Wall clock time and date at job start Mon Mar 30 2020 04:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 113.99860 * 2 1 4 4 C 1.53007 * 109.47061 * 180.02562 * 3 2 1 5 5 C 1.52993 * 115.55032 * 65.13852 * 4 3 2 6 6 N 1.46499 * 109.47238 * 65.20371 * 5 4 3 7 7 C 1.34781 * 119.99880 * 185.01774 * 6 5 4 8 8 O 1.21284 * 120.00178 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99757 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47151 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47497 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47552 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99556 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99978 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99635 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47068 * 89.99985 * 16 14 12 18 18 H 1.48501 * 109.46741 * 210.00105 * 16 14 12 19 19 H 1.48503 * 109.46963 * 329.99885 * 16 14 12 20 20 C 1.53001 * 117.49642 * 279.46899 * 4 3 2 21 21 C 1.53001 * 117.49600 * 210.80961 * 4 3 2 22 22 H 1.08999 * 109.47720 * 59.99536 * 1 2 3 23 23 H 1.09009 * 109.47182 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46874 * 299.99495 * 1 2 3 25 25 H 1.09004 * 109.47263 * 300.00114 * 3 2 1 26 26 H 1.09003 * 109.47412 * 60.00518 * 3 2 1 27 27 H 1.09005 * 109.47265 * 185.20036 * 5 4 3 28 28 H 1.08998 * 109.47294 * 305.19972 * 5 4 3 29 29 H 0.96996 * 119.99889 * 4.99995 * 6 5 4 30 30 H 1.09005 * 109.46933 * 299.99096 * 9 7 6 31 31 H 1.08994 * 109.47533 * 59.99039 * 9 7 6 32 32 H 1.09005 * 109.46802 * 299.99590 * 10 9 7 33 33 H 1.08994 * 109.47349 * 59.99339 * 10 9 7 34 34 H 1.08997 * 109.47166 * 300.00364 * 11 10 9 35 35 H 1.09008 * 109.47012 * 59.99535 * 11 10 9 36 36 H 0.97002 * 120.00337 * 179.97438 * 15 14 12 37 37 H 1.09004 * 117.49994 * 359.97438 * 20 4 3 38 38 H 1.08997 * 117.50046 * 145.01749 * 20 4 3 39 39 H 1.09001 * 117.50116 * 214.97152 * 21 4 3 40 40 H 1.08996 * 117.50276 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1469 0.5542 -1.2534 6 7 3.9023 1.4238 -2.4068 7 6 4.2636 1.0227 -3.6417 8 8 4.7916 -0.0579 -3.7982 9 6 4.0115 1.9170 -4.8282 10 6 4.5126 1.2301 -6.1002 11 6 4.2560 2.1377 -7.3049 12 6 4.7501 1.4614 -8.5577 13 1 5.2016 0.4820 -8.5004 14 6 4.6249 2.0926 -9.7771 15 7 4.0747 3.2850 -9.8468 16 14 5.2368 1.2539 -11.3301 17 1 4.1418 0.4413 -11.9180 18 1 5.6711 2.2821 -12.3096 19 1 6.3840 0.3717 -10.9970 20 6 4.2225 0.9060 1.3377 21 6 4.3319 2.2907 0.6944 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6885 1.8463 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 5.2208 0.4323 -1.1116 28 1 3.6908 -0.4199 -1.4296 29 1 3.4801 2.2880 -2.2816 30 1 2.9424 2.1106 -4.9165 31 1 4.5414 2.8597 -4.6918 32 1 5.5817 1.0368 -6.0116 33 1 3.9830 0.2873 -6.2367 34 1 3.1869 2.3307 -7.3933 35 1 4.7854 3.0808 -7.1686 36 1 3.9869 3.7293 -10.7046 37 1 3.5880 0.8092 2.2187 38 1 5.1104 0.2739 1.3257 39 1 5.2918 2.5690 0.2594 40 1 3.7694 3.1042 1.1524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594108751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:27 Heat of formation + Delta-G solvation = -81.477859 kcal Electronic energy + Delta-G solvation = -18506.044057 eV Core-core repulsion = 15514.033373 eV Total energy + Delta-G solvation = -2992.010684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82182 -38.71298 -37.03753 -34.22211 -33.90141 -31.97860 -28.83897 -28.18824 -26.47030 -25.71538 -23.56910 -22.74818 -20.53236 -19.98936 -19.43835 -17.08144 -16.60921 -16.21982 -16.15830 -15.93754 -15.39557 -15.18840 -14.60120 -14.37842 -14.00246 -13.49054 -13.25834 -12.74873 -12.54848 -12.22788 -11.95723 -11.83118 -11.79054 -11.39018 -11.25590 -10.77719 -10.70069 -10.56315 -10.50485 -10.43797 -9.93922 -9.63175 -9.60267 -9.21417 -8.97101 -8.90829 -8.29152 -5.94918 -3.96068 2.96226 3.01860 3.36987 3.42481 3.45229 3.48337 3.78391 4.31314 4.38908 4.51980 4.55185 4.67689 4.94379 5.05812 5.12742 5.19937 5.28541 5.30313 5.40370 5.41167 5.52940 5.55824 5.71258 5.77121 5.77535 5.80064 5.89712 6.31612 6.55700 6.78037 6.84823 6.98527 7.21136 7.68870 7.75054 7.87696 8.06192 8.50334 8.54817 9.11136 9.67745 11.16641 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034864 B = 0.003217 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.937839 B = 8701.826593 C = 8965.683466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.100 3.900 4 C -0.144 4.144 5 C 0.161 3.839 6 N -0.737 5.737 7 C 0.512 3.488 8 O -0.539 6.539 9 C -0.138 4.138 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.154 4.154 21 C -0.163 4.163 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.397 0.603 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -0.323 24.494 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.023 3.977 4 C -0.145 4.145 5 C 0.037 3.963 6 N -0.390 5.390 7 C 0.300 3.700 8 O -0.415 6.415 9 C -0.178 4.178 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.192 4.192 21 C -0.200 4.200 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.231 0.769 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.843 -1.160 24.243 24.749 hybrid contribution -0.224 0.343 -0.771 0.873 sum -5.067 -0.817 23.472 24.027 Atomic orbital electron populations 1.22752 0.80915 1.02944 0.99914 1.87914 1.19588 1.27413 1.95343 1.21929 0.90475 0.85041 1.00233 1.21578 0.92910 1.05237 0.94771 1.20667 0.99278 0.94008 0.82323 1.46082 1.64424 1.21746 1.06791 1.21240 0.77136 0.87631 0.84020 1.90677 1.42264 1.23020 1.85493 1.21833 1.03218 0.99067 0.93663 1.21441 1.00441 0.99214 0.92213 1.19134 0.96915 0.94498 0.91141 1.21287 1.39018 1.03295 0.91940 0.92568 1.25019 0.95444 0.94945 0.99131 1.69961 1.44813 1.13917 1.25127 0.86592 0.79201 0.79188 0.83037 1.20689 1.21287 1.19821 1.22979 1.02537 0.98784 0.94864 1.23100 1.01678 0.92217 1.03001 0.93881 0.89504 0.94250 0.92644 0.93122 0.91817 0.90409 0.76902 0.89498 0.89444 0.92717 0.92724 0.96640 0.96619 0.93102 0.88304 0.88185 0.87864 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.06 10.61 -35.23 -0.37 -4.44 16 3 C 0.10 0.86 5.69 37.16 0.21 1.07 16 4 C -0.14 -1.27 1.80 -154.51 -0.28 -1.55 16 5 C 0.16 1.90 5.46 -4.05 -0.02 1.88 16 6 N -0.74 -9.17 5.41 -60.30 -0.33 -9.50 16 7 C 0.51 8.59 7.83 -10.98 -0.09 8.50 16 8 O -0.54 -11.31 15.98 5.55 0.09 -11.22 16 9 C -0.14 -2.35 5.70 -27.88 -0.16 -2.51 16 10 C -0.09 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 12 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 16 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 20 C -0.15 -1.14 9.94 -26.69 -0.27 -1.41 16 21 C -0.16 -1.12 9.94 -26.69 -0.27 -1.38 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 26 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.40 3.84 8.15 -40.82 -0.33 3.51 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -34.31 339.49 -7.23 -41.54 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.03 Total: -2.24 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.42 Total: -9.87 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.41 Total: -36.13 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.29 Total: -15.66 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.31 -7.23 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594108751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.942 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds