Wall clock time and date at job start Mon Mar 30 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48482 * 110.82183 * 2 1 4 4 C 1.54796 * 101.71880 * 95.68728 * 3 2 1 5 5 H 1.08997 * 110.85054 * 265.47804 * 4 3 2 6 6 N 1.46905 * 110.85237 * 142.05205 * 4 3 2 7 7 C 1.46901 * 110.99870 * 157.78171 * 6 4 3 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46923 * 299.99733 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99872 * 8 7 6 11 11 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 12 12 C 1.50701 * 109.46820 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00070 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00228 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00068 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46779 * 90.00373 * 16 14 12 18 18 H 1.48498 * 109.46986 * 210.00365 * 16 14 12 19 19 H 1.48503 * 109.47043 * 330.00844 * 16 14 12 20 20 C 1.51808 * 102.41771 * 23.76579 * 4 3 2 21 21 O 1.21286 * 126.04022 * 165.26006 * 20 4 3 22 22 N 1.34591 * 107.92356 * 345.27760 * 20 4 3 23 23 H 1.08996 * 109.47300 * 300.17230 * 1 2 3 24 24 H 1.08996 * 109.47695 * 60.17882 * 1 2 3 25 25 H 1.09005 * 109.46818 * 180.17797 * 1 2 3 26 26 H 1.08997 * 111.14041 * 337.54499 * 3 2 1 27 27 H 1.09000 * 110.90780 * 213.72535 * 3 2 1 28 28 H 1.00901 * 110.99869 * 33.82882 * 6 4 3 29 29 H 1.09004 * 109.47031 * 299.99620 * 7 6 4 30 30 H 1.08995 * 109.47111 * 59.99900 * 7 6 4 31 31 H 1.09002 * 109.47301 * 60.00027 * 9 8 7 32 32 H 1.09001 * 109.47017 * 180.02562 * 9 8 7 33 33 H 1.09005 * 109.47249 * 300.00302 * 9 8 7 34 34 H 1.09001 * 109.46999 * 60.00126 * 10 8 7 35 35 H 1.09001 * 109.46478 * 179.97438 * 10 8 7 36 36 H 1.08993 * 109.47197 * 299.99817 * 10 8 7 37 37 H 1.08993 * 109.47740 * 299.99810 * 11 8 7 38 38 H 1.09005 * 109.47573 * 59.99976 * 11 8 7 39 39 H 0.97002 * 120.00555 * 179.97438 * 15 14 12 40 40 H 0.96993 * 123.52971 * 178.40808 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9967 1.3878 0.0000 4 6 2.2489 1.6283 1.5082 5 1 1.3941 2.1218 1.9706 6 7 3.4757 2.4095 1.7153 7 6 3.4574 3.0821 3.0211 8 6 4.7480 3.8842 3.1997 9 6 5.9494 2.9395 3.1295 10 6 4.8562 4.9304 2.0886 11 6 4.7286 4.5852 4.5595 12 6 6.0001 5.3748 4.7357 13 1 6.7470 5.3767 3.9557 14 6 6.2093 6.0955 5.8924 15 7 5.2995 6.0936 6.8421 16 14 7.7851 7.0748 6.1105 17 1 7.5903 8.4496 5.5841 18 1 8.1307 7.1414 7.5532 19 1 8.8868 6.4118 5.3676 20 6 2.4110 0.2162 2.0413 21 8 2.8686 -0.0905 3.1219 22 7 1.9576 -0.6354 1.1029 23 1 -0.3634 0.5165 0.8884 24 1 -0.3634 0.5110 -0.8915 25 1 -0.3633 -1.0277 0.0032 26 1 1.2583 2.0892 -0.3883 27 1 2.9265 1.4504 -0.5653 28 1 3.6117 3.0739 0.9682 29 1 2.6017 3.7555 3.0710 30 1 3.3798 2.3368 3.8127 31 1 5.9630 2.4403 2.1606 32 1 6.8688 3.5108 3.2572 33 1 5.8723 2.1941 3.9211 34 1 4.0002 5.6034 2.1387 35 1 5.7754 5.5021 2.2162 36 1 4.8697 4.4313 1.1197 37 1 3.8728 5.2583 4.6092 38 1 4.6513 3.8402 5.3514 39 1 5.4469 6.6004 7.6560 40 1 1.9765 -1.6002 1.2009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393909585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:12 Heat of formation + Delta-G solvation = -0.542742 kcal Electronic energy + Delta-G solvation = -19638.518451 eV Core-core repulsion = 16682.310128 eV Total energy + Delta-G solvation = -2956.208323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.18032 -37.59662 -37.31190 -34.37495 -32.21519 -31.44991 -29.40578 -26.89837 -26.29946 -25.79369 -24.79476 -22.83815 -22.41452 -20.52868 -18.09805 -17.54337 -17.01765 -16.20606 -15.83025 -15.09177 -14.72915 -14.51614 -14.32441 -14.05795 -13.69863 -13.48787 -13.14043 -12.79419 -12.59190 -12.41559 -11.98203 -11.84242 -11.65909 -10.97046 -10.86801 -10.74572 -10.63748 -10.46523 -10.25183 -10.09246 -9.92706 -9.65571 -9.00688 -8.80094 -8.59217 -8.28169 -8.23190 -5.92545 -3.92705 2.45852 2.63091 3.35714 3.42380 3.45607 3.73659 4.14391 4.34043 4.48500 4.53750 4.80972 4.97607 5.13380 5.18553 5.40576 5.43170 5.45719 5.70828 5.75314 5.95578 5.99014 6.22428 6.34093 6.55472 6.69066 6.77384 6.79198 6.87697 7.09412 7.24739 7.29534 7.35234 7.40187 7.54233 7.74438 7.89888 8.07771 8.17045 8.51767 9.12616 9.69866 11.19188 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.046366 B = 0.004217 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.750710 B = 6637.485032 C = 6785.466735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.290 5.290 3 C 0.029 3.971 4 C 0.023 3.977 5 H 0.081 0.919 6 N -0.659 5.659 7 C 0.068 3.932 8 C -0.057 4.057 9 C -0.116 4.116 10 C -0.129 4.129 11 C 0.034 3.966 12 C -0.506 4.506 13 H 0.059 0.941 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.515 3.485 21 O -0.500 6.500 22 N -0.581 5.581 23 H 0.037 0.963 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.347 0.653 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.012 0.988 38 H 0.016 0.984 39 H 0.258 0.742 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 -9.777 -16.151 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 N -0.108 5.108 3 C -0.099 4.099 4 C -0.093 4.093 5 H 0.099 0.901 6 N -0.293 5.293 7 C -0.060 4.060 8 C -0.057 4.057 9 C -0.173 4.173 10 C -0.187 4.187 11 C -0.004 4.004 12 C -0.545 4.545 13 H 0.077 0.923 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.199 1.199 20 C 0.298 3.702 21 O -0.369 6.369 22 N -0.333 5.333 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.168 0.832 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -9.420 -10.565 -15.567 21.040 hybrid contribution -0.325 1.376 0.796 1.622 sum -9.744 -9.189 -14.771 19.939 Atomic orbital electron populations 1.23247 0.87893 1.03353 1.02017 1.64944 1.07645 1.14932 1.23269 1.23879 1.03001 0.87918 0.95055 1.22749 0.95323 0.94653 0.96545 0.90124 1.60351 1.32417 1.30425 1.06155 1.22291 0.98003 0.96278 0.89459 1.20623 0.92525 0.94136 0.98438 1.21594 0.97895 0.98094 0.99717 1.21785 1.02343 0.98391 0.96166 1.19121 0.97012 0.94760 0.89491 1.21235 1.03396 1.27968 1.01875 0.92263 1.25017 0.96427 0.96979 0.96171 1.69970 1.34259 1.42216 1.07304 0.86661 0.84106 0.80447 0.77196 1.20856 1.21379 1.19889 1.21382 0.76818 0.88402 0.83602 1.90786 1.43510 1.82061 1.20543 1.45864 1.63279 1.09038 1.15076 0.94439 0.89489 0.90456 0.88500 0.86966 0.83209 0.95675 0.90444 0.94040 0.92674 0.93967 0.94060 0.91574 0.94857 0.96945 0.96552 0.93183 0.72981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.10 9.73 60.06 0.58 0.48 16 2 N -0.29 -2.50 5.89 -118.87 -0.70 -3.20 16 3 C 0.03 0.24 6.64 -2.00 -0.01 0.23 16 4 C 0.02 0.28 3.36 -67.37 -0.23 0.05 16 5 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 6 N -0.66 -9.50 5.54 -106.36 -0.59 -10.09 16 7 C 0.07 1.23 4.51 -3.82 -0.02 1.21 16 8 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 9 C -0.12 -2.38 8.06 37.16 0.30 -2.08 16 10 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 11 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 12 C -0.51 -14.08 7.65 -34.44 -0.26 -14.35 16 13 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.51 7.45 8.27 -10.52 -0.09 7.36 16 21 O -0.50 -9.55 17.42 5.55 0.10 -9.45 16 22 N -0.58 -6.15 5.97 31.48 0.19 -5.96 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.57 7.77 -51.93 -0.40 0.16 16 27 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.35 4.32 6.49 -39.29 -0.26 4.07 16 29 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.08 1.60 7.53 -51.93 -0.39 1.21 16 31 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 32 H 0.05 1.19 6.62 -51.93 -0.34 0.84 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 36 H 0.03 0.50 6.57 -51.93 -0.34 0.15 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.43 3.78 8.96 -185.34 -1.66 2.12 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -33.17 318.32 -8.00 -41.17 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.77 Total: 0.64 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 0.27 Total: -8.18 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.37 Total: -45.82 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.10 Total: -9.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.17 -8.00 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393909585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.628 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds