Wall clock time and date at job start Mon Mar 30 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99850 * 2 1 4 4 C 1.53002 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47087 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.33101 * 304.65094 * 5 4 3 7 7 C 1.47095 * 109.32678 * 184.99848 * 5 4 3 8 8 C 1.52570 * 114.32519 * 177.10833 * 7 5 4 9 9 C 1.50886 * 109.35199 * 85.02433 * 8 7 5 10 10 C 1.53945 * 110.09094 * 268.10741 * 9 8 7 11 11 N 1.47608 * 112.14370 * 40.56917 * 10 9 8 12 12 C 1.34780 * 118.64189 * 222.13333 * 11 10 9 13 13 O 1.21685 * 120.00098 * 354.79543 * 12 11 10 14 14 C 1.46371 * 119.99688 * 174.80136 * 12 11 10 15 15 H 1.07999 * 120.00655 * 4.99257 * 14 12 11 16 16 C 1.40053 * 119.99753 * 184.99241 * 14 12 11 17 17 N 1.30676 * 120.00018 * 184.99188 * 16 14 12 18 18 Si 1.86802 * 120.00099 * 4.98922 * 16 14 12 19 19 H 1.48501 * 109.47103 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47201 * 300.00364 * 18 16 14 21 21 H 1.48499 * 109.46820 * 60.00239 * 18 16 14 22 22 C 1.44581 * 122.71554 * 42.40058 * 11 10 9 23 23 H 1.08994 * 109.47057 * 300.00005 * 1 2 3 24 24 H 1.09000 * 109.46796 * 60.00488 * 1 2 3 25 25 H 1.08995 * 109.46977 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47170 * 59.99694 * 3 2 1 27 27 H 1.09005 * 109.46836 * 299.99660 * 3 2 1 28 28 H 1.09007 * 109.46647 * 59.99729 * 4 3 2 29 29 H 1.08997 * 109.46842 * 300.00439 * 4 3 2 30 30 H 1.08993 * 108.51453 * 55.85572 * 7 5 4 31 31 H 1.09004 * 108.51558 * 298.36082 * 7 5 4 32 32 H 1.08996 * 109.49462 * 325.05785 * 8 7 5 33 33 H 1.09004 * 109.50670 * 204.99606 * 8 7 5 34 34 H 1.09001 * 109.36146 * 147.92410 * 9 8 7 35 35 H 1.08998 * 109.36674 * 28.30352 * 9 8 7 36 36 H 1.08997 * 108.95076 * 279.87898 * 10 9 8 37 37 H 1.09007 * 108.87347 * 161.20073 * 10 9 8 38 38 H 0.97003 * 119.99636 * 355.00029 * 17 16 14 39 39 H 1.09009 * 109.44592 * 29.04879 * 22 11 10 40 40 H 1.08997 * 109.44984 * 148.95689 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7706 3.1493 -0.8466 7 6 5.6190 2.4647 -0.1203 8 6 6.3525 3.8000 -0.2024 9 6 6.6032 4.3193 1.1920 10 6 5.4455 5.2338 1.6318 11 7 4.1311 4.7066 1.2158 12 6 3.2175 5.5654 0.7216 13 8 3.4476 6.7603 0.7134 14 6 1.9485 5.0609 0.1947 15 1 1.7098 4.0107 0.2751 16 6 1.0439 5.9400 -0.4137 17 7 -0.1291 5.5092 -0.7961 18 14 1.5139 7.7284 -0.6784 19 1 0.3905 8.4434 -1.3357 20 1 1.8046 8.3631 0.6323 21 1 2.7200 7.8006 -1.5417 22 6 3.7811 3.3078 1.3219 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8574 0.6435 -0.8892 29 1 3.8567 0.6439 0.8908 30 1 5.8472 1.8889 -1.0172 31 1 5.9944 1.9162 0.7436 32 1 5.7431 4.5164 -0.7532 33 1 7.3041 3.6616 -0.7155 34 1 7.5352 4.8843 1.2050 35 1 6.6823 3.4790 1.8818 36 1 5.5868 6.2205 1.1907 37 1 5.4622 5.3262 2.7178 38 1 -0.3462 4.5665 -0.7253 39 1 4.3273 2.8589 2.1516 40 1 2.7099 3.2142 1.5003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369020068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:14 Heat of formation + Delta-G solvation = -133.701689 kcal Electronic energy + Delta-G solvation = -20478.445082 eV Core-core repulsion = 17484.169802 eV Total energy + Delta-G solvation = -2994.275280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00312 -39.10018 -38.25788 -35.45374 -34.87600 -34.42564 -30.85082 -28.66406 -27.52610 -26.85848 -26.00303 -23.56962 -22.13745 -21.20475 -20.54618 -19.32785 -17.87001 -17.41326 -17.19907 -16.75405 -16.13463 -16.08721 -15.73760 -15.33415 -14.81110 -14.75240 -14.59580 -14.20165 -13.93408 -13.88899 -13.24891 -13.16336 -12.75400 -12.51656 -12.50387 -12.30771 -12.10229 -12.03636 -11.71730 -11.50562 -11.34051 -11.27308 -11.16907 -11.11831 -10.65014 -9.99194 -9.25651 -9.15565 -7.05811 1.41285 1.52040 1.93612 2.19745 2.37097 2.68442 2.79270 3.31880 3.75612 3.85480 3.97117 4.08575 4.11590 4.23932 4.31649 4.42450 4.45642 4.47422 4.53543 4.67361 4.69425 4.77142 4.77761 4.88406 4.91945 5.01886 5.06440 5.11559 5.18205 5.31096 5.41172 5.41898 5.46676 5.59533 5.61868 5.93569 6.14382 6.22778 6.68285 7.07315 8.01167 8.15161 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.010510 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.584938 B = 2663.585798 C = 4340.526134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.062 3.938 4 C -0.095 4.095 5 C -0.095 4.095 6 H 0.043 0.957 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.117 4.117 10 C 0.113 3.887 11 N -0.624 5.624 12 C 0.540 3.460 13 O -0.648 6.648 14 C -0.605 4.605 15 H 0.085 0.915 16 C 0.031 3.969 17 N -0.848 5.848 18 Si 1.157 2.843 19 H -0.311 1.311 20 H -0.299 1.299 21 H -0.300 1.300 22 C 0.132 3.868 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.110 0.890 26 H 0.043 0.957 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.276 0.724 39 H 0.085 0.915 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.250 -11.519 2.680 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.014 4.014 4 C -0.132 4.132 5 C -0.115 4.115 6 H 0.061 0.939 7 C -0.140 4.140 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.010 4.010 11 N -0.355 5.355 12 C 0.348 3.652 13 O -0.544 6.544 14 C -0.641 4.641 15 H 0.103 0.897 16 C -0.184 4.184 17 N -0.477 5.477 18 Si 0.990 3.010 19 H -0.242 1.242 20 H -0.228 1.228 21 H -0.228 1.228 22 C 0.009 3.991 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.128 0.872 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.922 -9.801 2.187 13.433 hybrid contribution -0.231 -1.065 0.419 1.168 sum 8.691 -10.865 2.606 14.156 Atomic orbital electron populations 1.22900 0.80035 1.03923 1.00185 1.87763 1.20995 1.28352 1.95513 1.22618 0.95462 0.83833 0.99513 1.21418 0.91523 0.96277 1.04022 1.20777 0.97259 0.95124 0.98314 0.93853 1.20396 0.93182 0.97264 1.03190 1.21023 1.00164 0.96830 0.97181 1.21733 0.96887 0.99810 0.97086 1.21708 0.82948 0.97860 0.98445 1.47246 1.13835 1.07888 1.66491 1.18584 0.85095 0.84689 0.76799 1.90087 1.80639 1.17931 1.65742 1.22385 1.02724 0.98201 1.40830 0.89741 1.27588 0.91362 1.09627 0.89785 1.70678 1.19581 1.18490 1.38974 0.81980 0.71936 0.70924 0.76154 1.24199 1.22786 1.22818 1.21608 1.00130 0.80419 0.96982 0.94084 0.94450 0.87208 0.93893 0.95240 0.90404 0.89470 0.91503 0.90126 0.95269 0.90018 0.89386 0.89805 0.92839 0.92800 0.91303 0.89631 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -12.36 10.70 -148.98 -1.59 -13.95 16 3 C 0.06 2.00 5.12 71.98 0.37 2.36 16 4 C -0.09 -2.55 5.00 30.59 0.15 -2.40 16 5 C -0.09 -2.91 1.99 -11.80 -0.02 -2.93 16 6 H 0.04 1.69 7.88 -2.39 -0.02 1.68 16 7 C -0.10 -2.53 4.38 28.62 0.13 -2.40 16 8 C -0.11 -3.04 5.51 29.76 0.16 -2.88 16 9 C -0.12 -2.89 5.71 30.23 0.17 -2.72 16 10 C 0.11 3.94 6.07 86.49 0.52 4.46 16 11 N -0.62 -26.03 2.23 -822.11 -1.83 -27.86 16 12 C 0.54 28.70 7.38 86.36 0.64 29.34 16 13 O -0.65 -37.93 11.37 -4.30 -0.05 -37.98 16 14 C -0.60 -33.38 8.78 24.83 0.22 -33.16 16 15 H 0.08 4.47 5.22 -2.91 -0.02 4.45 16 16 C 0.03 1.78 5.52 85.31 0.47 2.25 16 17 N -0.85 -48.46 13.65 21.84 0.30 -48.16 16 18 Si 1.16 62.02 25.98 68.60 1.78 63.81 16 19 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 20 H -0.30 -16.79 6.79 99.48 0.68 -16.11 16 21 H -0.30 -16.29 7.11 99.48 0.71 -15.58 16 22 C 0.13 4.57 4.28 87.57 0.37 4.94 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.47 5.98 -2.39 -0.01 1.46 16 27 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.95 8.09 -2.38 -0.02 1.93 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 31 H 0.08 1.60 7.37 -2.39 -0.02 1.59 16 32 H 0.03 1.02 7.48 -2.39 -0.02 1.00 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.70 7.32 -2.39 -0.02 1.69 16 36 H 0.05 2.16 7.02 -2.39 -0.02 2.15 16 37 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.28 15.16 8.72 -92.71 -0.81 14.35 16 39 H 0.09 2.40 8.07 -2.38 -0.02 2.38 16 40 H 0.06 2.30 4.17 -2.39 -0.01 2.29 16 Total: -1.00 -67.35 306.21 3.98 -63.37 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 0.94 Total: 2.02 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.43 Total: -1.24 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.53 Total: -76.02 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -1.64 Total: -51.93 kcal Atomic # 14 Polarization: 62.02 SS G_CDS: 1.78 Total: 63.81 kcal Total: -67.35 3.98 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369020068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.333 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds