Wall clock time and date at job start Mon Mar 30 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48497 * 109.46850 * 270.00178 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99832 * 3 2 1 6 6 H 1.48497 * 109.47216 * 150.00278 * 3 2 1 7 7 C 1.38954 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 179.72415 * 7 2 1 9 9 N 1.37105 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.47643 * 110.99971 * 298.88939 * 13 12 10 15 15 C 1.50815 * 108.05034 * 150.34432 * 14 13 12 16 16 C 1.53825 * 111.62097 * 95.06150 * 15 14 13 17 17 C 1.54163 * 111.96768 * 319.03796 * 16 15 14 18 18 C 1.50755 * 112.61440 * 318.49094 * 17 16 15 19 19 H 1.09001 * 109.54302 * 333.15235 * 18 17 16 20 20 C 1.52998 * 109.54626 * 212.88349 * 18 17 16 21 21 N 1.46898 * 109.47150 * 65.45196 * 20 18 17 22 22 C 1.39771 * 111.00427 * 170.00266 * 13 12 10 23 23 H 0.97000 * 119.99308 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 25 25 H 1.09000 * 109.47333 * 299.99429 * 12 10 9 26 26 H 1.09002 * 109.47152 * 59.99956 * 12 10 9 27 27 H 1.08995 * 109.74479 * 269.98802 * 14 13 12 28 28 H 1.09005 * 109.74364 * 30.70881 * 14 13 12 29 29 H 1.09000 * 109.05299 * 334.50690 * 15 14 13 30 30 H 1.09003 * 109.04960 * 215.60681 * 15 14 13 31 31 H 1.08997 * 108.97805 * 198.39732 * 16 15 14 32 32 H 1.08999 * 108.98283 * 79.68138 * 16 15 14 33 33 H 1.08998 * 108.85656 * 197.68344 * 17 16 15 34 34 H 1.09002 * 108.85428 * 79.29704 * 17 16 15 35 35 H 1.09005 * 109.47071 * 185.45253 * 20 18 17 36 36 H 1.09009 * 109.47006 * 305.44857 * 20 18 17 37 37 H 1.00905 * 110.99507 * 180.02562 * 21 20 18 38 38 H 1.00898 * 110.99738 * 303.94740 * 21 20 18 39 39 H 1.09010 * 109.01861 * 309.71587 * 22 13 12 40 40 H 1.09004 * 109.02579 * 68.53383 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 -0.0045 11 8 3.2100 -3.5579 -0.0095 12 6 1.2436 -4.8629 -0.0039 13 7 2.1981 -5.9796 -0.0107 14 6 3.0426 -5.9464 -1.2213 15 6 4.3773 -6.5584 -0.8769 16 6 4.4276 -8.0515 -1.2431 17 6 3.1119 -8.7754 -0.8948 18 6 2.5508 -8.3490 0.4379 19 1 3.3612 -8.0085 1.0826 20 6 1.8348 -9.5313 1.0939 21 7 2.8126 -10.5801 1.4130 22 6 1.5479 -7.1958 0.2162 23 1 -0.4849 0.8401 -0.0004 24 1 0.3533 -2.3907 0.0043 25 1 0.6207 -4.9225 0.8886 26 1 0.6132 -4.9189 -0.8914 27 1 2.5683 -6.5209 -2.0169 28 1 3.1828 -4.9148 -1.5443 29 1 4.5537 -6.4483 0.1931 30 1 5.1612 -6.0319 -1.4214 31 1 5.2463 -8.5225 -0.6990 32 1 4.6131 -8.1482 -2.3128 33 1 3.2961 -9.8495 -0.8719 34 1 2.3766 -8.5626 -1.6708 35 1 1.3473 -9.1979 2.0101 36 1 1.0864 -9.9287 0.4081 37 1 2.3638 -11.3727 1.8472 38 1 3.3236 -10.8606 0.5895 39 1 0.9148 -7.1011 1.0985 40 1 0.9219 -7.4301 -0.6449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390484208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:26 Heat of formation + Delta-G solvation = -35.342445 kcal Electronic energy + Delta-G solvation = -19659.333251 eV Core-core repulsion = 16701.615899 eV Total energy + Delta-G solvation = -2957.717352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71615 -37.87552 -35.51914 -33.90109 -33.64548 -31.19512 -31.10279 -28.18685 -26.12703 -24.89270 -24.34146 -22.31224 -20.43165 -19.38814 -18.82103 -17.80253 -16.40838 -16.12378 -15.56042 -15.03198 -14.76769 -14.72669 -14.33487 -13.97485 -13.74992 -13.60088 -13.24163 -13.08512 -12.21862 -11.98034 -11.93054 -11.72544 -11.48426 -11.22453 -11.04898 -10.84068 -10.57382 -10.40632 -10.37045 -10.19039 -10.09520 -10.02577 -9.41423 -8.84347 -8.30642 -7.91791 -7.68842 -6.38522 -3.78974 3.19903 3.28367 3.34545 3.95113 4.01989 4.24578 4.53481 4.76880 4.87120 4.93801 5.11144 5.28017 5.30440 5.38119 5.43215 5.47500 5.58417 5.67390 5.76861 5.82923 5.92526 5.97919 6.01179 6.10643 6.16108 6.31669 6.33712 6.39663 6.45272 6.72704 6.80986 6.97966 7.24111 7.47844 7.58295 7.85820 8.10941 8.65913 9.21790 9.58801 10.10753 10.79395 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043230 B = 0.004292 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.540782 B = 6521.702130 C = 6898.658995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.574 6.574 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.071 3.929 15 C -0.109 4.109 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.085 4.085 19 H 0.093 0.907 20 C 0.069 3.931 21 N -0.850 5.850 22 C 0.086 3.914 23 H 0.271 0.729 24 H 0.391 0.609 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.024 0.976 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.023 0.977 37 H 0.338 0.662 38 H 0.339 0.661 39 H 0.067 0.933 40 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -17.317 -1.478 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.079 4.079 13 N -0.258 5.258 14 C -0.055 4.055 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.105 4.105 19 H 0.112 0.888 20 C -0.062 4.062 21 N -0.381 5.381 22 C -0.045 4.045 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.086 0.914 40 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.103 -16.559 -0.645 16.705 hybrid contribution -1.447 0.122 -1.306 1.953 sum 0.656 -16.437 -1.951 16.566 Atomic orbital electron populations 1.69616 1.05932 1.28064 1.50855 1.25249 0.95614 0.99672 0.97449 0.85871 0.79272 0.80904 0.78323 1.20490 1.20968 1.19405 1.19696 0.93345 0.82244 1.47404 0.87932 1.41886 1.09170 1.04613 1.64634 1.19776 0.88471 0.84594 0.84271 1.90503 1.13619 1.86891 1.54813 1.21794 0.93730 0.91105 1.01296 1.58236 1.25047 1.02064 1.40495 1.21857 0.92767 1.02306 0.88564 1.21281 0.97109 0.93182 1.03121 1.21935 0.96754 0.96469 1.00227 1.21449 0.97631 0.98873 0.97001 1.21068 0.98850 0.93610 0.96930 0.88824 1.21777 0.92887 0.92298 0.99238 1.58739 1.30675 1.14935 1.33752 1.20889 0.94659 0.89380 0.99560 0.91943 0.77544 0.89573 0.93706 0.95745 0.88741 0.90409 0.92298 0.92443 0.92922 0.93016 0.92802 0.90852 0.95903 0.84971 0.84740 0.91438 0.97041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.41 5.29 -10.96 -0.06 -14.46 16 10 C 0.44 10.48 7.20 -10.99 -0.08 10.40 16 11 O -0.57 -15.31 13.87 5.55 0.08 -15.24 16 12 C 0.05 0.94 5.45 -4.98 -0.03 0.91 16 13 N -0.53 -9.08 3.76 -241.44 -0.91 -9.99 16 14 C 0.07 1.21 4.62 -4.51 -0.02 1.19 16 15 C -0.11 -1.67 5.41 -27.40 -0.15 -1.82 16 16 C -0.12 -1.40 5.91 -25.69 -0.15 -1.56 16 17 C -0.11 -1.25 4.78 -27.25 -0.13 -1.38 16 18 C -0.09 -1.03 2.12 -91.00 -0.19 -1.22 16 19 H 0.09 1.36 7.11 -51.93 -0.37 0.99 16 20 C 0.07 0.69 6.14 -3.83 -0.02 0.67 16 21 N -0.85 -7.76 9.62 -10.37 -0.10 -7.86 16 22 C 0.09 1.17 4.32 -6.75 -0.03 1.14 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 25 H 0.09 1.43 7.83 -51.93 -0.41 1.02 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.38 6.66 -51.93 -0.35 0.03 16 28 H 0.09 1.92 5.61 -51.93 -0.29 1.63 16 29 H 0.08 1.35 7.26 -51.93 -0.38 0.97 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.49 5.92 -51.93 -0.31 0.18 16 34 H 0.05 0.63 6.58 -51.93 -0.34 0.29 16 35 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.02 0.21 8.14 -51.92 -0.42 -0.21 16 37 H 0.34 2.42 9.08 -39.29 -0.36 2.06 16 38 H 0.34 2.79 7.03 -39.29 -0.28 2.52 16 39 H 0.07 0.88 7.61 -51.92 -0.40 0.48 16 40 H 0.01 0.16 7.54 -51.93 -0.39 -0.24 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -30.21 307.97 -7.91 -38.12 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.22 Total: 12.26 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.04 Total: 0.36 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.34 Total: -56.31 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.21 -7.91 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390484208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.780 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds