Wall clock time and date at job start Mon Mar 30 2020 04:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20762 * 119.99700 * 2 1 4 4 C 1.50694 * 119.99963 * 179.97438 * 2 1 3 5 5 C 1.53126 * 109.52064 * 154.99789 * 4 2 1 6 6 C 1.53036 * 109.27785 * 177.62451 * 5 4 2 7 7 N 1.46849 * 109.52113 * 300.82264 * 6 5 4 8 8 C 1.46905 * 110.99664 * 185.83957 * 7 6 5 9 9 C 1.53000 * 109.47172 * 75.80542 * 8 7 6 10 10 O 1.42903 * 109.47362 * 65.01886 * 9 8 7 11 11 C 1.42898 * 114.00047 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47138 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99783 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00137 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99925 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00084 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46882 * 119.99988 * 16 14 12 19 19 H 1.48497 * 109.47499 * 240.00509 * 16 14 12 20 20 C 1.46844 * 111.20087 * 61.74387 * 7 6 5 21 21 C 1.53037 * 109.52235 * 298.25802 * 20 7 6 22 22 H 1.09001 * 109.46503 * 239.99812 * 1 2 3 23 23 H 1.08995 * 109.47280 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46835 * 120.00038 * 1 2 3 25 25 H 1.08999 * 109.52368 * 34.87487 * 4 2 1 26 26 H 1.08995 * 109.50214 * 57.68170 * 5 4 2 27 27 H 1.09002 * 109.50549 * 297.56465 * 5 4 2 28 28 H 1.08995 * 109.46292 * 180.80629 * 6 5 4 29 29 H 1.08996 * 109.45440 * 60.83427 * 6 5 4 30 30 H 1.08995 * 109.47048 * 315.80365 * 8 7 6 31 31 H 1.09004 * 109.46925 * 195.80246 * 8 7 6 32 32 H 1.09001 * 109.47402 * 185.02248 * 9 8 7 33 33 H 1.09004 * 109.46869 * 305.02019 * 9 8 7 34 34 H 1.08994 * 109.47210 * 300.00048 * 11 10 9 35 35 H 1.09000 * 109.47219 * 59.99941 * 11 10 9 36 36 H 0.97001 * 119.99362 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.46077 * 58.27441 * 20 7 6 38 38 H 1.08998 * 109.46144 * 178.24191 * 20 7 6 39 39 H 1.09006 * 109.50047 * 299.23638 * 21 20 7 40 40 H 1.08993 * 109.50440 * 179.12232 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.6491 -1.0945 -0.6095 6 6 4.4309 -2.4088 -0.5521 7 7 4.5513 -2.8475 0.8442 8 6 5.4135 -4.0321 0.9512 9 6 6.8773 -3.6128 0.8016 10 8 7.2476 -2.7757 1.8990 11 6 8.6031 -2.3257 1.8552 12 6 8.8824 -1.4552 3.0533 13 1 8.1028 -1.2651 3.7762 14 6 10.1334 -0.9024 3.2272 15 7 11.0829 -1.1343 2.3472 16 14 10.4794 0.1772 4.7119 17 1 9.2540 0.2816 5.5442 18 1 11.5738 -0.4233 5.5162 19 1 10.8854 1.5308 4.2560 20 6 3.2319 -3.1017 1.4366 21 6 2.4144 -1.8080 1.4385 22 1 -0.3632 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.7128 -2.0422 -0.5865 26 1 4.1821 -0.3291 -0.0455 27 1 3.5464 -0.7772 -1.6473 28 1 5.4251 -2.2587 -0.9727 29 1 3.9042 -3.1699 -1.1278 30 1 5.1564 -4.7410 0.1641 31 1 5.2675 -4.5010 1.9244 32 1 7.5103 -4.5000 0.7916 33 1 7.0046 -3.0650 -0.1322 34 1 9.2722 -3.1860 1.8669 35 1 8.7659 -1.7511 0.9433 36 1 11.9629 -0.7450 2.4694 37 1 2.7111 -3.8597 0.8516 38 1 3.3555 -3.4548 2.4604 39 1 2.9280 -1.0539 2.0349 40 1 1.4296 -2.0005 1.8641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385854725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:06 Heat of formation + Delta-G solvation = -118.648486 kcal Electronic energy + Delta-G solvation = -19182.417364 eV Core-core repulsion = 16188.794841 eV Total energy + Delta-G solvation = -2993.622524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06840 -39.48577 -38.21422 -35.19062 -34.56354 -31.92756 -31.38040 -30.13825 -28.69805 -25.72226 -24.48583 -24.11604 -22.56543 -21.18561 -20.18748 -18.63248 -17.57208 -17.40684 -16.79417 -16.54817 -16.18816 -15.99072 -15.76171 -15.62612 -15.21897 -14.80810 -14.39963 -14.20600 -13.68061 -13.52736 -13.35483 -13.03122 -13.01688 -12.93968 -12.75121 -12.67402 -12.26782 -12.21321 -12.13054 -11.81260 -11.64031 -11.35708 -11.21582 -10.86028 -10.40178 -10.17346 -9.07798 -8.32979 -6.44887 1.02469 1.37782 1.40010 1.54758 2.34417 2.94069 3.00501 3.11877 3.27292 3.71393 3.81166 4.06717 4.17104 4.28377 4.29709 4.35189 4.41689 4.50052 4.58827 4.61174 4.69334 4.70707 4.73861 4.77488 4.84147 4.87542 4.96231 5.00657 5.07660 5.17418 5.18668 5.30396 5.38065 5.54913 5.97008 6.20003 6.30995 6.57318 6.62150 6.87124 7.27664 8.79826 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022237 B = 0.004463 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.868174 B = 6272.971727 C = 6977.308610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.357 3.643 3 O -0.510 6.510 4 C -0.133 4.133 5 C -0.106 4.106 6 C 0.062 3.938 7 N -0.563 5.563 8 C 0.073 3.927 9 C 0.056 3.944 10 O -0.396 6.396 11 C 0.210 3.790 12 C -0.546 4.546 13 H 0.058 0.942 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.983 3.017 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.272 1.272 20 C 0.062 3.938 21 C -0.100 4.100 22 H 0.117 0.883 23 H 0.072 0.928 24 H 0.120 0.880 25 H 0.132 0.868 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.031 0.969 34 H -0.015 1.015 35 H -0.022 1.022 36 H 0.271 0.729 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.355 -5.924 -6.463 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.236 3.764 3 O -0.387 6.387 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.066 4.066 7 N -0.289 5.289 8 C -0.055 4.055 9 C -0.021 4.021 10 O -0.316 6.316 11 C 0.135 3.865 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.197 1.197 20 C -0.065 4.065 21 C -0.138 4.138 22 H 0.135 0.865 23 H 0.091 0.909 24 H 0.138 0.862 25 H 0.150 0.850 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.003 0.997 35 H -0.005 1.005 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.777 -4.922 -6.094 24.086 hybrid contribution 0.831 -0.009 -0.232 0.863 sum -21.946 -4.931 -6.327 23.366 Atomic orbital electron populations 1.22357 0.90915 1.05243 1.06852 1.25318 0.93803 0.89419 0.67887 1.90433 1.73543 1.36873 1.37818 1.21872 0.96360 0.97531 0.99410 1.21441 0.95173 0.97102 1.00654 1.22047 0.99666 0.96433 0.88458 1.61638 1.13850 1.34952 1.18469 1.22023 0.89887 0.90926 1.02664 1.22633 0.96584 0.93264 0.89623 1.87889 1.29828 1.67900 1.45981 1.19763 0.78749 0.92374 0.95620 1.21414 0.97552 1.30742 1.08617 0.92350 1.25969 0.95039 0.97779 1.00468 1.70083 1.03945 1.45730 1.37355 0.85139 0.78479 0.77893 0.77902 1.19002 1.19209 1.19734 1.22098 0.87716 0.96619 1.00110 1.21503 1.01234 0.97048 0.93993 0.86492 0.90897 0.86189 0.85004 0.94423 0.90766 0.92627 0.92156 0.90480 0.90070 0.93508 0.95067 0.99708 1.00470 0.92050 0.92057 0.90651 0.94104 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 10.26 71.24 0.73 -1.25 16 2 C 0.36 7.22 6.39 29.10 0.19 7.40 16 3 O -0.51 -16.12 16.78 -1.46 -0.02 -16.15 16 4 C -0.13 -2.42 2.52 -11.46 -0.03 -2.45 16 5 C -0.11 -2.74 4.96 30.65 0.15 -2.59 16 6 C 0.06 1.58 5.29 86.33 0.46 2.04 16 7 N -0.56 -16.50 4.53 -896.37 -4.06 -20.56 16 8 C 0.07 2.09 5.39 86.30 0.47 2.55 16 9 C 0.06 2.19 6.13 71.98 0.44 2.63 16 10 O -0.40 -20.69 10.27 -148.98 -1.53 -22.22 16 11 C 0.21 12.55 5.69 71.24 0.41 12.96 16 12 C -0.55 -34.39 9.43 25.60 0.24 -34.14 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 14 C 0.01 0.34 5.46 84.65 0.46 0.80 16 15 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 16 Si 0.98 46.47 29.54 68.60 2.03 48.50 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.06 1.29 5.43 86.33 0.47 1.76 16 21 C -0.10 -1.94 5.36 30.64 0.16 -1.78 16 22 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 24 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.32 7.79 -2.39 -0.02 1.30 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.67 6.65 -2.39 -0.02 1.65 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.66 8.00 -2.39 -0.02 1.64 16 31 H 0.08 2.30 7.79 -2.38 -0.02 2.28 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.22 6.70 -2.39 -0.02 1.21 16 34 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.64 7.93 -2.39 -0.02 1.62 16 39 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -79.67 326.69 1.82 -77.85 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 0.99 Total: 2.50 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.14 Total: -12.06 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -3.78 Total: -78.42 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.56 Total: -38.37 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -79.67 1.82 -77.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385854725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.800 kcal (2) G-P(sol) polarization free energy of solvation -79.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds