Wall clock time and date at job start Mon Mar 30 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48497 * 109.46850 * 270.00178 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99832 * 3 2 1 6 6 H 1.48497 * 109.47216 * 150.00278 * 3 2 1 7 7 C 1.38954 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 179.72415 * 7 2 1 9 9 N 1.37105 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.47643 * 110.99971 * 298.88939 * 13 12 10 15 15 C 1.50815 * 108.05034 * 150.34432 * 14 13 12 16 16 C 1.53825 * 111.62097 * 95.06150 * 15 14 13 17 17 C 1.54163 * 111.96768 * 319.03796 * 16 15 14 18 18 C 1.50755 * 112.61440 * 318.49094 * 17 16 15 19 19 H 1.09001 * 109.54302 * 333.15235 * 18 17 16 20 20 C 1.52998 * 109.54626 * 212.88349 * 18 17 16 21 21 N 1.46898 * 109.47150 * 65.45196 * 20 18 17 22 22 C 1.39771 * 111.00427 * 170.00266 * 13 12 10 23 23 H 0.97000 * 119.99308 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 25 25 H 1.09000 * 109.47333 * 299.99429 * 12 10 9 26 26 H 1.09002 * 109.47152 * 59.99956 * 12 10 9 27 27 H 1.08995 * 109.74479 * 269.98802 * 14 13 12 28 28 H 1.09005 * 109.74364 * 30.70881 * 14 13 12 29 29 H 1.09000 * 109.05299 * 334.50690 * 15 14 13 30 30 H 1.09003 * 109.04960 * 215.60681 * 15 14 13 31 31 H 1.08997 * 108.97805 * 198.39732 * 16 15 14 32 32 H 1.08999 * 108.98283 * 79.68138 * 16 15 14 33 33 H 1.08998 * 108.85656 * 197.68344 * 17 16 15 34 34 H 1.09002 * 108.85428 * 79.29704 * 17 16 15 35 35 H 1.09005 * 109.47071 * 185.45253 * 20 18 17 36 36 H 1.09009 * 109.47006 * 305.44857 * 20 18 17 37 37 H 1.00905 * 110.99507 * 180.02562 * 21 20 18 38 38 H 1.00898 * 110.99738 * 303.94740 * 21 20 18 39 39 H 1.09010 * 109.01861 * 309.71587 * 22 13 12 40 40 H 1.09004 * 109.02579 * 68.53383 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 -0.0045 11 8 3.2100 -3.5579 -0.0095 12 6 1.2436 -4.8629 -0.0039 13 7 2.1981 -5.9796 -0.0107 14 6 3.0426 -5.9464 -1.2213 15 6 4.3773 -6.5584 -0.8769 16 6 4.4276 -8.0515 -1.2431 17 6 3.1119 -8.7754 -0.8948 18 6 2.5508 -8.3490 0.4379 19 1 3.3612 -8.0085 1.0826 20 6 1.8348 -9.5313 1.0939 21 7 2.8126 -10.5801 1.4130 22 6 1.5479 -7.1958 0.2162 23 1 -0.4849 0.8401 -0.0004 24 1 0.3533 -2.3907 0.0043 25 1 0.6207 -4.9225 0.8886 26 1 0.6132 -4.9189 -0.8914 27 1 2.5683 -6.5209 -2.0169 28 1 3.1828 -4.9148 -1.5443 29 1 4.5537 -6.4483 0.1931 30 1 5.1612 -6.0319 -1.4214 31 1 5.2463 -8.5225 -0.6990 32 1 4.6131 -8.1482 -2.3128 33 1 3.2961 -9.8495 -0.8719 34 1 2.3766 -8.5626 -1.6708 35 1 1.3473 -9.1979 2.0101 36 1 1.0864 -9.9287 0.4081 37 1 2.3638 -11.3727 1.8472 38 1 3.3236 -10.8606 0.5895 39 1 0.9148 -7.1011 1.0985 40 1 0.9219 -7.4301 -0.6449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390484208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:26 Heat of formation + Delta-G solvation = -58.490802 kcal Electronic energy + Delta-G solvation = -19660.337039 eV Core-core repulsion = 16701.615899 eV Total energy + Delta-G solvation = -2958.721140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04792 -39.55409 -36.67710 -35.78482 -34.84152 -33.23628 -32.09696 -29.62968 -27.43800 -26.25788 -25.83140 -23.42574 -21.58267 -21.07641 -20.10792 -19.77240 -17.78502 -17.33575 -16.77108 -16.57111 -16.31360 -15.94211 -15.77109 -15.46997 -15.12391 -14.84676 -14.50474 -14.31504 -13.72805 -13.47114 -13.22961 -13.11576 -12.90131 -12.81245 -12.40772 -12.31482 -12.12269 -12.03126 -11.78887 -11.46384 -11.41463 -11.16426 -11.07794 -10.20625 -9.96477 -9.52585 -9.02912 -8.45033 -5.93265 1.38304 1.41773 1.54656 2.08129 2.29689 2.80360 3.21951 3.37415 3.66197 3.84381 3.96378 4.00268 4.22680 4.29577 4.36332 4.38429 4.49803 4.51599 4.58790 4.59088 4.69557 4.79545 4.84627 4.89543 4.99890 5.14195 5.29068 5.33761 5.38743 5.42418 5.54142 5.59279 5.95841 6.17549 6.31086 6.60595 6.65138 6.67596 7.15094 7.59056 8.15051 8.72564 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043230 B = 0.004292 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.540782 B = 6521.702130 C = 6898.658995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.609 6.609 12 C 0.062 3.938 13 N -0.548 5.548 14 C 0.076 3.924 15 C -0.105 4.105 16 C -0.109 4.109 17 C -0.109 4.109 18 C -0.078 4.078 19 H 0.066 0.934 20 C 0.075 3.925 21 N -0.859 5.859 22 C 0.081 3.919 23 H 0.277 0.723 24 H 0.395 0.605 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.351 0.649 38 H 0.344 0.656 39 H 0.076 0.924 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -18.816 -1.744 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.495 6.495 12 C -0.068 4.068 13 N -0.273 5.273 14 C -0.050 4.050 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.098 4.098 19 H 0.085 0.915 20 C -0.056 4.056 21 N -0.392 5.392 22 C -0.049 4.049 23 H 0.086 0.914 24 H 0.229 0.771 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.363 -18.091 -0.910 18.165 hybrid contribution -1.201 0.547 -1.212 1.792 sum 0.162 -17.543 -2.122 17.672 Atomic orbital electron populations 1.69677 1.06820 1.29194 1.50630 1.26015 0.96523 1.02335 0.96421 0.84944 0.77894 0.76995 0.78607 1.19664 1.19567 1.19831 1.19651 0.92656 0.84018 1.49699 0.90360 1.41946 1.09261 1.04701 1.65475 1.20763 0.88385 0.85910 0.82096 1.90481 1.15537 1.87709 1.55761 1.21694 0.93458 0.88534 1.03148 1.58237 1.25315 1.03067 1.40647 1.21720 0.93870 1.00173 0.89256 1.21210 0.96022 0.95778 1.01265 1.21871 0.97888 0.93761 1.01162 1.21432 0.96842 1.00093 0.96306 1.20971 0.97812 0.93822 0.97168 0.91522 1.21659 0.92988 0.91712 0.99215 1.58691 1.30812 1.15421 1.34260 1.21020 0.95204 0.88301 1.00360 0.91373 0.77115 0.87473 0.91777 0.93883 0.92829 0.92953 0.93215 0.91664 0.91558 0.90669 0.92674 0.91170 0.94432 0.83581 0.84085 0.90616 0.95722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.80 7.16 -2.92 -0.02 4.78 16 9 N -0.58 -30.02 5.29 -306.99 -1.62 -31.65 16 10 C 0.44 21.36 7.20 87.66 0.63 21.99 16 11 O -0.61 -33.85 13.87 -3.05 -0.04 -33.89 16 12 C 0.06 2.23 5.45 85.56 0.47 2.70 16 13 N -0.55 -18.32 3.76 -917.79 -3.45 -21.77 16 14 C 0.08 2.59 4.62 85.45 0.39 2.99 16 15 C -0.10 -3.25 5.41 30.16 0.16 -3.08 16 16 C -0.11 -2.46 5.91 31.27 0.18 -2.27 16 17 C -0.11 -2.14 4.78 30.26 0.14 -2.00 16 18 C -0.08 -1.74 2.12 -11.04 -0.02 -1.76 16 19 H 0.07 1.88 7.11 -2.39 -0.02 1.86 16 20 C 0.08 1.31 6.14 86.30 0.53 1.84 16 21 N -0.86 -13.41 9.62 -186.71 -1.80 -15.21 16 22 C 0.08 2.05 4.32 88.07 0.38 2.43 16 23 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 24 H 0.40 19.59 7.90 -92.70 -0.73 18.86 16 25 H 0.11 3.40 7.83 -2.39 -0.02 3.38 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.28 6.66 -2.39 -0.02 1.26 16 28 H 0.05 2.26 5.61 -2.38 -0.01 2.25 16 29 H 0.05 1.87 7.26 -2.39 -0.02 1.86 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.15 5.92 -2.39 -0.01 1.14 16 34 H 0.05 1.10 6.58 -2.39 -0.02 1.08 16 35 H 0.07 1.27 8.05 -2.38 -0.02 1.25 16 36 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.35 4.07 9.08 -89.69 -0.81 3.25 16 38 H 0.34 4.64 7.03 -89.70 -0.63 4.01 16 39 H 0.08 1.80 7.61 -2.38 -0.02 1.78 16 40 H 0.02 0.58 7.54 -2.39 -0.02 0.56 16 Total: -1.00 -66.30 307.97 -1.56 -67.86 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -1.11 Total: 34.80 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.15 Total: 4.37 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -6.59 Total: -118.66 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.04 Total: -33.89 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.30 -1.56 -67.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390484208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.369 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds