Wall clock time and date at job start Mon Mar 30 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00062 * 2 1 4 4 H 1.09001 * 109.52543 * 329.99776 * 3 2 1 5 5 C 1.53096 * 109.52615 * 90.12118 * 3 2 1 6 6 O 1.42906 * 109.41054 * 62.29570 * 5 3 2 7 7 C 1.42901 * 114.09713 * 61.16063 * 6 5 3 8 8 C 1.53088 * 109.41743 * 298.84109 * 7 6 5 9 9 C 1.53179 * 109.52176 * 209.87212 * 3 2 1 10 10 H 1.09000 * 109.54335 * 177.20464 * 9 3 2 11 11 N 1.46899 * 109.54153 * 56.93948 * 9 3 2 12 12 C 1.46905 * 110.99722 * 155.00157 * 11 9 3 13 13 C 1.53000 * 109.46855 * 174.73070 * 12 11 9 14 14 C 1.50695 * 115.55356 * 65.16581 * 13 12 11 15 15 H 1.07994 * 120.00412 * 265.06561 * 14 13 12 16 16 C 1.37885 * 119.99762 * 85.06610 * 14 13 12 17 17 N 1.31508 * 120.00133 * 353.17297 * 16 14 13 18 18 Si 1.86799 * 119.99939 * 173.17572 * 16 14 13 19 19 H 1.48494 * 109.47160 * 89.99561 * 18 16 14 20 20 H 1.48494 * 109.47074 * 210.00021 * 18 16 14 21 21 H 1.48501 * 109.47077 * 329.99708 * 18 16 14 22 22 C 1.53006 * 117.49701 * 279.49495 * 13 12 11 23 23 C 1.53006 * 117.49424 * 210.83750 * 13 12 11 24 24 H 1.09007 * 109.47657 * 300.00144 * 1 2 3 25 25 H 1.09001 * 109.47760 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47068 * 60.00226 * 1 2 3 27 27 H 1.08990 * 109.48111 * 182.27591 * 5 3 2 28 28 H 1.08998 * 109.47742 * 302.30648 * 5 3 2 29 29 H 1.09002 * 109.48179 * 58.82669 * 7 6 5 30 30 H 1.09006 * 109.48168 * 178.84207 * 7 6 5 31 31 H 1.08994 * 109.52657 * 177.51554 * 8 7 6 32 32 H 1.09007 * 109.52361 * 297.70340 * 8 7 6 33 33 H 1.00900 * 111.00330 * 31.05066 * 11 9 3 34 34 H 1.09000 * 109.46783 * 294.72515 * 12 11 9 35 35 H 1.08995 * 109.47175 * 54.72964 * 12 11 9 36 36 H 0.97001 * 120.00399 * 185.04984 * 17 16 14 37 37 H 1.09002 * 117.49362 * 0.02562 * 22 13 12 38 38 H 1.08994 * 117.49777 * 145.02189 * 22 13 12 39 39 H 1.09001 * 117.49787 * 214.97549 * 23 13 12 40 40 H 1.08999 * 117.49850 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3456 2.0001 -0.5137 5 6 2.2211 1.7716 1.4429 6 8 3.1369 0.8912 2.0974 7 6 4.4334 0.8472 1.4982 8 6 4.3114 0.3440 0.0575 9 6 3.3621 1.2638 -0.7191 10 1 3.7828 2.2684 -0.7629 11 7 3.1782 0.7462 -2.0815 12 6 4.2454 1.2200 -2.9730 13 6 4.0955 0.5581 -4.3443 14 6 2.8504 0.9242 -5.1102 15 1 1.9753 0.2941 -5.0513 16 6 2.8283 2.0638 -5.8862 17 7 3.8420 2.9010 -5.8539 18 14 1.3586 2.4184 -6.9832 19 1 0.3572 3.2129 -6.2276 20 1 1.8036 3.1863 -8.1739 21 1 0.7468 1.1379 -7.4204 22 6 4.6291 -0.8671 -4.5030 23 6 5.3716 0.3050 -5.1498 24 1 -0.3635 0.5139 0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 2.6268 2.7832 1.4424 28 1 1.2675 1.7626 1.9708 29 1 4.8681 1.8468 1.4985 30 1 5.0738 0.1723 2.0662 31 1 5.2934 0.3516 -0.4154 32 1 3.9145 -0.6712 0.0586 33 1 2.2690 0.9935 -2.4427 34 1 4.1739 2.3021 -3.0822 35 1 5.2152 0.9607 -2.5485 36 1 3.7957 3.7378 -6.3423 37 1 5.0865 -1.3332 -3.6303 38 1 4.0797 -1.5397 -5.1616 39 1 5.3103 0.4029 -6.2336 40 1 6.3177 0.6104 -4.7029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381902680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:30 Heat of formation + Delta-G solvation = -65.954941 kcal Electronic energy + Delta-G solvation = -20102.360150 eV Core-core repulsion = 17111.022590 eV Total energy + Delta-G solvation = -2991.337560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.70883 -36.88727 -36.74826 -34.59109 -31.91164 -30.72797 -30.19856 -26.41560 -25.84532 -24.91837 -23.33772 -22.42434 -20.92046 -19.78408 -19.00058 -16.53579 -16.34812 -16.02432 -15.76791 -15.31098 -14.97458 -14.61373 -13.97283 -13.90369 -13.72586 -13.52157 -12.88087 -12.54899 -12.39594 -12.10434 -11.62318 -11.41392 -11.18229 -11.04180 -10.97140 -10.85628 -10.46263 -10.42391 -10.27566 -10.08429 -9.89462 -9.43295 -8.95940 -8.72522 -8.40664 -8.02794 -7.44561 -6.02565 -4.08189 3.25545 3.34188 3.38448 3.78024 4.11140 4.38989 4.67325 4.79036 5.01691 5.12118 5.26275 5.32399 5.37771 5.44046 5.48348 5.51646 5.59854 5.66484 5.78581 5.83543 5.88716 6.07423 6.20117 6.23150 6.51619 6.60870 6.64962 6.87451 6.89973 6.95716 7.17668 7.20436 7.46310 7.55901 7.59500 7.88371 8.03822 8.31118 8.52309 8.95416 9.57093 11.05305 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.006306 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.959997 B = 4438.810538 C = 5026.569092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.043 3.957 6 O -0.375 6.375 7 C 0.061 3.939 8 C -0.138 4.138 9 C 0.090 3.910 10 H 0.046 0.954 11 N -0.664 5.664 12 C 0.106 3.894 13 C 0.052 3.948 14 C -0.492 4.492 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.198 4.198 23 C -0.163 4.163 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.347 0.653 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.258 0.742 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -0.884 12.697 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C -0.004 4.004 4 H 0.084 0.916 5 C -0.034 4.034 6 O -0.293 6.293 7 C -0.016 4.016 8 C -0.176 4.176 9 C -0.021 4.021 10 H 0.064 0.936 11 N -0.295 5.295 12 C -0.023 4.023 13 C 0.051 3.949 14 C -0.530 4.530 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.518 5.518 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.236 4.236 23 C -0.202 4.202 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.888 -1.609 12.838 13.075 hybrid contribution -1.124 1.735 -1.115 2.349 sum -3.013 0.126 11.723 12.105 Atomic orbital electron populations 1.22777 0.82094 1.02568 0.99297 1.88070 1.18440 1.25795 1.94698 1.22976 0.95714 0.86206 0.95543 0.91594 1.23044 0.94109 0.92886 0.93406 1.87909 1.22267 1.65545 1.53584 1.22641 0.84557 1.00216 0.94234 1.22140 0.99894 1.01668 0.93900 1.21593 0.92956 0.96248 0.91268 0.93637 1.60358 1.07073 1.62648 0.99469 1.21496 0.91565 0.97115 0.92127 1.18701 0.93350 0.91435 0.91422 1.20482 0.97569 1.08590 1.26314 0.92226 1.25005 0.95639 0.96439 0.96253 1.69991 1.30126 1.09253 1.42409 0.86688 0.82892 0.78355 0.80658 1.20875 1.21266 1.19786 1.22857 1.06137 0.93012 1.01575 1.22538 0.95753 1.02823 0.99036 0.94918 0.89812 0.94018 0.92590 0.89058 0.93758 0.88994 0.91289 0.89611 0.83381 0.94909 0.94450 0.93169 0.91653 0.90964 0.90391 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.46 16 2 O -0.35 -5.57 9.57 -42.72 -0.41 -5.98 16 3 C 0.05 0.79 2.29 -26.59 -0.06 0.73 16 4 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 5 C 0.04 0.55 6.49 37.21 0.24 0.79 16 6 O -0.37 -5.39 10.70 -42.72 -0.46 -5.85 16 7 C 0.06 0.78 6.84 37.20 0.25 1.04 16 8 C -0.14 -2.10 5.47 -26.53 -0.15 -2.24 16 9 C 0.09 1.48 2.36 -67.46 -0.16 1.32 16 10 H 0.05 0.75 7.86 -51.93 -0.41 0.34 16 11 N -0.66 -13.14 6.10 -106.46 -0.65 -13.79 16 12 C 0.11 2.35 5.32 -3.82 -0.02 2.33 16 13 C 0.05 1.27 1.56 -155.66 -0.24 1.03 16 14 C -0.49 -13.15 8.33 -34.44 -0.29 -13.44 16 15 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 16 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 17 N -0.88 -24.58 12.94 55.43 0.72 -23.87 16 18 Si 0.89 20.82 29.55 -169.99 -5.02 15.80 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.20 -4.52 9.96 -26.69 -0.27 -4.78 16 23 C -0.16 -3.92 9.45 -26.69 -0.25 -4.17 16 24 H 0.03 0.34 7.85 -51.93 -0.41 -0.07 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.01 7.84 -51.93 -0.41 0.60 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.05 7.51 -51.93 -0.39 0.66 16 32 H 0.09 1.47 7.83 -51.93 -0.41 1.06 16 33 H 0.35 7.25 7.93 -39.29 -0.31 6.93 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.79 7.38 -51.93 -0.38 0.41 16 36 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 39 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -28.91 323.96 -7.77 -36.68 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.89 Total: 6.29 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 0.06 Total: -14.17 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.07 Total: -37.66 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.87 Total: -11.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.91 -7.77 -36.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381902680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.279 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds