Wall clock time and date at job start Mon Mar 30 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00096 * 2 1 4 4 O 1.21282 * 119.99940 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00035 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.47188 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47131 * 179.97438 * 6 5 3 8 8 C 1.53006 * 109.47127 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47454 * 59.99696 * 13 11 9 15 15 H 1.48506 * 109.47297 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47261 * 299.99689 * 13 11 9 17 17 C 1.46499 * 119.99687 * 180.02562 * 2 1 3 18 18 H 1.08999 * 110.45696 * 180.69889 * 17 2 1 19 19 C 1.54511 * 110.51372 * 58.09519 * 17 2 1 20 20 C 1.54476 * 104.06437 * 241.35339 * 19 17 2 21 21 O 1.44435 * 104.80279 * 23.97720 * 20 19 17 22 22 C 1.44787 * 105.29301 * 319.45723 * 21 20 19 23 23 H 1.08996 * 109.47304 * 89.99670 * 1 2 3 24 24 H 1.08997 * 109.47323 * 209.99857 * 1 2 3 25 25 H 1.08998 * 109.46830 * 329.99599 * 1 2 3 26 26 H 1.09000 * 109.47722 * 59.99170 * 5 3 2 27 27 H 1.09001 * 109.46665 * 299.99502 * 5 3 2 28 28 H 1.08996 * 109.47452 * 59.99830 * 6 5 3 29 29 H 1.09001 * 109.46997 * 299.99404 * 6 5 3 30 30 H 1.09001 * 109.47502 * 60.00153 * 7 6 5 31 31 H 1.09001 * 109.47289 * 299.99950 * 7 6 5 32 32 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 33 33 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 34 34 H 0.96996 * 120.00505 * 179.97438 * 12 11 9 35 35 H 1.09004 * 110.51006 * 359.97438 * 19 17 2 36 36 H 1.09000 * 110.51390 * 122.70515 * 19 17 2 37 37 H 1.08997 * 110.37330 * 142.80615 * 20 19 17 38 38 H 1.09000 * 110.37461 * 265.04018 * 20 19 17 39 39 H 1.09007 * 110.41872 * 281.77488 * 22 21 20 40 40 H 1.08992 * 110.48868 * 159.32860 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3797 3.6352 0.0011 7 6 1.6147 4.9602 0.0011 8 6 2.6090 6.1231 0.0022 9 6 1.8556 7.4282 0.0028 10 1 0.7755 7.4282 0.0020 11 6 2.5450 8.6223 0.0033 12 7 3.8601 8.6223 0.0038 13 14 1.6110 10.2400 0.0033 14 1 0.7567 10.3184 1.2155 15 1 2.5760 11.3688 0.0046 16 1 0.7577 10.3190 -1.2095 17 6 2.1975 -1.2688 -0.0006 18 1 3.2723 -1.0882 0.0120 19 6 1.8058 -2.1195 -1.2295 20 6 1.1954 -3.4009 -0.6198 21 8 0.7436 -3.0056 0.6939 22 6 1.7801 -2.1352 1.2083 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 0.7590 2.5299 0.8907 27 1 0.7586 2.5302 -0.8892 28 1 3.0064 3.5779 -0.8888 29 1 3.0063 3.5771 0.8911 30 1 0.9878 5.0179 0.8908 31 1 0.9884 5.0181 -0.8891 32 1 3.2350 6.0651 0.8927 33 1 3.2363 6.0657 -0.8873 34 1 4.3451 9.4622 0.0038 35 1 1.0668 -1.5963 -1.8364 36 1 2.6873 -2.3615 -1.8232 37 1 0.3548 -3.7447 -1.2225 38 1 1.9515 -4.1823 -0.5435 39 1 2.6268 -2.7217 1.5651 40 1 1.3885 -1.5070 2.0082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588648400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:29 Heat of formation + Delta-G solvation = -100.859048 kcal Electronic energy + Delta-G solvation = -18808.066954 eV Core-core repulsion = 15815.215838 eV Total energy + Delta-G solvation = -2992.851116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -40.58555 -38.93068 -35.44624 -34.89015 -32.68506 -31.66451 -29.88529 -28.97020 -26.89851 -25.62779 -23.37574 -22.55250 -21.06478 -20.00090 -19.08826 -17.38259 -16.92189 -16.23643 -16.07077 -15.81605 -15.76127 -14.98070 -14.45876 -14.33905 -13.56550 -13.27379 -12.89690 -12.75378 -12.45849 -12.41624 -12.18090 -11.94993 -11.76889 -11.62726 -11.53832 -11.34179 -10.95856 -10.52597 -10.51145 -10.38844 -10.29763 -9.75541 -9.59591 -9.20758 -8.97801 -8.80205 -8.29157 -5.94005 -3.96637 2.64417 2.80646 3.36078 3.40392 3.42667 3.56452 4.24125 4.41250 4.49776 4.63758 4.69457 4.73769 4.87233 5.04698 5.22060 5.27522 5.28661 5.32557 5.35279 5.39369 5.41448 5.56038 5.57783 5.64597 5.87238 6.14955 6.25809 6.31246 6.41594 6.56496 6.85218 7.02387 7.19989 7.27070 7.75086 7.91498 8.07384 8.17629 8.49158 9.10931 9.66904 11.17343 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.062409 B = 0.003032 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.545506 B = 9232.325848 C = 9435.942179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.616 5.616 3 C 0.514 3.486 4 O -0.535 6.535 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.020 3.980 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.106 3.894 18 H 0.115 0.885 19 C -0.167 4.167 20 C 0.045 3.955 21 O -0.375 6.375 22 C 0.035 3.965 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -24.297 -0.744 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.351 5.351 3 C 0.304 3.696 4 O -0.411 6.411 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.017 4.017 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.002 3.998 18 H 0.133 0.867 19 C -0.205 4.205 20 C -0.032 4.032 21 O -0.293 6.293 22 C -0.043 4.043 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.778 -24.223 -0.634 25.161 hybrid contribution -0.352 0.951 -0.179 1.030 sum -7.130 -23.272 -0.813 24.353 Atomic orbital electron populations 1.21842 0.79186 1.03875 1.02025 1.47977 1.07102 1.05190 1.74791 1.21202 0.88250 0.85504 0.74687 1.90688 1.14214 1.87284 1.48939 1.21823 1.00071 0.91832 1.03864 1.21467 0.97039 0.92752 1.02925 1.21648 0.99074 0.93987 1.00052 1.19089 0.94050 0.91248 0.97293 1.21253 0.92950 0.91227 1.50511 0.92805 1.25039 0.94839 0.99216 0.95456 1.69961 1.06055 1.26625 1.50869 0.86671 0.79575 0.83255 0.78548 1.20284 1.21318 1.20285 1.22395 0.99085 0.84060 0.94282 0.86718 1.23336 1.02366 0.96464 0.98357 1.23415 0.99533 0.95978 0.84241 1.89196 1.42876 1.66381 1.30892 1.23892 0.91707 0.91982 0.96693 0.92740 0.90145 0.90544 0.89081 0.89142 0.91845 0.91815 0.93483 0.93491 0.96602 0.96612 0.92984 0.89844 0.89694 0.88934 0.92046 0.91033 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.31 59.85 0.56 1.15 16 2 N -0.62 -6.71 2.76 -172.15 -0.48 -7.18 16 3 C 0.51 7.35 7.67 -10.99 -0.08 7.27 16 4 O -0.54 -9.74 15.34 5.56 0.09 -9.66 16 5 C -0.14 -1.86 4.25 -27.89 -0.12 -1.98 16 6 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 7 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 8 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 10 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.11 1.03 3.52 -66.36 -0.23 0.80 16 18 H 0.11 1.30 6.98 -51.93 -0.36 0.94 16 19 C -0.17 -1.26 6.57 -25.16 -0.17 -1.43 16 20 C 0.05 0.31 7.63 37.93 0.29 0.60 16 21 O -0.37 -3.41 10.64 -35.23 -0.37 -3.78 16 22 C 0.03 0.30 6.56 37.93 0.25 0.55 16 23 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 24 H 0.08 0.62 6.35 -51.93 -0.33 0.29 16 25 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 26 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 27 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 28 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.08 0.65 7.27 -51.93 -0.38 0.28 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -33.79 323.50 -7.29 -41.09 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.80 Total: -4.39 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.31 Total: -10.97 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.26 Total: -34.14 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.29 Total: -13.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.79 -7.29 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588648400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.774 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds