Wall clock time and date at job start Mon Mar 30 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42893 * 109.47528 * 2 1 4 4 C 1.42898 * 114.00476 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47299 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.30568 * 54.29994 * 5 4 3 7 7 C 1.54389 * 110.34177 * 292.12284 * 5 4 3 8 8 N 1.48317 * 104.53699 * 217.33483 * 7 5 4 9 9 C 1.34776 * 127.76710 * 219.53185 * 8 7 5 10 10 O 1.21696 * 119.99575 * 179.97438 * 9 8 7 11 11 C 1.46373 * 120.00216 * 359.91686 * 9 8 7 12 12 H 1.07999 * 119.99861 * 353.55036 * 11 9 8 13 13 C 1.40049 * 119.99668 * 173.55644 * 11 9 8 14 14 N 1.30669 * 120.00513 * 6.01509 * 13 11 9 15 15 Si 1.86804 * 119.99570 * 186.01505 * 13 11 9 16 16 H 1.48496 * 109.47137 * 94.98777 * 15 13 11 17 17 H 1.48504 * 109.46873 * 214.98379 * 15 13 11 18 18 H 1.48500 * 109.47254 * 334.98482 * 15 13 11 19 19 C 1.48142 * 104.38978 * 39.46196 * 8 7 5 20 20 C 1.54285 * 110.34246 * 176.47534 * 5 4 3 21 21 C 1.53001 * 110.34084 * 237.73921 * 20 5 4 22 22 C 1.52996 * 110.34419 * 359.89036 * 20 5 4 23 23 H 1.09006 * 109.46776 * 299.99975 * 1 2 3 24 24 H 1.08994 * 109.47124 * 60.00108 * 1 2 3 25 25 H 1.09001 * 109.47267 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47127 * 119.99895 * 2 1 3 27 27 H 1.09003 * 109.47024 * 239.99569 * 2 1 3 28 28 H 1.08996 * 109.46956 * 299.99866 * 4 3 2 29 29 H 1.09005 * 109.46868 * 59.99797 * 4 3 2 30 30 H 1.09001 * 110.41127 * 336.04792 * 7 5 4 31 31 H 1.08997 * 110.40753 * 98.48017 * 7 5 4 32 32 H 0.96992 * 120.00619 * 180.02562 * 14 13 11 33 33 H 1.09000 * 110.40693 * 201.68499 * 19 8 7 34 34 H 1.09006 * 110.50533 * 79.31104 * 19 8 7 35 35 H 1.09001 * 109.46821 * 60.00277 * 21 20 5 36 36 H 1.09002 * 109.47390 * 179.97438 * 21 20 5 37 37 H 1.09000 * 109.47379 * 299.99994 * 21 20 5 38 38 H 1.09010 * 109.46700 * 60.00283 * 22 20 5 39 39 H 1.08997 * 109.47620 * 180.02562 * 22 20 5 40 40 H 1.08992 * 109.47263 * 300.00530 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3470 3.4578 0.8290 7 6 3.4366 3.5970 -1.3423 8 7 4.5426 4.5434 -1.6266 9 6 4.4544 5.7840 -2.1459 10 8 5.4621 6.4434 -2.3209 11 6 3.1466 6.3377 -2.5006 12 1 2.2644 5.7173 -2.4447 13 6 3.0396 7.6720 -2.9125 14 7 4.1173 8.3884 -3.0935 15 14 1.3561 8.4274 -3.2032 16 1 0.9153 9.1408 -1.9777 17 1 1.4327 9.3870 -4.3340 18 1 0.3819 7.3551 -3.5292 19 6 5.7647 3.8176 -1.2093 20 6 5.3588 3.0842 0.0871 21 6 5.7443 3.9163 1.3119 22 6 6.0214 1.7066 0.1513 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.8340 0.9764 0.8891 29 1 3.8333 0.9766 -0.8908 30 1 3.3681 2.8457 -2.1290 31 1 2.4922 4.1320 -1.2432 32 1 4.0432 9.3126 -3.3785 33 1 6.5747 4.5196 -1.0112 34 1 6.0629 3.1006 -1.9743 35 1 5.3814 3.4241 2.2142 36 1 6.8291 4.0100 1.3608 37 1 5.2968 4.9071 1.2334 38 1 5.7692 1.1400 -0.7452 39 1 7.1030 1.8261 0.2138 40 1 5.6639 1.1721 1.0314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409429980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:28 Heat of formation + Delta-G solvation = -116.406710 kcal Electronic energy + Delta-G solvation = -19863.802168 eV Core-core repulsion = 16870.276856 eV Total energy + Delta-G solvation = -2993.525313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98675 -38.89266 -37.99022 -34.74742 -34.25890 -32.72228 -30.74518 -29.06943 -28.45805 -26.48334 -26.04610 -23.56454 -23.00967 -21.26506 -19.55031 -18.45166 -17.83150 -17.51332 -17.00551 -16.35517 -16.18295 -15.61662 -15.39680 -14.97172 -14.54011 -14.38406 -14.23205 -13.72585 -13.49016 -13.39659 -13.13147 -12.92754 -12.83846 -12.76888 -12.67270 -12.38940 -12.31900 -12.17202 -12.02480 -11.98000 -11.43658 -11.41441 -11.29172 -10.96732 -10.38157 -9.90388 -9.17866 -8.34225 -6.88153 1.36172 1.37757 1.53862 2.20951 2.41112 2.74070 2.86597 3.46531 3.61199 3.76486 3.90606 4.19726 4.25420 4.30465 4.38094 4.42805 4.48904 4.58407 4.59783 4.70380 4.72288 4.80875 4.85460 4.88309 4.92537 5.04986 5.10111 5.12612 5.18337 5.29631 5.30527 5.33948 5.38771 5.42872 5.63515 5.99877 6.38782 6.42376 6.83227 7.47216 8.41767 8.63130 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.006586 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.700877 B = 4250.261721 C = 5524.627767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.080 3.920 5 C -0.085 4.085 6 H 0.074 0.926 7 C 0.126 3.874 8 N -0.656 5.656 9 C 0.558 3.442 10 O -0.633 6.633 11 C -0.567 4.567 12 H 0.082 0.918 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.997 3.003 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.250 1.250 19 C 0.112 3.888 20 C -0.062 4.062 21 C -0.130 4.130 22 C -0.135 4.135 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.276 0.724 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -18.349 8.627 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.336 6.336 4 C 0.004 3.996 5 C -0.105 4.105 6 H 0.093 0.907 7 C 0.002 3.998 8 N -0.393 5.393 9 C 0.365 3.635 10 O -0.521 6.521 11 C -0.603 4.603 12 H 0.100 0.900 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.815 3.185 16 H -0.186 1.186 17 H -0.192 1.192 18 H -0.173 1.173 19 C -0.012 4.012 20 C -0.064 4.064 21 C -0.187 4.187 22 C -0.192 4.192 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.151 -17.570 8.424 19.922 hybrid contribution -0.213 0.723 -0.421 0.863 sum -4.364 -16.847 8.004 19.155 Atomic orbital electron populations 1.21775 0.93508 1.03204 1.02385 1.22631 0.95978 0.82948 1.00976 1.87898 1.22034 1.28054 1.95592 1.22682 0.80648 0.94565 1.01688 1.22100 0.95206 0.95792 0.97385 0.90731 1.22138 0.90773 0.91041 0.95844 1.49067 1.07874 1.15068 1.67283 1.18339 0.90416 0.78134 0.76588 1.90542 1.40022 1.60439 1.61097 1.21345 0.92842 0.97895 1.48227 0.90017 1.26985 1.02667 0.97122 0.91732 1.70185 1.32244 1.08656 1.33979 0.85031 0.76162 0.78457 0.78815 1.18597 1.19210 1.17316 1.22267 0.89043 0.94196 0.95644 1.21425 0.93629 0.97152 0.94152 1.21795 1.01417 0.98358 0.97128 1.21931 1.00790 0.93233 1.03225 0.92463 0.92983 0.89004 0.91969 0.92739 0.90329 0.92097 0.92394 0.92354 0.91428 0.93944 0.92208 0.90092 0.91886 0.95945 0.91487 0.91623 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.42 -10.62 10.20 -148.98 -1.52 -12.14 16 4 C 0.08 1.82 4.06 71.98 0.29 2.11 16 5 C -0.09 -2.58 2.98 -9.89 -0.03 -2.61 16 6 H 0.07 2.40 7.71 -2.39 -0.02 2.39 16 7 C 0.13 4.97 6.27 86.50 0.54 5.51 16 8 N -0.66 -32.47 3.32 -812.58 -2.70 -35.17 16 9 C 0.56 34.82 7.84 86.36 0.68 35.50 16 10 O -0.63 -45.03 15.31 -4.33 -0.07 -45.09 16 11 C -0.57 -34.19 9.02 24.83 0.22 -33.97 16 12 H 0.08 4.56 6.60 -2.91 -0.02 4.54 16 13 C 0.03 1.75 5.50 85.31 0.47 2.22 16 14 N -0.82 -52.08 11.85 21.84 0.26 -51.82 16 15 Si 1.00 42.79 29.56 68.60 2.03 44.82 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 19 C 0.11 4.50 6.15 86.53 0.53 5.03 16 20 C -0.06 -1.81 1.03 -51.28 -0.05 -1.87 16 21 C -0.13 -3.74 8.23 71.98 0.59 -3.15 16 22 C -0.13 -2.62 7.28 71.98 0.52 -2.10 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 1.36 6.58 -2.39 -0.02 1.34 16 29 H 0.06 1.27 6.89 -2.38 -0.02 1.26 16 30 H 0.06 2.14 7.78 -2.39 -0.02 2.12 16 31 H 0.06 2.51 6.77 -2.39 -0.02 2.49 16 32 H 0.28 15.73 8.29 -92.71 -0.77 14.96 16 33 H 0.04 1.92 7.60 -2.39 -0.02 1.90 16 34 H 0.06 2.20 7.84 -2.38 -0.02 2.18 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.22 6.86 -2.38 -0.02 1.20 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.23 6.71 -2.39 -0.02 1.22 16 Total: -1.00 -80.93 319.78 4.00 -76.94 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.00 Total: 16.12 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.99 Total: 6.34 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.44 Total: -86.99 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -1.59 Total: -57.23 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -80.93 4.00 -76.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409429980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.469 kcal (2) G-P(sol) polarization free energy of solvation -80.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds