Wall clock time and date at job start Mon Mar 30 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99798 * 2 1 4 4 O 1.20823 * 120.00341 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99770 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.36717 * 59.30155 * 5 3 2 7 7 C 1.54379 * 110.41195 * 296.94982 * 5 3 2 8 8 C 1.54257 * 105.06256 * 217.25122 * 7 5 3 9 9 C 1.54382 * 105.06052 * 0.02562 * 8 7 5 10 10 N 1.48562 * 110.41027 * 181.65112 * 5 3 2 11 11 C 1.46894 * 111.00344 * 277.93542 * 10 5 3 12 12 C 1.52998 * 109.47473 * 169.99909 * 11 10 5 13 13 C 1.53000 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46700 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46647 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99887 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99388 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99302 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00454 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46997 * 90.00153 * 19 17 15 21 21 H 1.48496 * 109.47173 * 209.99867 * 19 17 15 22 22 H 1.48498 * 109.47161 * 330.00252 * 19 17 15 23 23 H 1.09003 * 109.46820 * 299.99521 * 1 2 3 24 24 H 1.08999 * 109.47169 * 59.99304 * 1 2 3 25 25 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.08998 * 110.32365 * 336.14664 * 7 5 3 27 27 H 1.09002 * 110.32581 * 98.35386 * 7 5 3 28 28 H 1.08997 * 110.32124 * 118.89793 * 8 7 5 29 29 H 1.09004 * 110.32547 * 241.10341 * 8 7 5 30 30 H 1.09003 * 110.41233 * 142.63267 * 9 8 7 31 31 H 1.08998 * 110.40868 * 265.07626 * 9 8 7 32 32 H 1.08996 * 109.46975 * 290.00582 * 11 10 5 33 33 H 1.09009 * 109.46835 * 49.99811 * 11 10 5 34 34 H 1.08999 * 109.46851 * 300.00208 * 12 11 10 35 35 H 1.08999 * 109.47145 * 60.00042 * 12 11 10 36 36 H 1.08999 * 109.47426 * 299.99847 * 13 12 11 37 37 H 1.08998 * 109.46802 * 60.00464 * 13 12 11 38 38 H 1.08999 * 109.46943 * 300.00004 * 14 13 12 39 39 H 1.08998 * 109.47228 * 60.00586 * 14 13 12 40 40 H 0.97001 * 119.99959 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9721 0.7739 -0.8795 7 6 4.1388 0.6479 1.2888 8 6 5.3454 1.5331 1.6634 9 6 5.4000 2.6208 0.5692 10 7 4.0109 2.6918 0.0396 11 6 3.9852 3.2900 -1.3018 12 6 4.2045 4.8001 -1.1911 13 6 4.1771 5.4231 -2.5883 14 6 4.3971 6.9333 -2.4776 15 6 4.3694 7.5470 -3.8538 16 1 4.2113 6.9224 -4.7205 17 6 4.5471 8.9058 -4.0062 18 7 4.5225 9.4414 -5.2070 19 14 4.8214 9.9859 -2.5071 20 1 6.2761 10.0787 -2.2233 21 1 4.2808 11.3438 -2.7698 22 1 4.1255 9.3939 -1.3364 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.3930 0.6687 2.0833 27 1 4.4640 -0.3752 1.1003 28 1 5.1917 1.9882 2.6418 29 1 6.2628 0.9444 1.6587 30 1 5.6923 3.5786 0.9996 31 1 6.0926 2.3307 -0.2208 32 1 4.7761 2.8515 -1.9102 33 1 3.0188 3.0963 -1.7675 34 1 3.4135 5.2385 -0.5826 35 1 5.1708 4.9938 -0.7254 36 1 4.9678 4.9849 -3.1972 37 1 3.2106 5.2295 -3.0535 38 1 3.6066 7.3719 -1.8686 39 1 5.3637 7.1265 -2.0126 40 1 4.6479 10.3973 -5.3144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385197086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:51 Heat of formation + Delta-G solvation = -117.405186 kcal Electronic energy + Delta-G solvation = -19035.832998 eV Core-core repulsion = 16042.264388 eV Total energy + Delta-G solvation = -2993.568610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73094 -39.71268 -37.39930 -36.72465 -34.74553 -32.91970 -31.07889 -29.92309 -28.31953 -26.35384 -24.20769 -23.04050 -22.05185 -21.41706 -21.24517 -18.90064 -18.64831 -17.85423 -17.50354 -16.72981 -16.41868 -16.28438 -15.64665 -15.15498 -14.82505 -14.64507 -14.50788 -14.12659 -13.91550 -13.50306 -13.42564 -13.06111 -13.04675 -12.79665 -12.61704 -12.28799 -12.17550 -11.97283 -11.81277 -11.72711 -11.65192 -11.39790 -11.34453 -11.24522 -11.21381 -10.77417 -9.56595 -8.30971 -6.35099 1.15610 1.34144 1.37065 1.49868 1.59070 2.35684 2.92706 3.04189 3.50136 3.56804 3.92281 3.97238 4.10903 4.16965 4.26396 4.30219 4.30860 4.46310 4.49507 4.53771 4.65212 4.68691 4.72989 4.83496 4.92706 5.01677 5.09948 5.12643 5.13134 5.21856 5.27202 5.32780 5.53248 5.61860 5.66299 5.76860 5.93921 6.27635 6.72541 6.75926 7.29658 8.86090 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027643 B = 0.003982 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.680358 B = 7029.995088 C = 7621.281202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.524 6.524 5 C 0.064 3.936 6 H 0.106 0.894 7 C -0.102 4.102 8 C -0.117 4.117 9 C 0.028 3.972 10 N -0.515 5.515 11 C 0.057 3.943 12 C -0.098 4.098 13 C -0.094 4.094 14 C -0.011 4.011 15 C -0.536 4.536 16 H 0.030 0.970 17 C 0.002 3.998 18 N -0.952 5.952 19 Si 0.954 3.046 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.251 1.251 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.136 0.864 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.013 0.987 39 H 0.021 0.979 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -23.769 16.900 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.412 6.412 5 C -0.045 4.045 6 H 0.123 0.877 7 C -0.140 4.140 8 C -0.154 4.154 9 C -0.099 4.099 10 N -0.240 5.240 11 C -0.071 4.071 12 C -0.136 4.136 13 C -0.132 4.132 14 C -0.048 4.048 15 C -0.574 4.574 16 H 0.048 0.952 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.174 1.174 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.154 0.846 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.040 0.960 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.020 -22.996 17.138 28.698 hybrid contribution -0.037 0.699 -0.827 1.084 sum -1.057 -22.297 16.311 27.646 Atomic orbital electron populations 1.23521 0.75004 1.05713 1.02177 1.86476 1.24714 1.32478 1.83970 1.23939 0.92345 0.81270 0.71735 1.90694 1.67562 1.37618 1.45333 1.22395 0.86924 0.92003 1.03212 0.87662 1.22266 0.97837 1.00484 0.93412 1.22331 0.98663 0.95875 0.98573 1.23337 0.87563 1.00994 0.97965 1.65040 1.21915 1.13743 1.23348 1.22187 1.00633 0.95341 0.88989 1.21394 1.01816 0.93898 0.96448 1.21294 1.00201 0.95469 0.96270 1.19525 0.96338 0.94257 0.94716 1.21550 1.48944 0.93364 0.93503 0.95182 1.26065 0.94317 0.99781 0.99290 1.70075 1.52186 1.12672 1.24384 0.85604 0.79525 0.77431 0.79780 1.18641 1.20792 1.17447 0.92205 0.92706 0.84561 0.91146 0.87153 0.90527 0.88138 0.89752 0.92151 0.92985 0.92653 0.92970 0.91284 0.92861 0.94199 0.96839 0.96025 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.27 10.56 -51.39 -0.54 -7.82 16 3 C 0.46 11.69 6.92 71.24 0.49 12.19 16 4 O -0.52 -17.65 15.57 21.97 0.34 -17.31 16 5 C 0.06 1.30 2.78 44.32 0.12 1.42 16 6 H 0.11 1.78 8.00 -2.39 -0.02 1.76 16 7 C -0.10 -1.38 6.53 31.49 0.21 -1.18 16 8 C -0.12 -1.47 7.00 31.49 0.22 -1.25 16 9 C 0.03 0.52 5.93 86.40 0.51 1.03 16 10 N -0.52 -12.93 4.62 -860.27 -3.97 -16.90 16 11 C 0.06 1.64 4.63 86.30 0.40 2.04 16 12 C -0.10 -3.32 5.33 30.59 0.16 -3.16 16 13 C -0.09 -3.93 5.15 30.60 0.16 -3.78 16 14 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 15 C -0.54 -32.58 9.66 25.60 0.25 -32.33 16 16 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 17 C 0.00 0.12 5.47 84.66 0.46 0.58 16 18 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 19 Si 0.95 46.11 27.47 68.60 1.88 47.99 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 23 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 24 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 25 H 0.14 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.07 1.05 7.85 -2.39 -0.02 1.03 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 1.66 7.87 -2.39 -0.02 1.64 16 31 H 0.06 1.01 7.76 -2.39 -0.02 0.99 16 32 H 0.05 1.33 7.77 -2.39 -0.02 1.32 16 33 H 0.05 1.79 7.34 -2.38 -0.02 1.78 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.16 7.49 -2.39 -0.02 2.14 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 39 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 40 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -75.73 325.34 3.25 -72.48 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.93 Total: 6.20 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.30 Total: -23.22 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -3.67 Total: -78.33 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.20 Total: -25.13 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -75.73 3.25 -72.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.924 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds