Wall clock time and date at job start Mon Mar 30 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00684 * 2 1 4 4 C 1.50699 * 109.47188 * 270.00043 * 3 2 1 5 5 H 1.07997 * 119.99775 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00206 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00135 * 179.97438 * 6 4 3 8 8 Si 1.86809 * 119.99903 * 0.02562 * 6 4 3 9 9 H 1.48491 * 109.47031 * 89.99394 * 8 6 4 10 10 H 1.48496 * 109.47080 * 209.99706 * 8 6 4 11 11 H 1.48498 * 109.46788 * 329.99406 * 8 6 4 12 12 C 1.34785 * 119.99695 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99905 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99967 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.46724 * 186.14462 * 14 12 2 16 16 C 1.47904 * 110.99498 * 176.61756 * 15 14 12 17 17 C 1.53994 * 107.22346 * 214.25647 * 16 15 14 18 18 C 1.54593 * 105.14198 * 1.12349 * 17 16 15 19 19 C 1.53002 * 110.72464 * 140.49443 * 18 17 16 20 20 N 1.46895 * 110.72758 * 263.60343 * 18 17 16 21 21 C 1.48807 * 111.18595 * 59.28350 * 15 14 12 22 22 H 1.08997 * 109.47180 * 269.99939 * 1 2 3 23 23 H 1.09000 * 109.46419 * 30.00053 * 1 2 3 24 24 H 1.09002 * 109.47233 * 149.99774 * 1 2 3 25 25 H 1.09005 * 109.46792 * 29.99637 * 3 2 1 26 26 H 1.08993 * 109.47617 * 149.99771 * 3 2 1 27 27 H 0.97001 * 119.99550 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46596 * 66.14703 * 14 12 2 29 29 H 1.08999 * 109.46999 * 306.14474 * 14 12 2 30 30 H 1.08996 * 109.92191 * 94.80438 * 16 15 14 31 31 H 1.09002 * 109.91529 * 333.70172 * 16 15 14 32 32 H 1.09002 * 110.31252 * 120.04361 * 17 16 15 33 33 H 1.09002 * 110.30716 * 242.10744 * 17 16 15 34 34 H 1.08993 * 109.47022 * 61.45609 * 19 18 17 35 35 H 1.09004 * 109.46718 * 181.45495 * 19 18 17 36 36 H 1.09002 * 109.47103 * 301.45515 * 19 18 17 37 37 H 1.00902 * 110.99593 * 298.54542 * 20 18 17 38 38 H 1.00900 * 110.99996 * 62.49399 * 20 18 17 39 39 H 1.08994 * 110.52163 * 41.06383 * 21 15 14 40 40 H 1.09002 * 110.69614 * 278.01986 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4489 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1263 2.8777 -1.6728 7 7 3.3460 3.2571 -2.9127 8 14 3.7334 3.9290 -0.2529 9 1 5.1068 3.5077 0.1230 10 1 3.7484 5.3557 -0.6644 11 1 2.8274 3.7591 0.9114 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4724 -0.0005 15 7 2.3331 -3.5850 0.1471 16 6 1.6220 -4.8791 0.2324 17 6 2.4280 -5.7802 1.1862 18 6 3.6168 -4.9105 1.6554 19 6 3.9059 -5.1439 3.1396 20 7 4.8118 -5.1831 0.8458 21 6 3.1074 -3.4675 1.4124 22 1 -0.3633 0.0000 1.0276 23 1 -0.3632 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1383 0.5138 27 1 3.8223 4.0834 -3.0899 28 1 0.8434 -2.5789 -0.9402 29 1 0.6790 -2.4841 0.8296 30 1 1.5670 -5.3384 -0.7545 31 1 0.6175 -4.7255 0.6269 32 1 1.8146 -6.0738 2.0381 33 1 2.7883 -6.6631 0.6583 34 1 4.1774 -6.1876 3.2970 35 1 4.7293 -4.5028 3.4545 36 1 3.0170 -4.9074 3.7245 37 1 5.0989 -6.1460 0.9378 38 1 4.6555 -4.9433 -0.1218 39 1 2.4601 -3.1455 2.2280 40 1 3.9441 -2.7797 1.2895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405736143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:33 Heat of formation + Delta-G solvation = -18.836213 kcal Electronic energy + Delta-G solvation = -19762.260681 eV Core-core repulsion = 16805.259093 eV Total energy + Delta-G solvation = -2957.001588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89369 -38.45956 -34.97022 -34.35945 -32.50584 -30.40448 -29.25517 -28.77310 -27.19455 -25.85959 -24.80910 -22.22290 -20.99928 -19.59847 -18.42937 -16.93373 -16.60391 -16.10216 -15.57361 -15.41977 -15.05319 -14.55272 -14.28402 -13.94377 -13.38624 -13.15654 -12.88434 -12.63804 -12.43798 -12.23952 -12.09630 -12.02292 -11.95917 -11.62068 -11.45482 -11.20086 -10.99910 -10.86927 -10.65959 -10.49613 -10.11164 -9.50519 -8.95321 -8.64146 -8.55910 -8.28504 -7.65963 -6.05652 -4.04246 3.31431 3.37037 3.37805 3.39396 3.64208 4.17088 4.41107 4.42380 4.50339 4.66370 4.87876 5.06424 5.16899 5.27889 5.29204 5.35096 5.45917 5.54833 5.56686 5.64257 5.67486 5.75964 5.81249 5.85083 5.92298 6.07655 6.14538 6.38893 6.68376 6.89978 6.91898 7.03691 7.25937 7.37677 7.56152 7.64071 8.27457 8.50383 8.96885 9.04368 9.54712 11.07872 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.030291 B = 0.005059 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.139068 B = 5532.862133 C = 5860.127874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.506 3.494 13 O -0.519 6.519 14 C 0.032 3.968 15 N -0.498 5.498 16 C 0.033 3.967 17 C -0.162 4.162 18 C 0.114 3.886 19 C -0.133 4.133 20 N -0.829 5.829 21 C 0.044 3.956 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.264 0.736 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.333 0.667 38 H 0.354 0.646 39 H 0.041 0.959 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -16.912 10.569 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.334 5.334 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.395 6.395 14 C -0.100 4.100 15 N -0.222 5.222 16 C -0.095 4.095 17 C -0.202 4.202 18 C 0.020 3.980 19 C -0.192 4.192 20 N -0.359 5.359 21 C -0.083 4.083 22 H 0.062 0.938 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.060 0.940 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.864 -16.161 10.452 19.851 hybrid contribution -1.146 -0.029 0.600 1.294 sum -6.010 -16.190 11.052 20.503 Atomic orbital electron populations 1.21644 0.81143 1.02959 1.00260 1.47842 1.06144 1.07088 1.72350 1.19642 0.92406 0.79952 0.98353 1.21332 1.36946 1.07065 0.91286 0.90784 1.24859 0.95229 0.97366 0.95553 1.69902 1.41545 1.23546 1.18658 0.86845 0.80170 0.79716 0.82917 1.19857 1.21097 1.19142 1.20127 0.88264 0.84661 0.77782 1.90661 1.13519 1.86723 1.48572 1.22235 0.94328 0.90836 1.02575 1.64615 1.21828 1.00203 1.35603 1.22886 0.96037 0.90728 0.99826 1.23318 0.98874 0.98707 0.99294 1.21674 0.88174 0.94419 0.93728 1.21712 1.02006 1.01672 0.93764 1.58712 1.34476 1.27156 1.15568 1.23521 0.98926 0.96576 0.89311 0.93832 0.90482 0.92355 0.95338 0.94571 0.92587 0.88144 0.92718 0.90449 0.93853 0.91212 0.91298 0.92729 0.91448 0.92434 0.85435 0.83087 0.94045 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.13 59.85 0.61 1.89 16 2 N -0.60 -12.49 2.86 -182.95 -0.52 -13.01 16 3 C 0.22 5.39 4.23 -5.20 -0.02 5.36 16 4 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 8 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 12 C 0.51 10.42 7.31 -10.98 -0.08 10.34 16 13 O -0.52 -12.87 13.89 5.56 0.08 -12.79 16 14 C 0.03 0.48 3.78 -4.97 -0.02 0.46 16 15 N -0.50 -7.35 5.00 -231.65 -1.16 -8.51 16 16 C 0.03 0.37 6.69 -2.75 -0.02 0.35 16 17 C -0.16 -1.57 6.23 -25.38 -0.16 -1.72 16 18 C 0.11 1.32 1.20 -129.74 -0.16 1.17 16 19 C -0.13 -1.33 8.81 37.16 0.33 -1.00 16 20 N -0.83 -9.93 9.01 2.23 0.02 -9.91 16 21 C 0.04 0.65 4.65 -1.74 -0.01 0.65 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 25 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 26 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.10 1.40 7.71 -51.93 -0.40 1.00 16 29 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.43 7.68 -51.93 -0.40 0.03 16 32 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.33 3.16 9.05 -39.29 -0.36 2.81 16 38 H 0.35 4.66 8.86 -39.29 -0.35 4.31 16 39 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16 40 H 0.11 2.14 6.46 -51.93 -0.34 1.81 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -34.12 318.44 -7.32 -41.43 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.67 Total: 4.31 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 0.03 Total: 3.79 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.89 Total: -58.73 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.12 -7.32 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405736143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.597 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds