Wall clock time and date at job start Mon Mar 30 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 119.99814 * 2 1 4 4 C 1.50702 * 109.47574 * 270.00006 * 3 2 1 5 5 H 1.08002 * 119.99441 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00075 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00481 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99886 * 179.73007 * 6 4 3 9 9 H 1.48494 * 109.47225 * 180.27306 * 8 6 4 10 10 H 1.48506 * 109.46866 * 300.27330 * 8 6 4 11 11 H 1.48498 * 109.47306 * 60.26614 * 8 6 4 12 12 C 1.34780 * 120.00071 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99936 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99729 * 359.97438 * 12 2 1 15 15 N 1.46904 * 109.46925 * 180.02562 * 14 12 2 16 16 C 1.47437 * 111.00125 * 69.87110 * 15 14 12 17 17 C 1.54321 * 107.23152 * 123.25959 * 16 15 14 18 18 C 1.55140 * 103.01940 * 22.28573 * 17 16 15 19 19 C 1.52999 * 110.99035 * 206.21748 * 18 17 16 20 20 N 1.46897 * 110.99111 * 82.43658 * 18 17 16 21 21 C 1.47844 * 110.99973 * 190.71732 * 15 14 12 22 22 H 1.09000 * 109.47385 * 90.00206 * 1 2 3 23 23 H 1.09008 * 109.47270 * 209.99718 * 1 2 3 24 24 H 1.09000 * 109.47529 * 329.99746 * 1 2 3 25 25 H 1.09009 * 109.47230 * 150.00346 * 3 2 1 26 26 H 1.08998 * 109.47557 * 30.00838 * 3 2 1 27 27 H 0.97005 * 119.99656 * 359.72741 * 7 6 4 28 28 H 1.08996 * 109.47409 * 299.99863 * 14 12 2 29 29 H 1.09001 * 109.47279 * 60.00576 * 14 12 2 30 30 H 1.09004 * 109.89201 * 242.66075 * 16 15 14 31 31 H 1.09001 * 109.89322 * 3.69550 * 16 15 14 32 32 H 1.09000 * 110.70696 * 140.66659 * 17 16 15 33 33 H 1.09003 * 110.70707 * 263.90020 * 17 16 15 34 34 H 1.09003 * 109.47250 * 58.54715 * 19 18 17 35 35 H 1.09001 * 109.47173 * 178.54088 * 19 18 17 36 36 H 1.09002 * 109.47516 * 298.54429 * 19 18 17 37 37 H 1.00896 * 110.99919 * 61.45975 * 20 18 17 38 38 H 1.00909 * 111.00033 * 185.40542 * 20 18 17 39 39 H 1.08998 * 110.37622 * 332.46275 * 21 15 14 40 40 H 1.09002 * 110.37486 * 94.80285 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6726 7 7 3.5541 3.6177 -0.6730 8 14 3.4448 3.4130 -3.4338 9 1 4.1924 4.6960 -3.4337 10 1 4.2449 2.3738 -4.1303 11 1 2.1498 3.5947 -4.1374 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5889 -0.0005 16 6 3.0434 -3.6827 1.2918 17 6 2.7965 -5.1022 1.8447 18 6 2.4428 -5.9162 0.5723 19 6 1.5646 -7.1203 0.9185 20 7 3.6580 -6.3408 -0.1355 21 6 1.6535 -4.8729 -0.2572 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 3.1499 1.1384 0.5138 26 1 1.6084 2.0283 0.5139 27 1 3.3886 3.3398 0.2415 28 1 0.7591 -2.5303 0.8896 29 1 0.7584 -2.5299 -0.8903 30 1 4.1116 -3.5225 1.1452 31 1 2.6486 -2.9388 1.9839 32 1 3.6980 -5.4947 2.3151 33 1 1.9627 -5.1027 2.5468 34 1 0.6513 -6.7763 1.4040 35 1 1.3100 -7.6587 0.0056 36 1 2.1067 -7.7836 1.5924 37 1 4.2238 -6.9411 0.4456 38 1 3.4289 -6.7935 -1.0078 39 1 0.6184 -4.8239 0.0807 40 1 1.6960 -5.1205 -1.3179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405736209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:36 Heat of formation + Delta-G solvation = -24.918644 kcal Electronic energy + Delta-G solvation = -19612.566039 eV Core-core repulsion = 16655.300697 eV Total energy + Delta-G solvation = -2957.265342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.80537 -38.42890 -35.00500 -34.37261 -32.76438 -30.38507 -29.19125 -28.26432 -26.96821 -25.64987 -24.55954 -22.65173 -21.03954 -19.86126 -18.38312 -16.88202 -16.37853 -16.22169 -15.66350 -15.54791 -14.99975 -14.49794 -13.73910 -13.61938 -13.44321 -13.27073 -13.06057 -12.96025 -12.50886 -12.28190 -12.25288 -11.92283 -11.73168 -11.55447 -11.22840 -11.19615 -10.88927 -10.79261 -10.73011 -10.51515 -10.04304 -9.05221 -8.87921 -8.78722 -8.32099 -8.00543 -7.53090 -6.32193 -4.03303 3.45253 3.49027 3.53462 3.69484 3.73791 4.16166 4.27772 4.41753 4.60344 4.62851 4.83911 5.07136 5.19733 5.24771 5.30444 5.34693 5.43638 5.50133 5.60397 5.61030 5.63572 5.70600 5.76244 5.79489 5.92379 5.99119 6.14340 6.43830 6.82575 7.02712 7.12778 7.16828 7.23280 7.33350 7.49966 8.11307 8.38170 8.50881 8.84947 9.15788 9.66211 11.05183 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.004494 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.188983 B = 6229.502482 C = 6431.213116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.605 5.605 3 C 0.238 3.762 4 C -0.603 4.603 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 1.072 2.928 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.505 3.495 13 O -0.519 6.519 14 C 0.033 3.967 15 N -0.498 5.498 16 C 0.065 3.935 17 C -0.132 4.132 18 C 0.105 3.895 19 C -0.174 4.174 20 N -0.821 5.821 21 C 0.058 3.942 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.020 0.980 27 H 0.267 0.733 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.338 0.662 38 H 0.341 0.659 39 H 0.046 0.954 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -19.999 4.493 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.339 5.339 3 C 0.118 3.882 4 C -0.642 4.642 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.548 5.548 8 Si 0.900 3.100 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.215 1.215 12 C 0.291 3.709 13 O -0.394 6.394 14 C -0.098 4.098 15 N -0.222 5.222 16 C -0.062 4.062 17 C -0.171 4.171 18 C 0.011 3.989 19 C -0.234 4.234 20 N -0.351 5.351 21 C -0.070 4.070 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.064 0.936 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.246 -17.880 3.154 19.200 hybrid contribution -1.956 -2.308 1.599 3.422 sum -8.202 -20.188 4.753 22.303 Atomic orbital electron populations 1.21591 0.81525 1.01377 1.01164 1.47963 1.05975 1.07450 1.72474 1.19313 0.91934 0.78913 0.98073 1.22258 1.40522 1.09433 0.92019 0.93101 1.25809 0.93316 0.93349 1.06032 1.70807 1.44179 1.39713 1.00056 0.83508 0.76391 0.76247 0.73890 1.20702 1.21345 1.21518 1.20153 0.88301 0.84585 0.77906 1.90674 1.13586 1.86778 1.48358 1.22262 0.94353 0.91397 1.01836 1.63173 1.25481 1.01108 1.32417 1.22632 1.01256 0.94025 0.88312 1.22906 1.01594 0.96464 0.96092 1.21873 0.89731 0.93386 0.93917 1.22489 1.00619 0.98548 1.01703 1.58622 1.18902 1.49543 1.08038 1.23063 0.94921 0.88535 1.00501 0.93184 0.92802 0.91574 0.94943 0.96262 0.92319 0.92873 0.88738 0.89581 0.93535 0.90649 0.91480 0.91993 0.92433 0.92427 0.84892 0.84579 0.93555 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.28 59.85 0.62 2.05 16 2 N -0.60 -13.42 2.86 -182.95 -0.52 -13.95 16 3 C 0.24 6.42 4.52 -5.20 -0.02 6.39 16 4 C -0.60 -17.95 9.39 -34.44 -0.32 -18.28 16 5 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 7 N -0.91 -28.52 13.65 55.43 0.76 -27.76 16 8 Si 1.07 26.40 29.90 -169.99 -5.08 21.32 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.51 11.11 7.32 -10.98 -0.08 11.03 16 13 O -0.52 -13.83 15.12 5.56 0.08 -13.75 16 14 C 0.03 0.53 3.58 -4.97 -0.02 0.52 16 15 N -0.50 -7.97 4.85 -232.69 -1.13 -9.09 16 16 C 0.07 1.00 5.64 -2.84 -0.02 0.98 16 17 C -0.13 -1.45 6.10 -24.91 -0.15 -1.61 16 18 C 0.10 1.04 1.11 -129.47 -0.14 0.90 16 19 C -0.17 -1.28 8.96 37.16 0.33 -0.95 16 20 N -0.82 -8.24 9.03 2.45 0.02 -8.22 16 21 C 0.06 0.69 5.85 -2.30 -0.01 0.68 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.68 6.44 -51.92 -0.33 0.35 16 24 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 25 H 0.03 0.98 7.29 -51.92 -0.38 0.60 16 26 H 0.02 0.52 7.76 -51.93 -0.40 0.11 16 27 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 28 H 0.05 0.73 7.22 -51.93 -0.38 0.35 16 29 H 0.09 1.38 8.04 -51.93 -0.42 0.97 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 34 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.34 2.79 9.07 -39.29 -0.36 2.44 16 38 H 0.34 2.95 9.07 -39.29 -0.36 2.59 16 39 H 0.05 0.48 7.68 -51.93 -0.40 0.08 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -35.92 322.73 -7.61 -43.53 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.68 Total: 0.87 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 0.08 Total: 2.19 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.87 Total: -59.02 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -5.08 Total: 21.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.92 -7.61 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405736209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.609 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds