Wall clock time and date at job start Mon Mar 30 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99841 * 2 1 4 4 O 1.20827 * 119.99826 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99985 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46448 * 23.94428 * 5 3 2 7 7 C 1.52990 * 109.46791 * 143.93161 * 5 3 2 8 8 C 1.53009 * 109.46710 * 164.02621 * 7 5 3 9 9 C 1.53016 * 109.46290 * 75.93760 * 8 7 5 10 10 C 1.52985 * 109.46022 * 284.05708 * 9 8 7 11 11 C 1.52988 * 109.50147 * 315.98340 * 10 9 8 12 12 C 1.53007 * 109.47454 * 112.94431 * 11 10 9 13 13 C 1.52991 * 109.46988 * 263.95821 * 5 3 2 14 14 H 1.08995 * 109.46739 * 247.05762 * 13 5 3 15 15 N 1.46496 * 109.46533 * 7.05510 * 13 5 3 16 16 C 1.36941 * 120.00068 * 244.53139 * 15 13 5 17 17 H 1.08000 * 119.99603 * 0.28238 * 16 15 13 18 18 C 1.38808 * 120.00406 * 180.27458 * 16 15 13 19 19 N 1.31627 * 119.99803 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46997 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46998 * 119.99996 * 20 18 16 23 23 H 1.48500 * 109.47025 * 240.00212 * 20 18 16 24 24 H 1.08998 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46620 * 299.99310 * 1 2 3 26 26 H 1.08994 * 109.47326 * 59.99845 * 1 2 3 27 27 H 1.09000 * 109.47554 * 44.02496 * 7 5 3 28 28 H 1.09006 * 109.47327 * 284.01973 * 7 5 3 29 29 H 1.09002 * 109.47328 * 315.94043 * 8 7 5 30 30 H 1.08999 * 109.47449 * 195.93927 * 8 7 5 31 31 H 1.08994 * 109.47314 * 164.05717 * 9 8 7 32 32 H 1.09003 * 109.47110 * 44.04909 * 9 8 7 33 33 H 1.09005 * 109.46434 * 195.97806 * 10 9 8 34 34 H 1.08998 * 109.46587 * 75.98995 * 10 9 8 35 35 H 1.09002 * 109.46778 * 352.94388 * 11 10 9 36 36 H 1.09002 * 109.47629 * 232.95144 * 11 10 9 37 37 H 1.08995 * 109.47721 * 164.06500 * 12 11 10 38 38 H 1.08997 * 109.47450 * 44.03867 * 12 11 10 39 39 H 0.96996 * 120.00203 * 64.80634 * 15 13 5 40 40 H 0.96998 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9780 0.3561 -0.4180 7 6 4.0140 2.4662 -0.8498 8 6 5.4767 2.7919 -0.5403 9 6 6.3828 1.7618 -1.2180 10 6 6.3406 0.4502 -0.4318 11 6 6.4364 0.7490 1.0656 12 6 5.1153 0.3817 1.7446 13 6 4.0681 1.4530 1.4337 14 1 4.5158 2.4408 1.5419 15 7 2.9441 1.3216 2.3640 16 6 2.5551 2.3926 3.1235 17 1 3.0740 3.3355 3.0332 18 6 1.4938 2.2666 4.0092 19 7 0.8616 1.1173 4.1194 20 14 0.9627 3.7278 5.0446 21 1 1.8278 4.8943 4.7351 22 1 -0.4505 4.0648 4.7372 23 1 1.0881 3.3860 6.4843 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 3.3924 3.3312 -0.6188 28 1 3.9129 2.2177 -1.9063 29 1 5.6354 2.7619 0.5377 30 1 5.7144 3.7874 -0.9150 31 1 7.4055 2.1380 -1.2427 32 1 6.0354 1.5864 -2.2362 33 1 7.1785 -0.1797 -0.7308 34 1 5.4044 -0.0679 -0.6396 35 1 6.6374 1.8103 1.2121 36 1 7.2448 0.1625 1.5023 37 1 5.2651 0.3218 2.8225 38 1 4.7707 -0.5827 1.3713 39 1 2.4780 0.4748 2.4450 40 1 0.1202 1.0291 4.7386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393765304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:29 Heat of formation + Delta-G solvation = -77.473307 kcal Electronic energy + Delta-G solvation = -20895.648704 eV Core-core repulsion = 17903.811670 eV Total energy + Delta-G solvation = -2991.837034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16049 -38.42487 -35.53968 -34.59570 -32.55167 -32.06451 -29.40736 -27.74118 -26.19077 -25.26634 -22.93777 -21.90096 -21.41091 -19.55878 -18.79482 -17.14760 -16.91186 -16.02484 -15.57104 -15.14605 -14.59751 -14.23048 -13.85979 -13.66998 -13.29129 -13.21015 -12.91753 -12.36431 -12.14786 -12.02980 -11.39133 -11.21403 -11.16217 -11.06104 -10.78836 -10.74467 -10.72046 -10.52949 -10.17492 -10.07318 -9.93566 -9.90014 -9.72747 -9.42956 -9.22486 -8.90581 -7.00224 -5.73443 -3.03365 3.25181 3.46250 3.52171 3.53773 3.57942 4.61002 4.84850 5.05801 5.11062 5.34366 5.42251 5.44666 5.51526 5.52534 5.58662 5.71971 5.74338 5.79056 5.89358 5.90918 6.03143 6.09939 6.19191 6.24945 6.26060 6.30455 6.33522 6.40994 6.49168 6.59031 6.63589 6.74038 6.83312 6.97694 7.32270 7.74438 8.42817 8.75498 9.55377 10.07100 10.42013 11.48625 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.008509 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.805824 B = 3289.652775 C = 3910.791483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.367 6.367 3 C 0.488 3.512 4 O -0.503 6.503 5 C -0.104 4.104 6 H 0.093 0.907 7 C -0.105 4.105 8 C -0.139 4.139 9 C -0.117 4.117 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.134 4.134 13 C 0.182 3.818 14 H 0.081 0.919 15 N -0.720 5.720 16 C -0.233 4.233 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.293 1.293 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.386 0.614 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.831 -2.407 -10.707 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.284 6.284 3 C 0.329 3.671 4 O -0.388 6.388 5 C -0.126 4.126 6 H 0.111 0.889 7 C -0.143 4.143 8 C -0.175 4.175 9 C -0.154 4.154 10 C -0.167 4.167 11 C -0.163 4.163 12 C -0.173 4.173 13 C 0.071 3.929 14 H 0.099 0.901 15 N -0.361 5.361 16 C -0.364 4.364 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.220 0.780 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.548 -1.923 -10.596 13.749 hybrid contribution -0.848 0.457 0.631 1.152 sum 7.700 -1.466 -9.965 12.678 Atomic orbital electron populations 1.23055 0.77460 1.02397 1.02240 1.86422 1.22687 1.34457 1.84817 1.23158 0.91405 0.81060 0.71432 1.90574 1.66889 1.36356 1.45023 1.22311 0.87870 1.00684 1.01703 0.88904 1.21550 0.96542 0.98034 0.98144 1.22064 0.94169 0.98193 1.03101 1.21634 0.99227 0.95696 0.98888 1.21898 1.01936 0.97350 0.95528 1.21797 0.97765 1.01848 0.94851 1.22315 0.94608 0.99394 1.01021 1.20551 0.88660 0.98108 0.85558 0.90113 1.42645 1.34467 1.13311 1.45660 1.19260 1.11560 0.91012 1.14541 0.91159 1.24700 0.98676 0.96892 1.00282 1.69677 1.24591 1.23376 1.40267 0.86144 0.78277 0.82063 0.79879 1.20559 1.21973 1.21997 0.89367 0.91076 0.93377 0.90382 0.92478 0.89049 0.92222 0.92510 0.92358 0.92749 0.90938 0.91034 0.92755 0.91221 0.92356 0.77997 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -7.48 10.53 -39.27 -0.41 -7.89 16 3 C 0.49 10.45 5.20 36.00 0.19 10.63 16 4 O -0.50 -12.39 15.73 -18.75 -0.30 -12.68 16 5 C -0.10 -1.84 2.17 -91.78 -0.20 -2.04 16 6 H 0.09 1.46 4.69 -51.93 -0.24 1.22 16 7 C -0.10 -1.63 4.96 -26.73 -0.13 -1.76 16 8 C -0.14 -1.79 5.33 -26.72 -0.14 -1.93 16 9 C -0.12 -1.28 5.71 -26.73 -0.15 -1.44 16 10 C -0.13 -1.50 5.48 -26.74 -0.15 -1.64 16 11 C -0.12 -1.61 5.47 -26.73 -0.15 -1.75 16 12 C -0.13 -2.19 5.20 -26.73 -0.14 -2.33 16 13 C 0.18 3.51 2.41 -67.93 -0.16 3.35 16 14 H 0.08 1.59 5.11 -51.93 -0.27 1.32 16 15 N -0.72 -17.93 3.44 -53.43 -0.18 -18.12 16 16 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 17 H 0.07 1.94 7.65 -52.49 -0.40 1.54 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 20 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.07 1.51 8.13 -51.93 -0.42 1.09 16 26 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.08 1.40 7.30 -51.93 -0.38 1.02 16 28 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 29 H 0.09 1.28 2.83 -51.93 -0.15 1.13 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.90 4.69 -51.93 -0.24 0.65 16 35 H 0.07 0.92 5.47 -51.93 -0.28 0.63 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 0.93 7.47 -51.93 -0.39 0.55 16 39 H 0.39 10.39 7.67 -40.82 -0.31 10.07 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -31.82 303.51 -6.83 -38.65 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.99 Total: 8.96 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.21 Total: -4.11 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.54 Total: -45.55 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.71 Total: -20.57 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.82 -6.83 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393765304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.827 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds