Wall clock time and date at job start Mon Mar 30 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99656 * 2 1 4 4 H 1.08999 * 109.50026 * 329.92945 * 3 2 1 5 5 C 1.53032 * 109.49841 * 90.00246 * 3 2 1 6 6 C 1.53039 * 109.53756 * 181.31384 * 5 3 2 7 7 C 1.53187 * 109.31440 * 298.63210 * 6 5 3 8 8 N 1.46925 * 108.77289 * 54.63383 * 7 6 5 9 9 C 1.34777 * 120.62929 * 126.37296 * 8 7 6 10 10 O 1.21279 * 120.00162 * 180.02562 * 9 8 7 11 11 C 1.50706 * 120.00146 * 359.97438 * 9 8 7 12 12 C 1.52999 * 109.46953 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46623 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47574 * 89.99780 * 18 16 14 20 20 H 1.48500 * 109.47346 * 209.99892 * 18 16 14 21 21 H 1.48499 * 109.47067 * 329.99541 * 18 16 14 22 22 C 1.46927 * 118.73993 * 306.64468 * 8 7 6 23 23 H 1.08994 * 109.47328 * 60.00228 * 1 2 3 24 24 H 1.09006 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47239 * 299.99897 * 1 2 3 26 26 H 1.08999 * 109.46557 * 61.29024 * 5 3 2 27 27 H 1.09007 * 109.45011 * 301.32605 * 5 3 2 28 28 H 1.09003 * 109.49880 * 178.68090 * 6 5 3 29 29 H 1.09000 * 109.52809 * 58.60069 * 6 5 3 30 30 H 1.09002 * 109.58828 * 294.84912 * 7 6 5 31 31 H 1.09001 * 109.70538 * 174.49285 * 7 6 5 32 32 H 1.09000 * 109.46974 * 60.00144 * 11 9 8 33 33 H 1.09001 * 109.46547 * 300.00234 * 11 9 8 34 34 H 1.09000 * 109.47486 * 60.00062 * 12 11 9 35 35 H 1.09001 * 109.47362 * 299.99339 * 12 11 9 36 36 H 1.08993 * 109.46955 * 300.00075 * 13 12 11 37 37 H 1.09000 * 109.47050 * 59.99904 * 13 12 11 38 38 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.58291 * 173.14757 * 22 8 7 40 40 H 1.09000 * 109.58321 * 293.56523 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3458 1.9995 -0.5148 5 6 2.2179 1.7721 1.4426 6 6 2.8100 3.1833 1.4437 7 6 4.1713 3.1623 0.7416 8 7 4.0042 2.5791 -0.5965 9 6 4.4312 3.2390 -1.6914 10 8 4.2871 2.7472 -2.7905 11 6 5.0867 4.5886 -1.5499 12 6 5.4733 5.1153 -2.9334 13 6 6.1383 6.4858 -2.7897 14 6 6.5197 7.0043 -4.1523 15 1 6.3093 6.4151 -5.0326 16 6 7.1382 8.2304 -4.2751 17 7 7.3948 8.9478 -3.2030 18 14 7.6103 8.8735 -5.9641 19 1 6.4850 9.6633 -6.5255 20 1 8.8118 9.7384 -5.8464 21 1 7.9097 7.7302 -6.8631 22 6 3.3574 1.2656 -0.7190 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.9015 1.0912 1.9497 27 1 1.2602 1.7796 1.9631 28 1 2.9359 3.5242 2.4714 29 1 2.1387 3.8605 0.9156 30 1 4.8709 2.5577 1.3189 31 1 4.5544 4.1788 0.6520 32 1 5.9807 4.4955 -0.9333 33 1 4.3909 5.2828 -1.0786 34 1 4.5791 5.2085 -3.5497 35 1 6.1690 4.4213 -3.4050 36 1 5.4423 7.1796 -2.3182 37 1 7.0324 6.3930 -2.1733 38 1 7.8296 9.8105 -3.2894 39 1 3.2013 1.0320 -1.7721 40 1 3.9893 0.5032 -0.2633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594277143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:37 Heat of formation + Delta-G solvation = -103.565159 kcal Electronic energy + Delta-G solvation = -19058.666912 eV Core-core repulsion = 16065.698451 eV Total energy + Delta-G solvation = -2992.968462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27788 -38.52109 -36.50621 -34.23317 -32.61554 -32.07761 -30.78197 -27.94750 -26.82071 -25.48501 -23.67568 -22.99701 -21.19850 -20.12437 -18.81166 -17.19145 -16.61001 -16.22575 -15.98841 -15.61095 -15.35295 -15.09260 -14.40596 -14.17499 -13.82764 -13.76823 -13.30254 -12.89529 -12.73241 -12.32895 -12.14923 -11.78257 -11.43967 -11.38120 -11.27183 -11.20326 -11.05681 -10.79667 -10.54092 -10.52135 -9.87738 -9.66200 -9.64780 -9.25694 -9.00939 -8.66707 -8.30991 -5.96837 -3.98081 2.77956 2.91508 3.35627 3.41390 3.46451 3.63929 4.42575 4.50378 4.52374 4.65764 4.80194 4.88716 5.00185 5.05166 5.07694 5.21181 5.33768 5.38569 5.39309 5.55428 5.56565 5.61893 5.66650 5.70262 5.73239 5.85685 5.95689 6.24350 6.43324 6.73566 6.89625 6.94410 7.17073 7.44451 7.71952 7.84689 8.03993 8.39126 8.48185 9.09022 9.65866 11.14717 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.044064 B = 0.003531 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.287529 B = 7926.809275 C = 8286.658442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.076 3.924 4 H 0.064 0.936 5 C -0.140 4.140 6 C -0.134 4.134 7 C 0.104 3.896 8 N -0.619 5.619 9 C 0.516 3.484 10 O -0.535 6.535 11 C -0.136 4.136 12 C -0.096 4.096 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.115 3.885 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.097 0.903 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -14.610 13.075 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.017 3.983 4 H 0.083 0.917 5 C -0.178 4.178 6 C -0.172 4.172 7 C -0.019 4.019 8 N -0.356 5.356 9 C 0.307 3.693 10 O -0.411 6.411 11 C -0.176 4.176 12 C -0.134 4.134 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.008 4.008 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.860 -14.881 12.513 22.774 hybrid contribution -0.028 0.664 -0.642 0.924 sum -11.888 -14.216 11.871 22.008 Atomic orbital electron populations 1.22794 0.80868 1.02740 1.00055 1.87865 1.19810 1.27378 1.95077 1.22385 0.95417 0.84709 0.95794 0.91750 1.22023 1.01750 0.97049 0.96965 1.21914 0.97078 0.96784 1.01456 1.21804 0.97030 1.00245 0.82853 1.48163 1.60591 1.19738 1.07081 1.21324 0.77435 0.87422 0.83165 1.90670 1.55898 1.68822 1.25681 1.21874 1.00796 0.91951 1.02975 1.21468 1.00658 0.99232 0.92017 1.19128 0.95380 0.89933 0.97183 1.21278 1.38158 1.02926 0.93220 0.92573 1.25019 0.95941 0.96939 0.96625 1.69963 1.42981 1.12719 1.28129 0.86590 0.77957 0.78857 0.84602 1.20690 1.21270 1.19824 1.21274 0.91828 0.85098 1.02600 0.93884 0.89544 0.94090 0.90828 0.91620 0.90063 0.91194 0.91172 0.88628 0.89280 0.89348 0.92725 0.92652 0.96631 0.96587 0.93082 0.88469 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.10 10.35 -35.23 -0.36 -4.46 16 3 C 0.08 0.79 2.75 -26.84 -0.07 0.71 16 4 H 0.06 0.70 7.79 -51.93 -0.40 0.29 16 5 C -0.14 -1.17 5.50 -26.69 -0.15 -1.31 16 6 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 7 C 0.10 0.98 6.34 -3.71 -0.02 0.96 16 8 N -0.62 -8.01 2.98 -173.03 -0.52 -8.52 16 9 C 0.52 8.64 7.70 -10.98 -0.08 8.55 16 10 O -0.54 -11.02 15.40 5.56 0.09 -10.93 16 11 C -0.14 -2.28 4.05 -27.88 -0.11 -2.39 16 12 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.12 1.41 6.06 -3.93 -0.02 1.39 16 23 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.27 7.85 -51.93 -0.41 -0.14 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.88 5.93 -51.93 -0.31 0.57 16 32 H 0.09 1.35 7.94 -51.93 -0.41 0.94 16 33 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 34 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.10 1.39 7.01 -51.93 -0.36 1.03 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -33.38 323.67 -7.29 -40.67 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.89 Total: -4.69 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.20 Total: -7.63 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.22 Total: -34.91 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.28 Total: -15.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.38 -7.29 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594277143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.892 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds