Wall clock time and date at job start Mon Mar 30 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46913 * 2 1 4 4 C 1.34774 * 120.00244 * 90.00439 * 3 2 1 5 5 O 1.21279 * 119.99935 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99948 * 359.97438 * 4 3 2 7 7 C 1.53002 * 109.47324 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46997 * 180.02562 * 7 6 4 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.46499 * 119.99794 * 269.99748 * 3 2 1 17 17 H 1.08997 * 109.52517 * 359.87580 * 16 3 2 18 18 C 1.53179 * 109.52124 * 239.68954 * 16 3 2 19 19 C 1.53180 * 109.03481 * 183.11653 * 18 16 3 20 20 C 1.53094 * 109.16543 * 56.97780 * 19 18 16 21 21 O 1.42903 * 109.41228 * 302.39226 * 20 19 18 22 22 C 1.42901 * 114.09788 * 61.15740 * 21 20 19 23 23 H 1.09005 * 109.47055 * 300.00138 * 1 2 3 24 24 H 1.09001 * 109.46783 * 60.00151 * 1 2 3 25 25 H 1.08998 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47306 * 239.99842 * 2 1 3 27 27 H 1.09001 * 109.46783 * 119.99848 * 2 1 3 28 28 H 1.09005 * 109.46911 * 60.00626 * 6 4 3 29 29 H 1.09002 * 109.47591 * 300.00586 * 6 4 3 30 30 H 1.09005 * 109.46767 * 60.00353 * 7 6 4 31 31 H 1.09002 * 109.47113 * 300.00693 * 7 6 4 32 32 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.54683 * 302.97718 * 18 16 3 34 34 H 1.08994 * 109.54581 * 63.24955 * 18 16 3 35 35 H 1.09007 * 109.52257 * 297.07132 * 19 18 16 36 36 H 1.08999 * 109.52386 * 176.88804 * 19 18 16 37 37 H 1.09000 * 109.47886 * 182.40969 * 20 19 18 38 38 H 1.08996 * 109.48687 * 62.37923 * 20 19 18 39 39 H 1.08996 * 109.48090 * 178.85403 * 22 21 20 40 40 H 1.09003 * 109.49003 * 58.82852 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6468 3.1602 1.1671 6 6 1.9914 1.3064 2.4723 7 6 2.3224 2.2440 3.6352 8 6 2.0714 1.5335 4.9403 9 1 1.7122 0.5150 4.9403 10 6 2.3004 2.1838 6.1344 11 7 2.0818 1.5636 7.2733 12 14 2.9210 3.9457 6.1342 13 1 4.4060 3.9474 6.1344 14 1 2.4253 4.6451 4.9217 15 1 2.4250 4.6452 7.3467 16 6 2.2625 2.0718 -1.2687 17 1 2.0288 1.4040 -2.0978 18 6 3.7332 2.4926 -1.3477 19 6 3.9585 3.2809 -2.6416 20 6 3.0084 4.4810 -2.6710 21 8 1.6596 4.0216 -2.5629 22 6 1.3779 3.3185 -1.3511 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.6214 0.4187 2.5302 29 1 0.9434 1.0125 2.5299 30 1 1.6921 3.1314 3.5771 31 1 3.3704 2.5382 3.5777 32 1 2.2433 2.0210 8.1134 33 1 3.9795 3.1200 -0.4911 34 1 4.3668 1.6058 -1.3460 35 1 3.7599 2.6379 -3.4992 36 1 4.9898 3.6317 -2.6795 37 1 3.1344 5.0214 -3.6091 38 1 3.2345 5.1443 -1.8361 39 1 0.3293 3.0217 -1.3384 40 1 1.5826 3.9664 -0.4988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593297041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:00 Heat of formation + Delta-G solvation = -117.634257 kcal Electronic energy + Delta-G solvation = -19969.397891 eV Core-core repulsion = 16975.819348 eV Total energy + Delta-G solvation = -2993.578543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60780 -39.60919 -37.01831 -35.63900 -34.39365 -33.27873 -32.08516 -30.30105 -27.98464 -26.08482 -24.76459 -24.22924 -22.73985 -21.52881 -19.92873 -18.96877 -17.85599 -17.46530 -17.16647 -16.68748 -16.32729 -16.14297 -15.69740 -15.10162 -14.93696 -14.73441 -14.66335 -14.33406 -13.99601 -13.71606 -13.47373 -13.39479 -12.98182 -12.82920 -12.64022 -12.24821 -12.09594 -12.01132 -11.91482 -11.84036 -11.64720 -11.50699 -11.37213 -10.79606 -10.76090 -10.38727 -9.59573 -8.32756 -6.35265 1.30808 1.33140 1.47870 1.64505 1.93847 2.33244 2.92993 3.03044 3.54335 3.81895 3.91001 3.94364 4.01708 4.13520 4.23569 4.34317 4.35712 4.41326 4.48359 4.62331 4.62736 4.73645 4.80260 4.85561 4.88062 4.96838 5.01300 5.06828 5.08760 5.26412 5.32394 5.41088 5.43388 5.59497 5.66276 6.15017 6.22465 6.40383 6.70922 7.24367 7.30059 8.82979 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.005650 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.872624 B = 4954.299173 C = 5660.149601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.514 3.486 5 O -0.573 6.573 6 C -0.115 4.115 7 C 0.007 3.993 8 C -0.527 4.527 9 H 0.050 0.950 10 C 0.016 3.984 11 N -0.943 5.943 12 Si 0.936 3.064 13 H -0.269 1.269 14 H -0.263 1.263 15 H -0.278 1.278 16 C 0.123 3.877 17 H 0.118 0.882 18 C -0.142 4.142 19 C -0.141 4.141 20 C 0.051 3.949 21 O -0.391 6.391 22 C 0.048 3.952 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.267 0.733 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -1.699 -23.242 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.340 5.340 4 C 0.304 3.696 5 O -0.452 6.452 6 C -0.154 4.154 7 C -0.031 4.031 8 C -0.565 4.565 9 H 0.069 0.931 10 C -0.182 4.182 11 N -0.583 5.583 12 Si 0.761 3.239 13 H -0.194 1.194 14 H -0.187 1.187 15 H -0.203 1.203 16 C 0.019 3.981 17 H 0.136 0.864 18 C -0.181 4.181 19 C -0.179 4.179 20 C -0.025 4.025 21 O -0.309 6.309 22 C -0.029 4.029 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.617 -1.058 -23.218 23.250 hybrid contribution 0.391 0.709 1.055 1.330 sum 1.008 -0.349 -22.163 22.189 Atomic orbital electron populations 1.22212 0.95227 1.03506 1.01883 1.21902 0.95072 0.80355 1.04968 1.48170 1.65951 1.15364 1.04515 1.21169 0.75802 0.86235 0.86363 1.90584 1.46993 1.19736 1.87920 1.21537 1.03866 0.99746 0.90281 1.19206 0.95991 0.95123 0.92751 1.21413 1.44088 1.00469 0.90564 0.93146 1.25767 0.95260 1.01909 0.95259 1.70020 1.50878 1.39292 0.98137 0.85866 0.79289 0.80862 0.77911 1.19393 1.18748 1.20317 1.21708 0.95473 0.94638 0.86233 0.86369 1.22023 0.95828 1.01184 0.99023 1.22118 1.00740 0.97553 0.97446 1.22797 0.81335 0.95840 1.02562 1.87877 1.29668 1.74006 1.39374 1.22922 0.99609 0.93264 0.87147 0.93974 0.92022 0.89330 0.87484 0.89641 0.88302 0.88490 0.97414 0.97430 0.92373 0.92729 0.90676 0.89353 0.89377 0.86404 0.94653 0.88611 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.24 71.98 0.74 -2.15 16 2 C 0.10 1.78 5.90 86.38 0.51 2.29 16 3 N -0.61 -15.48 2.43 -797.35 -1.94 -17.42 16 4 C 0.51 18.20 7.09 87.66 0.62 18.82 16 5 O -0.57 -24.47 12.14 -3.03 -0.04 -24.51 16 6 C -0.11 -4.39 4.19 29.85 0.13 -4.26 16 7 C 0.01 0.36 3.33 29.85 0.10 0.46 16 8 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 9 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 10 C 0.02 0.94 5.47 84.66 0.46 1.41 16 11 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 12 Si 0.94 47.06 27.47 68.60 1.88 48.95 16 13 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.26 -13.21 6.54 99.48 0.65 -12.56 16 15 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 16 C 0.12 2.84 2.75 45.08 0.12 2.96 16 17 H 0.12 2.06 7.80 -2.39 -0.02 2.04 16 18 C -0.14 -3.37 5.27 30.71 0.16 -3.21 16 19 C -0.14 -2.53 6.14 30.69 0.19 -2.35 16 20 C 0.05 1.07 6.84 72.01 0.49 1.56 16 21 O -0.39 -9.99 10.77 -148.98 -1.60 -11.60 16 22 C 0.05 1.30 6.09 72.01 0.44 1.74 16 23 H 0.04 0.91 7.22 -2.38 -0.02 0.89 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 1.29 7.92 -2.39 -0.02 1.27 16 27 H 0.09 1.60 6.44 -2.39 -0.02 1.58 16 28 H 0.10 3.46 7.40 -2.38 -0.02 3.44 16 29 H 0.10 3.46 7.19 -2.39 -0.02 3.44 16 30 H 0.01 0.40 7.15 -2.38 -0.02 0.38 16 31 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 32 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.05 1.73 6.08 -2.39 -0.01 1.72 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.04 1.45 6.11 -2.39 -0.01 1.43 16 Total: -1.00 -71.96 312.76 3.76 -68.20 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.95 Total: 8.15 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.21 Total: -12.98 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -1.64 Total: -76.21 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.64 Total: -36.11 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.88 Total: 48.95 kcal Total: -71.96 3.76 -68.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593297041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.435 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds