Wall clock time and date at job start Mon Mar 30 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46959 * 2 1 4 4 C 1.42901 * 113.99673 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.85523 * 18.79875 * 4 3 2 6 6 C 1.53788 * 113.61417 * 150.00093 * 4 3 2 7 7 C 1.53781 * 87.08063 * 140.05874 * 6 4 3 8 8 H 1.09002 * 113.61382 * 89.19888 * 7 6 4 9 9 N 1.46498 * 113.61158 * 220.01520 * 7 6 4 10 10 C 1.34777 * 119.99828 * 204.72374 * 9 7 6 11 11 O 1.21283 * 120.00222 * 0.28168 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27728 * 10 9 7 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47353 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47846 * 180.02562 * 14 13 12 16 16 H 1.08010 * 119.99192 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00564 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47041 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47126 * 120.00329 * 19 17 15 22 22 H 1.48504 * 109.47040 * 240.00254 * 19 17 15 23 23 C 1.53782 * 87.08215 * 334.56694 * 7 6 4 24 24 H 1.09000 * 109.47022 * 59.99832 * 1 2 3 25 25 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46694 * 299.99780 * 1 2 3 27 27 H 1.09002 * 109.46694 * 240.00220 * 2 1 3 28 28 H 1.09002 * 109.47309 * 119.99717 * 2 1 3 29 29 H 1.09001 * 113.61464 * 25.51073 * 6 4 3 30 30 H 1.09001 * 113.61074 * 254.61108 * 6 4 3 31 31 H 0.97001 * 120.00384 * 25.00821 * 9 7 6 32 32 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 33 33 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 34 34 H 1.08998 * 109.47508 * 300.00200 * 13 12 10 35 35 H 1.09011 * 109.47182 * 60.00188 * 13 12 10 36 36 H 1.08999 * 109.47616 * 300.00389 * 14 13 12 37 37 H 1.09003 * 109.47280 * 60.00024 * 14 13 12 38 38 H 0.97000 * 119.99614 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.61513 * 139.98092 * 23 7 6 40 40 H 1.08999 * 113.61337 * 270.88082 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9278 0.5458 -0.3246 6 6 3.9484 2.7254 -0.7051 7 6 4.9914 2.8301 0.4200 8 1 5.9155 2.2914 0.2104 9 7 5.2241 4.2019 0.8786 10 6 6.3959 4.5290 1.4584 11 8 7.2598 3.6888 1.5961 12 6 6.6330 5.9386 1.9358 13 6 8.0306 6.0409 2.5496 14 6 8.2716 7.4721 3.0336 15 6 9.6485 7.5732 3.6377 16 1 10.2881 6.7035 3.6724 17 6 10.0919 8.7757 4.1459 18 7 9.3129 9.8345 4.1041 19 14 11.7990 8.9010 4.8940 20 1 12.4704 7.5786 4.8195 21 1 12.5963 9.9036 4.1427 22 1 11.6875 9.3207 6.3142 23 6 4.0048 2.0452 1.3006 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2304 3.5455 -0.7128 30 1 4.3823 2.5322 -1.6862 31 1 4.5332 4.8739 0.7686 32 1 6.5555 6.6254 1.0930 33 1 5.8863 6.1985 2.6861 34 1 8.1086 5.3540 3.3923 35 1 8.7771 5.7812 1.7988 36 1 8.1938 8.1588 2.1907 37 1 7.5252 7.7324 3.7842 38 1 9.6247 10.6804 4.4620 39 1 4.4843 1.3030 1.9389 40 1 3.3023 2.6794 1.8414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594044113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:30 Heat of formation + Delta-G solvation = -89.312038 kcal Electronic energy + Delta-G solvation = -18170.355897 eV Core-core repulsion = 15178.005497 eV Total energy + Delta-G solvation = -2992.350400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23830 -38.82404 -36.72881 -34.14607 -33.17894 -31.95022 -31.13892 -27.93336 -26.01672 -24.78933 -23.38962 -22.99721 -20.63855 -20.28950 -19.57171 -17.52684 -16.81433 -16.07826 -16.01828 -15.82148 -15.36554 -15.09209 -14.39251 -14.05269 -13.67717 -13.36256 -13.05807 -12.88223 -12.72430 -12.25503 -12.06208 -11.87070 -11.77602 -11.38460 -11.28017 -11.21994 -11.05231 -10.80124 -10.56857 -10.49730 -9.75064 -9.65006 -9.64803 -9.23488 -8.97567 -8.95492 -8.30338 -5.95775 -3.96964 2.92148 3.12066 3.35017 3.42174 3.48027 3.60561 4.23589 4.28152 4.51140 4.54800 4.60837 4.71512 4.84309 4.99203 5.05974 5.18464 5.35765 5.40318 5.46416 5.47982 5.52159 5.69394 5.70504 5.74809 5.75848 5.77201 5.95462 6.30615 6.55130 6.75990 6.93770 6.96550 7.19368 7.64063 7.73964 7.86540 8.05300 8.47859 8.49926 9.10435 9.66917 11.15780 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.068958 B = 0.002650 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.948383 B =10562.434788 C =10671.044954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.065 3.935 5 H 0.090 0.910 6 C -0.143 4.143 7 C 0.125 3.875 8 H 0.116 0.884 9 N -0.727 5.727 10 C 0.514 3.486 11 O -0.539 6.539 12 C -0.139 4.139 13 C -0.095 4.095 14 C 0.019 3.981 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.168 4.168 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.401 0.599 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.521 -17.358 -10.253 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.293 6.293 4 C 0.006 3.994 5 H 0.108 0.892 6 C -0.181 4.181 7 C 0.019 3.981 8 H 0.134 0.866 9 N -0.380 5.380 10 C 0.302 3.698 11 O -0.415 6.415 12 C -0.179 4.179 13 C -0.133 4.133 14 C -0.018 4.018 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.208 4.208 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.996 -17.623 -10.102 26.485 hybrid contribution 0.640 0.264 0.392 0.795 sum -16.356 -17.359 -9.710 25.752 Atomic orbital electron populations 1.21753 0.93796 1.02227 1.03161 1.22519 0.95605 0.83999 1.00040 1.87950 1.20443 1.26280 1.94606 1.23442 0.81179 0.97779 0.96959 0.89240 1.23618 0.97765 0.98259 0.98505 1.22080 0.97563 0.84125 0.94293 0.86640 1.46048 1.18094 1.11087 1.62749 1.21316 0.80807 0.91574 0.76088 1.90665 1.43849 1.51772 1.55202 1.21852 1.02387 0.91614 1.02056 1.21440 0.91625 1.00690 0.99541 1.19143 0.96765 0.89716 0.96147 1.21317 1.00399 0.95504 1.38241 0.92528 1.25030 0.97473 0.95911 0.96215 1.69976 1.36355 1.00586 1.46835 0.86535 0.84586 0.78066 0.78834 1.19692 1.21064 1.21055 1.24019 0.98772 1.00382 0.97593 0.91869 0.91164 0.91811 0.93394 0.93326 0.88594 0.90272 0.76457 0.89329 0.89343 0.92729 0.92723 0.96595 0.96597 0.93147 0.90819 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.39 6.50 37.16 0.24 0.63 16 3 O -0.37 -3.55 10.36 -35.23 -0.36 -3.92 16 4 C 0.06 0.55 4.31 -25.91 -0.11 0.44 16 5 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 6 C -0.14 -1.20 7.66 -25.92 -0.20 -1.40 16 7 C 0.13 1.34 4.24 -67.12 -0.28 1.05 16 8 H 0.12 1.39 7.47 -51.93 -0.39 1.01 16 9 N -0.73 -8.65 5.35 -53.02 -0.28 -8.94 16 10 C 0.51 8.32 7.83 -10.98 -0.09 8.23 16 11 O -0.54 -10.84 15.58 5.55 0.09 -10.76 16 12 C -0.14 -2.33 5.70 -27.89 -0.16 -2.48 16 13 C -0.09 -2.08 4.44 -26.74 -0.12 -2.20 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 19 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.17 -1.65 7.71 -25.92 -0.20 -1.85 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 3.70 8.73 -40.82 -0.36 3.35 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 1.24 8.10 -51.92 -0.42 0.82 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -33.78 335.79 -7.90 -41.68 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.03 Total: -2.09 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.08 Total: -11.65 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.45 Total: -35.51 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.28 Total: -14.67 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.78 -7.90 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594044113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.631 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds