Wall clock time and date at job start Mon Mar 30 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00424 * 2 1 4 4 H 1.48502 * 109.46948 * 270.00176 * 3 2 1 5 5 H 1.48501 * 109.46933 * 29.99322 * 3 2 1 6 6 H 1.48491 * 109.47533 * 149.99743 * 3 2 1 7 7 C 1.37878 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99779 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00677 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47436 * 180.02562 * 9 7 2 11 11 C 1.46963 * 111.00027 * 293.79676 * 10 9 7 12 12 C 1.53050 * 109.36628 * 176.81053 * 11 10 9 13 13 N 1.46954 * 109.36358 * 58.40443 * 12 11 10 14 14 C 1.46896 * 111.00094 * 176.81251 * 13 12 11 15 15 H 1.08998 * 110.63128 * 68.84963 * 14 13 12 16 16 C 1.54323 * 110.70346 * 305.74768 * 14 13 12 17 17 N 1.47445 * 107.23134 * 219.33176 * 16 14 13 18 18 C 1.47850 * 108.56865 * 359.01468 * 17 16 14 19 19 C 1.54909 * 104.79495 * 24.09030 * 18 17 16 20 20 H 1.09000 * 110.98517 * 81.02875 * 19 18 17 21 21 O 1.42901 * 110.98928 * 204.83897 * 19 18 17 22 22 C 1.46958 * 110.87962 * 300.68172 * 13 12 11 23 23 C 1.46958 * 111.00046 * 170.00417 * 10 9 7 24 24 H 0.97005 * 119.99862 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46807 * 59.99910 * 9 7 2 26 26 H 1.08999 * 109.47073 * 300.00329 * 9 7 2 27 27 H 1.08997 * 109.49019 * 296.78143 * 11 10 9 28 28 H 1.09003 * 109.48297 * 56.84545 * 11 10 9 29 29 H 1.09005 * 109.48845 * 298.43604 * 12 11 10 30 30 H 1.09000 * 109.50802 * 178.38676 * 12 11 10 31 31 H 1.08994 * 109.89150 * 338.73595 * 16 14 13 32 32 H 1.08999 * 109.88469 * 99.93339 * 16 14 13 33 33 H 1.00896 * 111.00252 * 236.74500 * 17 16 14 34 34 H 1.08999 * 110.37214 * 142.92136 * 18 17 16 35 35 H 1.09005 * 110.37093 * 265.15230 * 18 17 16 36 36 H 0.96698 * 113.99565 * 292.27172 * 21 19 18 37 37 H 1.08997 * 109.48696 * 299.35092 * 22 13 12 38 38 H 1.09005 * 109.50529 * 179.30053 * 22 13 12 39 39 H 1.08998 * 109.48481 * 303.15352 * 23 10 9 40 40 H 1.08996 * 109.49377 * 63.21690 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 3.6543 -3.2604 1.2561 12 6 4.1105 -4.7196 1.1843 13 7 5.5600 -4.7657 0.9466 14 6 6.0496 -6.1507 0.9465 15 1 5.6805 -6.6885 0.0733 16 6 5.6397 -6.8744 2.2464 17 7 6.7790 -7.7161 2.6556 18 6 7.8595 -7.5633 1.6580 19 6 7.5997 -6.1845 1.0015 20 1 7.9861 -5.3770 1.6234 21 8 8.1599 -6.1292 -0.3119 22 6 5.9069 -4.0843 -0.3084 23 6 5.4506 -2.6252 -0.2366 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 4.1523 -2.7642 2.0890 28 1 2.5748 -3.2238 1.4034 29 1 3.5920 -5.2230 0.3683 30 1 3.8801 -5.2197 2.1250 31 1 5.4206 -6.1433 3.0246 32 1 4.7648 -7.4981 2.0634 33 1 6.5018 -8.6823 2.7431 34 1 8.8329 -7.5727 2.1485 35 1 7.8031 -8.3569 0.9129 36 1 9.1265 -6.1477 -0.3283 37 1 5.4088 -4.5806 -1.1412 38 1 6.9863 -4.1210 -0.4561 39 1 5.6809 -2.1255 -1.1775 40 1 5.9691 -2.1217 0.5793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378749277.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:05 Heat of formation + Delta-G solvation = -22.181611 kcal Electronic energy + Delta-G solvation = -19837.333768 eV Core-core repulsion = 16880.187113 eV Total energy + Delta-G solvation = -2957.146655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85072 -37.93354 -35.81744 -34.64345 -32.37762 -30.54321 -29.50478 -28.34517 -27.27868 -24.46356 -23.36182 -21.31965 -21.19532 -20.41040 -19.28416 -17.81611 -16.90389 -16.66135 -16.00204 -14.83802 -14.52530 -14.45744 -14.30055 -14.29991 -13.70693 -13.43404 -13.19620 -12.99365 -12.81885 -12.56361 -12.21571 -11.81076 -11.73151 -11.44542 -11.01922 -10.85828 -10.76139 -10.49058 -10.39255 -10.25920 -9.96692 -9.75972 -9.24114 -8.75865 -8.55378 -8.19511 -7.33069 -6.03956 -4.01143 3.30052 3.37344 3.40159 3.66124 3.81493 4.32132 4.43186 4.43730 4.56131 4.81763 4.91673 5.06008 5.25358 5.28786 5.33897 5.39143 5.53910 5.57160 5.72852 5.75820 5.81512 5.87554 5.89979 6.00692 6.23765 6.36383 6.49371 6.53532 6.65463 6.86089 6.98410 7.00377 7.21354 7.25048 7.40612 7.61961 7.94081 8.08222 8.67861 9.03897 9.58119 11.09156 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043398 B = 0.004576 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.038451 B = 6116.882880 C = 6512.788461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.530 5.530 11 C 0.068 3.932 12 C 0.055 3.945 13 N -0.528 5.528 14 C 0.071 3.929 15 H 0.054 0.946 16 C 0.052 3.948 17 N -0.677 5.677 18 C 0.015 3.985 19 C 0.101 3.899 20 H 0.083 0.917 21 O -0.558 6.558 22 C 0.064 3.936 23 C 0.054 3.946 24 H 0.263 0.737 25 H -0.011 1.011 26 H 0.023 0.977 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.341 0.659 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.378 0.622 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.298 -14.209 3.182 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.255 5.255 11 C -0.061 4.061 12 C -0.073 4.073 13 N -0.253 5.253 14 C -0.039 4.039 15 H 0.072 0.928 16 C -0.078 4.078 17 N -0.307 5.307 18 C -0.115 4.115 19 C 0.041 3.959 20 H 0.101 0.899 21 O -0.363 6.363 22 C -0.064 4.064 23 C -0.075 4.075 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.225 0.775 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.757 -13.585 3.476 21.093 hybrid contribution 0.578 0.383 -0.660 0.957 sum 16.335 -13.201 2.815 21.190 Atomic orbital electron populations 1.69893 1.06129 1.26819 1.51179 1.24892 0.94726 0.98852 0.94833 0.86859 0.80325 0.83998 0.78569 1.20176 1.21213 1.19261 1.21033 0.88743 0.94680 1.50252 0.90214 1.20154 0.97029 0.84144 0.95077 1.62112 1.10479 1.19040 1.33836 1.22017 1.01769 0.91522 0.90748 1.22300 0.86244 0.98395 1.00360 1.62260 1.14869 1.12749 1.35445 1.22748 0.93302 0.90486 0.97382 0.92802 1.22708 0.92438 0.96505 0.96106 1.61802 1.08875 1.13082 1.46981 1.23472 0.96448 0.97689 0.93857 1.22963 0.93532 0.95763 0.83645 0.89875 1.86545 1.25288 1.96917 1.27550 1.22154 1.00368 0.94315 0.89521 1.22135 0.90066 0.94983 1.00325 0.92686 0.99309 0.95854 0.95217 0.88945 0.94215 0.90745 0.88884 0.92506 0.84335 0.90098 0.93122 0.77492 0.94373 0.90158 0.91034 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.60 9.03 -34.44 -0.31 -14.91 16 8 H 0.08 2.48 7.37 -52.48 -0.39 2.09 16 9 C 0.16 4.03 3.79 -4.98 -0.02 4.01 16 10 N -0.53 -11.48 4.70 -235.91 -1.11 -12.59 16 11 C 0.07 1.34 5.43 -3.76 -0.02 1.32 16 12 C 0.05 0.88 5.30 -3.77 -0.02 0.86 16 13 N -0.53 -7.89 4.55 -224.31 -1.02 -8.91 16 14 C 0.07 0.89 2.39 -65.89 -0.16 0.73 16 15 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.05 0.56 6.04 -2.83 -0.02 0.54 16 17 N -0.68 -6.46 7.39 -110.78 -0.82 -7.28 16 18 C 0.02 0.14 7.31 -2.29 -0.02 0.12 16 19 C 0.10 1.07 3.50 -24.59 -0.09 0.99 16 20 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 21 O -0.56 -5.66 12.08 -35.23 -0.43 -6.09 16 22 C 0.06 1.02 5.37 -3.77 -0.02 1.00 16 23 C 0.05 0.98 5.61 -3.77 -0.02 0.96 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 26 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.00 6.79 -51.93 -0.35 1.65 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 31 H 0.09 1.12 7.21 -51.93 -0.37 0.75 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.34 2.60 8.91 -39.29 -0.35 2.25 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.38 2.10 9.12 45.56 0.42 2.51 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.17 6.36 -51.93 -0.33 0.84 16 39 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -32.01 306.61 -9.30 -41.30 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.86 Total: 1.33 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.79 Total: -2.48 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -2.17 Total: -55.75 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.43 Total: -6.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.01 -9.30 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378749277.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.123 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds