Wall clock time and date at job start Mon Mar 30 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99798 * 2 1 4 4 O 1.20823 * 120.00341 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99770 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.36717 * 59.30155 * 5 3 2 7 7 C 1.54379 * 110.41195 * 296.94982 * 5 3 2 8 8 C 1.54257 * 105.06256 * 217.25122 * 7 5 3 9 9 C 1.54382 * 105.06052 * 0.02562 * 8 7 5 10 10 N 1.48562 * 110.41027 * 181.65112 * 5 3 2 11 11 C 1.46894 * 111.00344 * 277.93542 * 10 5 3 12 12 C 1.52998 * 109.47473 * 169.99909 * 11 10 5 13 13 C 1.53000 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46700 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46647 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99887 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99388 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99302 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00454 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46997 * 90.00153 * 19 17 15 21 21 H 1.48496 * 109.47173 * 209.99867 * 19 17 15 22 22 H 1.48498 * 109.47161 * 330.00252 * 19 17 15 23 23 H 1.09003 * 109.46820 * 299.99521 * 1 2 3 24 24 H 1.08999 * 109.47169 * 59.99304 * 1 2 3 25 25 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.08998 * 110.32365 * 336.14664 * 7 5 3 27 27 H 1.09002 * 110.32581 * 98.35386 * 7 5 3 28 28 H 1.08997 * 110.32124 * 118.89793 * 8 7 5 29 29 H 1.09004 * 110.32547 * 241.10341 * 8 7 5 30 30 H 1.09003 * 110.41233 * 142.63267 * 9 8 7 31 31 H 1.08998 * 110.40868 * 265.07626 * 9 8 7 32 32 H 1.08996 * 109.46975 * 290.00582 * 11 10 5 33 33 H 1.09009 * 109.46835 * 49.99811 * 11 10 5 34 34 H 1.08999 * 109.46851 * 300.00208 * 12 11 10 35 35 H 1.08999 * 109.47145 * 60.00042 * 12 11 10 36 36 H 1.08999 * 109.47426 * 299.99847 * 13 12 11 37 37 H 1.08998 * 109.46802 * 60.00464 * 13 12 11 38 38 H 1.08999 * 109.46943 * 300.00004 * 14 13 12 39 39 H 1.08998 * 109.47228 * 60.00586 * 14 13 12 40 40 H 0.97001 * 119.99959 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9721 0.7739 -0.8795 7 6 4.1388 0.6479 1.2888 8 6 5.3454 1.5331 1.6634 9 6 5.4000 2.6208 0.5692 10 7 4.0109 2.6918 0.0396 11 6 3.9852 3.2900 -1.3018 12 6 4.2045 4.8001 -1.1911 13 6 4.1771 5.4231 -2.5883 14 6 4.3971 6.9333 -2.4776 15 6 4.3694 7.5470 -3.8538 16 1 4.2113 6.9224 -4.7205 17 6 4.5471 8.9058 -4.0062 18 7 4.5225 9.4414 -5.2070 19 14 4.8214 9.9859 -2.5071 20 1 6.2761 10.0787 -2.2233 21 1 4.2808 11.3438 -2.7698 22 1 4.1255 9.3939 -1.3364 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.3930 0.6687 2.0833 27 1 4.4640 -0.3752 1.1003 28 1 5.1917 1.9882 2.6418 29 1 6.2628 0.9444 1.6587 30 1 5.6923 3.5786 0.9996 31 1 6.0926 2.3307 -0.2208 32 1 4.7761 2.8515 -1.9102 33 1 3.0188 3.0963 -1.7675 34 1 3.4135 5.2385 -0.5826 35 1 5.1708 4.9938 -0.7254 36 1 4.9678 4.9849 -3.1972 37 1 3.2106 5.2295 -3.0535 38 1 3.6066 7.3719 -1.8686 39 1 5.3637 7.1265 -2.0126 40 1 4.6479 10.3973 -5.3144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385197086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:51 Heat of formation + Delta-G solvation = -94.883523 kcal Electronic energy + Delta-G solvation = -19034.856385 eV Core-core repulsion = 16042.264388 eV Total energy + Delta-G solvation = -2992.591998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79601 -38.82374 -36.41676 -35.13066 -32.87735 -31.37679 -30.27154 -28.32416 -27.61183 -24.76683 -23.13438 -21.84597 -20.74743 -20.37294 -19.88457 -17.78427 -16.96743 -16.60587 -16.55813 -15.82214 -15.06877 -14.85475 -14.28688 -14.04987 -13.66502 -13.38139 -13.23270 -12.83823 -12.59087 -12.35944 -12.14848 -11.95186 -11.69508 -11.59635 -11.41222 -11.02506 -10.93323 -10.92202 -10.70662 -10.43820 -10.34926 -9.81517 -9.61034 -9.44362 -9.09347 -8.63035 -8.47419 -5.98356 -3.95568 2.12157 2.40912 3.35672 3.42825 3.48750 3.85992 4.25357 4.35022 4.51544 4.63804 4.80437 4.90308 4.92969 4.99025 5.18135 5.24860 5.32333 5.35643 5.36287 5.46619 5.53091 5.67955 5.77454 5.83936 5.88159 6.05847 6.13240 6.20289 6.40733 6.65718 6.74268 6.82952 6.90720 7.08088 7.40873 7.54452 7.69826 7.87310 8.61338 9.07020 9.64900 11.15347 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027643 B = 0.003982 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.680358 B = 7029.995088 C = 7621.281202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.465 3.535 4 O -0.478 6.478 5 C 0.068 3.932 6 H 0.089 0.911 7 C -0.108 4.108 8 C -0.124 4.124 9 C 0.033 3.967 10 N -0.492 5.492 11 C 0.047 3.953 12 C -0.110 4.110 13 C -0.101 4.101 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 -22.273 14.541 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.362 6.362 5 C -0.042 4.042 6 H 0.106 0.894 7 C -0.147 4.147 8 C -0.162 4.162 9 C -0.094 4.094 10 N -0.217 5.217 11 C -0.081 4.081 12 C -0.148 4.148 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.173 -21.455 14.769 26.138 hybrid contribution 0.384 0.310 0.000 0.494 sum -1.789 -21.145 14.769 25.854 Atomic orbital electron populations 1.23247 0.76335 1.03488 1.02703 1.86477 1.23380 1.33648 1.84632 1.23434 0.91466 0.81443 0.73170 1.90713 1.66452 1.36102 1.42920 1.22208 0.88140 0.92909 1.00936 0.89367 1.22217 0.98036 0.99195 0.95215 1.22330 0.97703 0.96557 0.99637 1.23232 0.88985 1.00223 0.96977 1.65153 1.19896 1.11999 1.24675 1.22444 1.01191 0.96963 0.87495 1.21594 1.01676 0.92223 0.99332 1.21427 1.00868 0.97784 0.93872 1.19565 0.96002 0.91862 0.97657 1.21199 1.48947 0.93123 0.92400 0.91159 1.25047 0.94786 0.98107 0.95715 1.69925 1.51006 1.11952 1.21710 0.86759 0.78685 0.79724 0.84037 1.20362 1.21448 1.18915 0.91917 0.91841 0.88188 0.90610 0.89937 0.90556 0.90735 0.89063 0.93106 0.94405 0.90770 0.91455 0.92631 0.93127 0.92865 0.96600 0.97192 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.93 10.56 -39.25 -0.41 -4.34 16 3 C 0.46 6.01 6.92 36.01 0.25 6.26 16 4 O -0.48 -7.92 15.57 -18.75 -0.29 -8.21 16 5 C 0.07 0.75 2.78 -67.22 -0.19 0.57 16 6 H 0.09 0.86 8.00 -51.93 -0.42 0.44 16 7 C -0.11 -0.90 6.53 -25.35 -0.17 -1.07 16 8 C -0.12 -0.99 7.00 -25.35 -0.18 -1.17 16 9 C 0.03 0.35 5.93 -2.03 -0.01 0.34 16 10 N -0.49 -6.52 4.62 -223.26 -1.03 -7.55 16 11 C 0.05 0.69 4.63 -3.83 -0.02 0.67 16 12 C -0.11 -1.92 5.33 -26.73 -0.14 -2.06 16 13 C -0.10 -2.11 5.15 -26.73 -0.14 -2.25 16 14 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 15 C -0.52 -15.41 9.66 -34.44 -0.33 -15.74 16 16 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -28.78 13.96 55.43 0.77 -28.01 16 19 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 23 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 24 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 31 H 0.05 0.50 7.76 -51.93 -0.40 0.10 16 32 H 0.04 0.52 7.77 -51.93 -0.40 0.11 16 33 H 0.07 1.19 7.34 -51.92 -0.38 0.81 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.92 7.49 -51.93 -0.39 0.53 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -34.19 325.34 -7.76 -41.95 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -6.97 Total: -4.89 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.07 Total: -11.70 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.26 Total: -35.56 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.71 Total: -12.55 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.19 -7.76 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.930 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds