264 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.209 1.209 18 C -0.102 4.102 19 C -0.161 4.161 20 C -0.012 4.012 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.164 4.164 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.231 0.769 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.102 -10.456 -6.577 14.248 hybrid contribution -0.333 0.163 0.983 1.051 sum 6.769 -10.292 -5.593 13.529 Atomic orbital electron populations 1.21706 0.93881 1.01330 1.03788 1.22405 0.95599 0.84767 0.98873 1.88032 1.19264 1.24614 1.94348 1.22887 0.81742 0.95822 0.97346 0.92872 1.24386 0.99282 1.02497 0.97923 1.20989 0.90454 0.90927 0.90251 0.92411 1.42200 1.04037 1.41566 1.45773 1.19270 0.93819 1.10742 1.13251 0.91340 1.24724 0.95698 1.00226 1.00173 1.69689 0.98835 1.44903 1.44126 0.86221 0.76794 0.82134 0.81223 1.21810 1.21873 1.20878 1.22414 0.94238 0.96481 0.97072 1.21779 1.01524 0.99308 0.93526 1.22640 0.82212 0.99240 0.97126 1.87836 1.18253 1.79710 1.45026 1.22524 0.93733 0.94893 0.90073 1.21881 0.95630 1.01868 0.96992 0.91895 0.91903 0.91315 0.94466 0.94083 0.90801 0.91041 0.76894 0.93644 0.88933 0.91362 0.89445 0.93825 0.89410 0.93880 0.90452 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 37.16 0.38 -1.70 16 2 C 0.06 0.89 6.50 37.16 0.24 1.13 16 3 O -0.34 -6.37 7.76 -35.23 -0.27 -6.64 16 4 C 0.08 1.35 3.60 -26.12 -0.09 1.25 16 5 H 0.05 0.78 7.37 -51.93 -0.38 0.39 16 6 C -0.20 -3.60 7.37 -25.84 -0.19 -3.79 16 7 C 0.19 3.85 4.01 -67.18 -0.27 3.58 16 8 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 9 N -0.70 -17.80 4.74 -52.69 -0.25 -18.05 16 10 C -0.24 -6.76 9.98 -15.06 -0.15 -6.91 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 13 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 14 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C -0.10 -1.71 0.72 -154.22 -0.11 -1.82 16 19 C -0.12 -2.24 4.62 -26.68 -0.12 -2.37 16 20 C 0.06 0.99 6.78 37.30 0.25 1.24 16 21 O -0.39 -6.01 10.72 -35.23 -0.38 -6.39 16 22 C 0.06 0.83 6.78 37.30 0.25 1.08 16 23 C -0.13 -1.75 5.24 -26.67 -0.14 -1.89 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.07 1.09 7.65 -51.93 -0.40 0.69 16 31 H 0.39 10.73 5.23 -40.82 -0.21 10.52 16 32 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.09 1.94 5.60 -51.93 -0.29 1.65 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.52 7.67 -51.93 -0.40 0.12 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.88 7.35 -51.93 -0.38 0.50 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -30.94 313.16 -7.20 -38.15 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.68 Total: 8.73 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.05 Total: -10.64 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.47 Total: -45.61 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.65 Total: -13.03 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.94 -7.20 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367016530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.505 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds