Wall clock time and date at job start Mon Mar 30 2020 04:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20767 * 120.00148 * 2 1 4 4 C 1.50703 * 120.00215 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.50023 * 329.91653 * 4 2 1 6 6 C 1.53106 * 109.50596 * 89.99772 * 4 2 1 7 7 C 1.53126 * 109.16174 * 177.63531 * 6 4 2 8 8 C 1.53035 * 109.27743 * 302.34597 * 7 6 4 9 9 N 1.46848 * 109.52105 * 59.17911 * 8 7 6 10 10 C 1.46903 * 110.99794 * 174.16285 * 9 8 7 11 11 C 1.52996 * 109.47380 * 66.04287 * 10 9 8 12 12 O 1.42899 * 109.47332 * 64.99936 * 11 10 9 13 13 C 1.42899 * 114.00262 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47147 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27927 * 14 13 12 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 13 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 C 1.46851 * 111.19652 * 298.25314 * 9 8 7 23 23 H 1.08994 * 109.47050 * 239.99404 * 1 2 3 24 24 H 1.09004 * 109.46926 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46852 * 119.99982 * 1 2 3 26 26 H 1.09004 * 109.52774 * 57.73134 * 6 4 2 27 27 H 1.09003 * 109.57641 * 297.57139 * 6 4 2 28 28 H 1.09000 * 109.50456 * 182.39994 * 7 6 4 29 29 H 1.09002 * 109.53175 * 62.30689 * 7 6 4 30 30 H 1.08991 * 109.46215 * 299.16157 * 8 7 6 31 31 H 1.09002 * 109.45032 * 179.18834 * 8 7 6 32 32 H 1.09000 * 109.46683 * 306.04167 * 10 9 8 33 33 H 1.09002 * 109.47167 * 186.04782 * 10 9 8 34 34 H 1.08997 * 109.47189 * 305.00140 * 11 10 9 35 35 H 1.09000 * 109.47355 * 185.00322 * 11 10 9 36 36 H 1.09000 * 109.46955 * 59.99734 * 13 12 11 37 37 H 1.09007 * 109.46697 * 300.00236 * 13 12 11 38 38 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.45936 * 181.76014 * 22 9 8 40 40 H 1.08997 * 109.46463 * 301.73118 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0459 0.0000 4 6 2.2606 -1.3051 -0.0006 5 1 1.6726 -2.0650 0.5141 6 6 2.5161 -1.7472 -1.4440 7 6 3.3329 -3.0424 -1.4358 8 6 4.6413 -2.8098 -0.6768 9 7 4.3429 -2.3894 0.6982 10 6 5.5719 -2.2906 1.4968 11 6 6.4450 -1.1587 0.9514 12 8 5.7745 0.0900 1.1333 13 6 6.5088 1.2190 0.6555 14 6 5.7123 2.4752 0.8976 15 1 4.7423 2.4172 1.3689 16 6 6.2194 3.6979 0.5119 17 7 5.5219 4.7938 0.7182 18 14 7.8969 3.7982 -0.3038 19 1 7.7397 3.6782 -1.7755 20 1 8.5285 5.1022 0.0219 21 1 8.7561 2.6940 0.1939 22 6 3.6000 -1.1228 0.7168 23 1 -0.3633 -0.5139 0.8899 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 3.0707 -0.9702 -1.9703 27 1 1.5646 -1.9198 -1.9470 28 1 3.5546 -3.3394 -2.4608 29 1 2.7620 -3.8301 -0.9441 30 1 5.2181 -2.0322 -1.1773 31 1 5.2186 -3.7342 -0.6569 32 1 6.1191 -3.2315 1.4394 33 1 5.3146 -2.0828 2.5354 34 1 6.6287 -1.3211 -0.1106 35 1 7.3947 -1.1425 1.4861 36 1 6.6943 1.1061 -0.4126 37 1 7.4596 1.2843 1.1845 38 1 5.8788 5.6540 0.4472 39 1 3.4212 -0.8219 1.7491 40 1 4.1818 -0.3531 0.2097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395369405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:31 Heat of formation + Delta-G solvation = -84.235307 kcal Electronic energy + Delta-G solvation = -20212.945298 eV Core-core repulsion = 17220.815042 eV Total energy + Delta-G solvation = -2992.130256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.87663 -38.26519 -36.51808 -33.71603 -32.45435 -31.14924 -29.60327 -28.82321 -27.30324 -24.20779 -23.39701 -21.78076 -21.71774 -19.63956 -18.90690 -16.78453 -16.22671 -15.72841 -15.38191 -15.21558 -14.76778 -14.62015 -14.47682 -13.99594 -13.62644 -13.42212 -12.96992 -12.75249 -12.44901 -12.26388 -12.10957 -11.82920 -11.75807 -11.44478 -11.11269 -11.01174 -10.87681 -10.73767 -10.65192 -10.49029 -10.12772 -9.81891 -9.11149 -9.08013 -8.80917 -8.44214 -7.81376 -6.02773 -4.00910 2.38101 3.27344 3.33994 3.35053 4.00816 4.40717 4.46620 4.67459 4.96128 4.97071 5.03314 5.27406 5.29523 5.31973 5.45864 5.50789 5.53749 5.61585 5.65201 5.73923 5.76810 5.82838 5.90089 5.96503 6.02634 6.04574 6.18996 6.28619 6.33528 6.46362 6.60913 6.87737 7.02640 7.35791 7.39251 7.65823 7.97181 8.03232 8.70831 9.12936 9.56053 11.10424 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.007379 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.480676 B = 3793.689874 C = 4751.964439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.340 3.660 3 O -0.419 6.419 4 C -0.132 4.132 5 H 0.092 0.908 6 C -0.108 4.108 7 C -0.110 4.110 8 C 0.047 3.953 9 N -0.535 5.535 10 C 0.061 3.939 11 C 0.017 3.983 12 O -0.368 6.368 13 C 0.167 3.833 14 C -0.510 4.510 15 H 0.086 0.914 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.872 3.128 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.058 3.942 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.041 0.959 36 H -0.006 1.006 37 H 0.001 0.999 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 -17.336 -3.401 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.212 3.788 3 O -0.289 6.289 4 C -0.152 4.152 5 H 0.110 0.890 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.081 4.081 9 N -0.258 5.258 10 C -0.068 4.068 11 C -0.062 4.062 12 O -0.288 6.288 13 C 0.092 3.908 14 C -0.548 4.548 15 H 0.104 0.896 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.069 4.069 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.011 0.989 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.947 -16.891 -3.122 18.177 hybrid contribution 1.656 0.695 -0.946 2.030 sum -4.290 -16.196 -4.068 17.241 Atomic orbital electron populations 1.22313 0.95136 1.04578 1.03793 1.24550 0.91573 0.90444 0.72244 1.90633 1.71498 1.34400 1.32395 1.21768 0.98556 0.96859 0.97994 0.88994 1.21471 1.00288 0.98073 0.94721 1.21521 0.96270 0.97431 0.99560 1.22126 0.96816 0.99740 0.89420 1.62154 1.20451 1.31762 1.11431 1.22240 0.89714 0.96150 0.98668 1.23109 0.96419 0.87633 0.99071 1.88061 1.43990 1.13445 1.83268 1.20602 0.92490 0.85254 0.92432 1.20877 1.05864 0.88023 1.40071 0.89628 1.24750 0.97149 0.95422 0.95581 1.69887 1.37694 0.98080 1.47570 0.86921 0.85079 0.77822 0.80300 1.20107 1.20801 1.19297 1.22291 0.92219 0.90821 1.01535 0.89449 0.90234 0.89613 0.91515 0.91702 0.91603 0.91168 0.94469 0.91227 0.90088 0.89935 0.94440 0.94052 0.98853 0.98181 0.92541 0.90806 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 10.24 36.01 0.37 -1.86 16 2 C 0.34 5.40 6.33 -29.03 -0.18 5.22 16 3 O -0.42 -9.31 16.89 5.99 0.10 -9.21 16 4 C -0.13 -1.87 2.62 -91.70 -0.24 -2.11 16 5 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 6 C -0.11 -1.34 5.27 -26.61 -0.14 -1.48 16 7 C -0.11 -1.21 6.09 -26.65 -0.16 -1.38 16 8 C 0.05 0.61 5.06 -3.83 -0.02 0.59 16 9 N -0.53 -7.92 4.86 -234.67 -1.14 -9.06 16 10 C 0.06 0.88 5.93 -3.82 -0.02 0.86 16 11 C 0.02 0.30 5.75 37.16 0.21 0.51 16 12 O -0.37 -8.57 6.77 -35.23 -0.24 -8.81 16 13 C 0.17 4.39 4.76 36.01 0.17 4.56 16 14 C -0.51 -15.73 9.99 -34.44 -0.34 -16.07 16 15 H 0.09 2.93 8.06 -52.49 -0.42 2.51 16 16 C 0.07 2.21 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -28.64 13.96 55.43 0.77 -27.86 16 18 Si 0.87 22.21 27.46 -169.99 -4.67 17.54 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.55 6.55 56.52 0.37 -6.18 16 22 C 0.06 1.02 3.12 -3.83 -0.01 1.01 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.56 6.65 -51.93 -0.35 0.21 16 31 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.65 6.46 -51.93 -0.34 0.31 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H -0.01 -0.16 7.56 -51.93 -0.39 -0.55 16 37 H 0.00 0.01 7.21 -51.93 -0.37 -0.36 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 40 H 0.09 2.06 5.27 -51.93 -0.27 1.79 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -34.74 316.47 -7.67 -42.41 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.79 Total: -1.75 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.47 Total: -8.03 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.37 Total: -36.92 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.14 Total: -18.02 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.74 -7.67 -42.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395369405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.825 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds