Wall clock time and date at job start Mon Mar 30 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46913 * 2 1 4 4 C 1.34774 * 120.00244 * 90.00439 * 3 2 1 5 5 O 1.21279 * 119.99935 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99948 * 359.97438 * 4 3 2 7 7 C 1.53002 * 109.47324 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46997 * 180.02562 * 7 6 4 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.46499 * 119.99794 * 269.99748 * 3 2 1 17 17 H 1.08997 * 109.52517 * 359.87580 * 16 3 2 18 18 C 1.53179 * 109.52124 * 239.68954 * 16 3 2 19 19 C 1.53180 * 109.03481 * 183.11653 * 18 16 3 20 20 C 1.53094 * 109.16543 * 56.97780 * 19 18 16 21 21 O 1.42903 * 109.41228 * 302.39226 * 20 19 18 22 22 C 1.42901 * 114.09788 * 61.15740 * 21 20 19 23 23 H 1.09005 * 109.47055 * 300.00138 * 1 2 3 24 24 H 1.09001 * 109.46783 * 60.00151 * 1 2 3 25 25 H 1.08998 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47306 * 239.99842 * 2 1 3 27 27 H 1.09001 * 109.46783 * 119.99848 * 2 1 3 28 28 H 1.09005 * 109.46911 * 60.00626 * 6 4 3 29 29 H 1.09002 * 109.47591 * 300.00586 * 6 4 3 30 30 H 1.09005 * 109.46767 * 60.00353 * 7 6 4 31 31 H 1.09002 * 109.47113 * 300.00693 * 7 6 4 32 32 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.54683 * 302.97718 * 18 16 3 34 34 H 1.08994 * 109.54581 * 63.24955 * 18 16 3 35 35 H 1.09007 * 109.52257 * 297.07132 * 19 18 16 36 36 H 1.08999 * 109.52386 * 176.88804 * 19 18 16 37 37 H 1.09000 * 109.47886 * 182.40969 * 20 19 18 38 38 H 1.08996 * 109.48687 * 62.37923 * 20 19 18 39 39 H 1.08996 * 109.48090 * 178.85403 * 22 21 20 40 40 H 1.09003 * 109.49003 * 58.82852 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6468 3.1602 1.1671 6 6 1.9914 1.3064 2.4723 7 6 2.3224 2.2440 3.6352 8 6 2.0714 1.5335 4.9403 9 1 1.7122 0.5150 4.9403 10 6 2.3004 2.1838 6.1344 11 7 2.0818 1.5636 7.2733 12 14 2.9210 3.9457 6.1342 13 1 4.4060 3.9474 6.1344 14 1 2.4253 4.6451 4.9217 15 1 2.4250 4.6452 7.3467 16 6 2.2625 2.0718 -1.2687 17 1 2.0288 1.4040 -2.0978 18 6 3.7332 2.4926 -1.3477 19 6 3.9585 3.2809 -2.6416 20 6 3.0084 4.4810 -2.6710 21 8 1.6596 4.0216 -2.5629 22 6 1.3779 3.3185 -1.3511 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.6214 0.4187 2.5302 29 1 0.9434 1.0125 2.5299 30 1 1.6921 3.1314 3.5771 31 1 3.3704 2.5382 3.5777 32 1 2.2433 2.0210 8.1134 33 1 3.9795 3.1200 -0.4911 34 1 4.3668 1.6058 -1.3460 35 1 3.7599 2.6379 -3.4992 36 1 4.9898 3.6317 -2.6795 37 1 3.1344 5.0214 -3.6091 38 1 3.2345 5.1443 -1.8361 39 1 0.3293 3.0217 -1.3384 40 1 1.5826 3.9664 -0.4988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593297041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:01 Heat of formation + Delta-G solvation = -96.368465 kcal Electronic energy + Delta-G solvation = -19968.475737 eV Core-core repulsion = 16975.819348 eV Total energy + Delta-G solvation = -2992.656389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42238 -38.46943 -35.83008 -33.79938 -33.17064 -31.60924 -30.89239 -29.17480 -26.18997 -25.08596 -23.47392 -23.30063 -21.17220 -20.32991 -18.52014 -17.15938 -16.63044 -16.24065 -15.95284 -15.62119 -14.94767 -14.66475 -14.10975 -13.99222 -13.79670 -13.49444 -13.15275 -12.90394 -12.67343 -12.60480 -12.30817 -12.00154 -11.75271 -11.38844 -11.32334 -11.09706 -10.96677 -10.79054 -10.50889 -10.15169 -10.01728 -9.80307 -9.68575 -9.19655 -9.01552 -8.52705 -8.46411 -6.04052 -4.02676 3.01621 3.06028 3.36559 3.43368 3.53924 3.91272 4.49779 4.60774 4.77668 4.82846 4.85766 4.95286 5.10434 5.24036 5.26680 5.31506 5.33298 5.41350 5.54216 5.65838 5.70559 5.77039 5.80026 5.84839 5.89790 6.02290 6.04912 6.09845 6.16113 6.27699 6.66737 6.69683 7.15514 7.34951 7.42073 7.60316 7.78556 8.47910 8.59851 8.98991 9.59136 11.08820 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.005650 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.872624 B = 4954.299173 C = 5660.149601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 N -0.619 5.619 4 C 0.514 3.486 5 O -0.535 6.535 6 C -0.122 4.122 7 C 0.002 3.998 8 C -0.524 4.524 9 H 0.072 0.928 10 C 0.070 3.930 11 N -0.903 5.903 12 Si 0.877 3.123 13 H -0.277 1.277 14 H -0.261 1.261 15 H -0.288 1.288 16 C 0.122 3.878 17 H 0.086 0.914 18 C -0.142 4.142 19 C -0.149 4.149 20 C 0.058 3.942 21 O -0.383 6.383 22 C 0.044 3.956 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.263 0.737 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -1.136 -20.697 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.355 5.355 4 C 0.304 3.696 5 O -0.412 6.412 6 C -0.161 4.161 7 C -0.036 4.036 8 C -0.562 4.562 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.542 5.542 12 Si 0.704 3.296 13 H -0.203 1.203 14 H -0.186 1.186 15 H -0.214 1.214 16 C 0.018 3.982 17 H 0.104 0.896 18 C -0.180 4.180 19 C -0.187 4.187 20 C -0.019 4.019 21 O -0.301 6.301 22 C -0.033 4.033 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.327 -0.460 -20.641 20.649 hybrid contribution 0.517 0.602 0.305 0.850 sum 0.844 0.142 -20.336 20.354 Atomic orbital electron populations 1.22246 0.95929 1.02325 1.02699 1.21584 0.94522 0.82225 1.03315 1.48216 1.67505 1.14358 1.05374 1.21544 0.75610 0.86792 0.85610 1.90580 1.45028 1.18238 1.87307 1.21730 1.02877 1.00492 0.91025 1.19372 0.97100 0.94912 0.92214 1.21105 1.45103 1.01151 0.88858 0.90968 1.24966 0.94803 0.97953 0.95457 1.69912 1.49393 1.37500 0.97427 0.86807 0.79479 0.85519 0.77808 1.20290 1.18551 1.21439 1.21563 0.95661 0.94679 0.86273 0.89553 1.22058 0.95732 1.01123 0.99135 1.22152 1.00257 0.98108 0.98186 1.22590 0.82031 0.95320 1.01935 1.87891 1.28277 1.73920 1.40023 1.23051 0.98893 0.93274 0.88094 0.91728 0.92648 0.91490 0.90835 0.89520 0.89732 0.89597 0.95877 0.96361 0.92722 0.89055 0.91696 0.91401 0.90765 0.89093 0.92794 0.89273 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.11 1.12 5.90 -4.04 -0.02 1.10 16 3 N -0.62 -8.45 2.43 -165.95 -0.40 -8.85 16 4 C 0.51 9.16 7.09 -10.99 -0.08 9.08 16 5 O -0.54 -11.18 12.14 5.56 0.07 -11.11 16 6 C -0.12 -2.33 4.19 -27.88 -0.12 -2.45 16 7 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 8 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 9 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 12 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 C 0.12 1.55 2.75 -67.79 -0.19 1.36 16 17 H 0.09 0.94 7.80 -51.93 -0.40 0.54 16 18 C -0.14 -1.81 5.27 -26.55 -0.14 -1.95 16 19 C -0.15 -1.54 6.14 -26.59 -0.16 -1.70 16 20 C 0.06 0.65 6.84 37.21 0.25 0.91 16 21 O -0.38 -5.19 10.77 -35.23 -0.38 -5.57 16 22 C 0.04 0.62 6.09 37.20 0.23 0.84 16 23 H 0.06 0.74 7.22 -51.93 -0.37 0.37 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.62 7.92 -51.93 -0.41 0.21 16 27 H 0.09 0.92 6.44 -51.93 -0.33 0.59 16 28 H 0.08 1.51 7.40 -51.93 -0.38 1.13 16 29 H 0.09 1.54 7.19 -51.93 -0.37 1.17 16 30 H 0.02 0.60 7.15 -51.93 -0.37 0.22 16 31 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.09 1.45 6.08 -51.93 -0.32 1.13 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.30 6.11 -51.93 -0.32 0.98 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -32.62 312.76 -6.91 -39.53 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.65 Total: -1.99 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.37 Total: -7.45 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.37 Total: -36.00 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.31 Total: -16.69 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.62 -6.91 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593297041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.836 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds