Wall clock time and date at job start Mon Mar 30 2020 04:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42893 * 109.47528 * 2 1 4 4 C 1.42898 * 114.00476 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47299 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.30568 * 54.29994 * 5 4 3 7 7 C 1.54389 * 110.34177 * 292.12284 * 5 4 3 8 8 N 1.48317 * 104.53699 * 217.33483 * 7 5 4 9 9 C 1.34776 * 127.76710 * 219.53185 * 8 7 5 10 10 O 1.21696 * 119.99575 * 179.97438 * 9 8 7 11 11 C 1.46373 * 120.00216 * 359.91686 * 9 8 7 12 12 H 1.07999 * 119.99861 * 353.55036 * 11 9 8 13 13 C 1.40049 * 119.99668 * 173.55644 * 11 9 8 14 14 N 1.30669 * 120.00513 * 6.01509 * 13 11 9 15 15 Si 1.86804 * 119.99570 * 186.01505 * 13 11 9 16 16 H 1.48496 * 109.47137 * 94.98777 * 15 13 11 17 17 H 1.48504 * 109.46873 * 214.98379 * 15 13 11 18 18 H 1.48500 * 109.47254 * 334.98482 * 15 13 11 19 19 C 1.48142 * 104.38978 * 39.46196 * 8 7 5 20 20 C 1.54285 * 110.34246 * 176.47534 * 5 4 3 21 21 C 1.53001 * 110.34084 * 237.73921 * 20 5 4 22 22 C 1.52996 * 110.34419 * 359.89036 * 20 5 4 23 23 H 1.09006 * 109.46776 * 299.99975 * 1 2 3 24 24 H 1.08994 * 109.47124 * 60.00108 * 1 2 3 25 25 H 1.09001 * 109.47267 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47127 * 119.99895 * 2 1 3 27 27 H 1.09003 * 109.47024 * 239.99569 * 2 1 3 28 28 H 1.08996 * 109.46956 * 299.99866 * 4 3 2 29 29 H 1.09005 * 109.46868 * 59.99797 * 4 3 2 30 30 H 1.09001 * 110.41127 * 336.04792 * 7 5 4 31 31 H 1.08997 * 110.40753 * 98.48017 * 7 5 4 32 32 H 0.96992 * 120.00619 * 180.02562 * 14 13 11 33 33 H 1.09000 * 110.40693 * 201.68499 * 19 8 7 34 34 H 1.09006 * 110.50533 * 79.31104 * 19 8 7 35 35 H 1.09001 * 109.46821 * 60.00277 * 21 20 5 36 36 H 1.09002 * 109.47390 * 179.97438 * 21 20 5 37 37 H 1.09000 * 109.47379 * 299.99994 * 21 20 5 38 38 H 1.09010 * 109.46700 * 60.00283 * 22 20 5 39 39 H 1.08997 * 109.47620 * 180.02562 * 22 20 5 40 40 H 1.08992 * 109.47263 * 300.00530 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3470 3.4578 0.8290 7 6 3.4366 3.5970 -1.3423 8 7 4.5426 4.5434 -1.6266 9 6 4.4544 5.7840 -2.1459 10 8 5.4621 6.4434 -2.3209 11 6 3.1466 6.3377 -2.5006 12 1 2.2644 5.7173 -2.4447 13 6 3.0396 7.6720 -2.9125 14 7 4.1173 8.3884 -3.0935 15 14 1.3561 8.4274 -3.2032 16 1 0.9153 9.1408 -1.9777 17 1 1.4327 9.3870 -4.3340 18 1 0.3819 7.3551 -3.5292 19 6 5.7647 3.8176 -1.2093 20 6 5.3588 3.0842 0.0871 21 6 5.7443 3.9163 1.3119 22 6 6.0214 1.7066 0.1513 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.8340 0.9764 0.8891 29 1 3.8333 0.9766 -0.8908 30 1 3.3681 2.8457 -2.1290 31 1 2.4922 4.1320 -1.2432 32 1 4.0432 9.3126 -3.3785 33 1 6.5747 4.5196 -1.0112 34 1 6.0629 3.1006 -1.9743 35 1 5.3814 3.4241 2.2142 36 1 6.8291 4.0100 1.3608 37 1 5.2968 4.9071 1.2334 38 1 5.7692 1.1400 -0.7452 39 1 7.1030 1.8261 0.2138 40 1 5.6639 1.1721 1.0314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409429980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:29 Heat of formation + Delta-G solvation = -92.247971 kcal Electronic energy + Delta-G solvation = -19862.754567 eV Core-core repulsion = 16870.276856 eV Total energy + Delta-G solvation = -2992.477711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54627 -37.58248 -36.15655 -32.75260 -32.33721 -31.76566 -29.55073 -27.34821 -26.99887 -24.73951 -24.66566 -22.78988 -21.59318 -19.27357 -18.18525 -16.76269 -16.49005 -16.02221 -15.48341 -15.00518 -14.44458 -14.11259 -13.88140 -13.69652 -13.43385 -12.95001 -12.65328 -12.46795 -12.27573 -11.91130 -11.80160 -11.63429 -11.36222 -11.22737 -11.12200 -11.00549 -10.96803 -10.80080 -10.42649 -10.26128 -10.14269 -10.06829 -9.94929 -9.44245 -8.82176 -7.59903 -7.20298 -6.17688 -4.59976 3.16504 3.23549 3.27627 3.70586 4.11866 4.56280 4.61715 4.90331 4.94612 4.99796 5.02872 5.18958 5.28893 5.38229 5.46642 5.53042 5.59616 5.70730 5.76323 5.80665 5.83281 5.85853 5.96011 6.03954 6.05498 6.10906 6.22450 6.40463 6.45355 6.50935 6.67058 6.71290 6.73897 7.29602 7.36221 7.48300 8.15798 8.47784 9.05724 9.56989 10.60850 10.79980 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.006586 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.700877 B = 4250.261721 C = 5524.627767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.386 6.386 4 C 0.073 3.927 5 C -0.094 4.094 6 H 0.084 0.916 7 C 0.128 3.872 8 N -0.645 5.645 9 C 0.577 3.423 10 O -0.578 6.578 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.119 3.881 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.141 4.141 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -15.780 7.547 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.003 4.003 5 C -0.114 4.114 6 H 0.102 0.898 7 C 0.003 3.997 8 N -0.384 5.384 9 C 0.384 3.616 10 O -0.460 6.460 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.005 4.005 20 C -0.074 4.074 21 C -0.189 4.189 22 C -0.198 4.198 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.676 -14.922 7.317 16.833 hybrid contribution -0.697 -0.009 -0.089 0.703 sum -3.373 -14.930 7.228 16.928 Atomic orbital electron populations 1.21738 0.93982 1.01847 1.03307 1.22395 0.95493 0.84386 0.99615 1.87930 1.21655 1.25684 1.95318 1.22745 0.80571 0.97187 0.99802 1.22205 0.94993 0.93695 1.00485 0.89803 1.21964 0.92844 0.91854 0.93045 1.49278 1.04770 1.15774 1.68589 1.18011 0.90660 0.76547 0.76375 1.90607 1.38616 1.58138 1.58672 1.20883 0.92480 0.96641 1.47498 0.91170 1.25716 0.97475 0.97018 0.92973 1.70026 1.28814 1.07882 1.33071 0.86366 0.82819 0.79301 0.78368 1.19768 1.20439 1.18794 1.21985 0.91245 0.94636 0.92682 1.21475 0.93770 0.95334 0.96868 1.21805 1.00977 1.00243 0.95896 1.21953 1.00504 0.95976 1.01406 0.91923 0.91676 0.91481 0.93891 0.93679 0.93289 0.93132 0.93549 0.90331 0.92123 0.91046 0.93614 0.93176 0.92779 0.91933 0.92421 0.92534 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.61 6.66 37.16 0.25 0.86 16 3 O -0.39 -5.43 10.20 -35.23 -0.36 -5.79 16 4 C 0.07 0.96 4.06 37.16 0.15 1.11 16 5 C -0.09 -1.49 2.98 -89.22 -0.27 -1.76 16 6 H 0.08 1.39 7.71 -51.93 -0.40 0.99 16 7 C 0.13 2.51 6.27 -2.31 -0.01 2.49 16 8 N -0.65 -15.36 3.32 -170.82 -0.57 -15.93 16 9 C 0.58 17.08 7.84 -12.99 -0.10 16.98 16 10 O -0.58 -19.31 15.31 5.19 0.08 -19.23 16 11 C -0.54 -15.66 9.02 -35.63 -0.32 -15.99 16 12 H 0.07 1.90 6.60 -52.49 -0.35 1.56 16 13 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 14 N -0.77 -23.47 11.85 55.55 0.66 -22.81 16 15 Si 0.91 20.61 29.56 -169.99 -5.03 15.58 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 18 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 19 C 0.12 2.34 6.15 -2.41 -0.01 2.33 16 20 C -0.07 -1.12 1.03 -153.11 -0.16 -1.28 16 21 C -0.13 -1.96 8.23 37.16 0.31 -1.66 16 22 C -0.14 -1.65 7.28 37.16 0.27 -1.38 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.56 6.58 -51.93 -0.34 0.21 16 29 H 0.05 0.63 6.89 -51.93 -0.36 0.27 16 30 H 0.05 0.87 7.78 -51.93 -0.40 0.46 16 31 H 0.08 1.64 6.77 -51.93 -0.35 1.29 16 32 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 33 H 0.07 1.54 7.60 -51.93 -0.39 1.14 16 34 H 0.05 0.85 7.84 -51.93 -0.41 0.44 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.65 6.86 -51.92 -0.36 0.29 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -34.66 319.78 -6.66 -41.31 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.65 Total: -1.04 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 0.38 Total: 3.09 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.09 Total: -38.74 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.28 Total: -25.02 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.66 -6.66 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409429980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.936 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds