Wall clock time and date at job start Mon Mar 30 2020 04:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00301 * 2 1 4 4 C 1.52998 * 109.46777 * 269.99755 * 3 2 1 5 5 H 1.08997 * 110.67853 * 57.02978 * 4 3 2 6 6 C 1.54998 * 110.61705 * 180.02562 * 4 3 2 7 7 C 1.54817 * 102.12466 * 155.53959 * 6 4 3 8 8 C 1.54100 * 104.18606 * 339.09929 * 7 6 4 9 9 O 1.43746 * 107.29659 * 357.97343 * 8 7 6 10 10 C 1.34780 * 119.99622 * 179.97438 * 2 1 3 11 11 O 1.21285 * 119.99947 * 180.02562 * 10 2 1 12 12 C 1.50697 * 120.00300 * 0.02562 * 10 2 1 13 13 C 1.52994 * 109.47267 * 180.02562 * 12 10 2 14 14 C 1.53000 * 109.47389 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47430 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99904 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99768 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00351 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46946 * 89.99652 * 19 17 15 21 21 H 1.48497 * 109.47213 * 210.00135 * 19 17 15 22 22 H 1.48498 * 109.46953 * 330.00338 * 19 17 15 23 23 H 1.09009 * 109.46697 * 90.00076 * 1 2 3 24 24 H 1.08998 * 109.47857 * 210.00262 * 1 2 3 25 25 H 1.09000 * 109.47253 * 330.01261 * 1 2 3 26 26 H 1.09001 * 109.47290 * 149.99434 * 3 2 1 27 27 H 1.09000 * 109.46969 * 29.99347 * 3 2 1 28 28 H 1.09002 * 110.90913 * 37.32174 * 6 4 3 29 29 H 1.08997 * 110.90321 * 273.75291 * 6 4 3 30 30 H 1.08991 * 110.48506 * 97.77523 * 7 6 4 31 31 H 1.08995 * 110.48134 * 220.29142 * 7 6 4 32 32 H 1.09002 * 109.87699 * 117.39650 * 8 7 6 33 33 H 1.08999 * 109.87889 * 238.54603 * 8 7 6 34 34 H 1.08997 * 109.47315 * 300.00594 * 12 10 2 35 35 H 1.09002 * 109.46739 * 59.99815 * 12 10 2 36 36 H 1.09007 * 109.46985 * 300.00282 * 13 12 10 37 37 H 1.09002 * 109.47403 * 60.00208 * 13 12 10 38 38 H 1.09007 * 109.46750 * 299.99768 * 14 13 12 39 39 H 1.08992 * 109.47198 * 59.99509 * 14 13 12 40 40 H 0.96997 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 1.5142 1.7960 -1.9904 6 6 3.2281 3.0519 -1.4736 7 6 3.9194 2.9959 -2.8577 8 6 3.9300 1.4968 -3.2142 9 8 3.3467 0.7900 -2.1067 10 6 2.1388 -1.1673 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3853 -2.4723 0.0005 13 6 2.3795 -3.6353 0.0018 14 6 1.6145 -4.9603 0.0012 15 6 2.5937 -6.1058 0.0031 16 1 3.6555 -5.9085 0.0042 17 6 2.1341 -7.4056 0.0034 18 7 2.9887 -8.4053 0.0046 19 14 0.2975 -7.7470 0.0022 20 1 -0.1881 -7.8380 -1.3982 21 1 0.0319 -9.0291 0.7028 22 1 -0.4112 -6.6449 0.7011 23 1 -0.3633 0.0000 -1.0278 24 1 -0.3635 -0.8899 0.5138 25 1 -0.3634 0.8901 0.5136 26 1 3.1499 1.1384 0.5139 27 1 1.6085 2.0284 0.5137 28 1 3.9654 3.0938 -0.6719 29 1 2.5436 3.8982 -1.4147 30 1 3.3457 3.5590 -3.5937 31 1 4.9367 3.3817 -2.7918 32 1 3.3404 1.3258 -4.1149 33 1 4.9549 1.1602 -3.3702 34 1 0.7582 -2.5299 0.8902 35 1 0.7590 -2.5302 -0.8897 36 1 3.0069 -3.5779 -0.8877 37 1 3.0055 -3.5772 0.8923 38 1 0.9868 -5.0178 0.8906 39 1 0.9888 -5.0181 -0.8894 40 1 2.6654 -9.3198 0.0052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594285318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:52 Heat of formation + Delta-G solvation = -94.552961 kcal Electronic energy + Delta-G solvation = -19198.307348 eV Core-core repulsion = 16205.729684 eV Total energy + Delta-G solvation = -2992.577663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.00215 -38.94470 -35.47005 -34.22767 -32.31143 -32.06311 -30.86460 -28.33507 -26.96414 -25.56979 -23.38066 -21.79991 -21.40337 -20.06010 -18.87993 -17.06249 -16.64032 -16.27625 -16.21655 -15.83350 -15.34733 -14.99074 -14.14635 -13.91153 -13.74328 -13.16410 -12.77772 -12.73369 -12.62610 -12.54654 -12.21018 -11.94279 -11.80786 -11.59955 -11.41742 -11.30141 -10.95636 -10.84993 -10.71211 -9.89561 -9.74684 -9.69586 -9.60512 -9.25138 -9.04796 -8.57171 -8.45454 -5.95183 -3.92393 3.01790 3.10819 3.35674 3.42288 3.45775 3.76416 4.32759 4.51339 4.52150 4.66274 4.81006 4.90927 5.01520 5.05516 5.21140 5.29975 5.36134 5.38338 5.40326 5.45490 5.57434 5.60174 5.66069 5.67439 5.74849 5.81193 5.88747 6.21059 6.54194 6.66886 6.80019 6.89305 7.01523 7.45806 7.54157 7.55333 7.89074 8.56410 8.66074 9.12213 9.67106 11.18674 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.004013 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.156944 B = 6975.561649 C = 7390.398163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.628 5.628 3 C 0.123 3.877 4 C 0.058 3.942 5 H 0.066 0.934 6 C -0.148 4.148 7 C -0.154 4.154 8 C 0.044 3.956 9 O -0.350 6.350 10 C 0.515 3.485 11 O -0.516 6.516 12 C -0.138 4.138 13 C -0.087 4.087 14 C -0.014 4.014 15 C -0.516 4.516 16 H 0.073 0.927 17 C 0.063 3.937 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 26.148 -2.905 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.363 5.363 3 C 0.000 4.000 4 C -0.001 4.001 5 H 0.084 0.916 6 C -0.187 4.187 7 C -0.192 4.192 8 C -0.034 4.034 9 O -0.269 6.269 10 C 0.304 3.696 11 O -0.390 6.390 12 C -0.178 4.178 13 C -0.125 4.125 14 C -0.051 4.051 15 C -0.555 4.555 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.552 25.704 -2.832 26.448 hybrid contribution -1.135 0.025 -0.271 1.167 sum -6.687 25.729 -3.103 26.764 Atomic orbital electron populations 1.21778 0.79811 1.03108 1.01658 1.47889 1.06604 1.05868 1.75955 1.21447 0.98640 0.85614 0.94348 1.23622 0.93495 0.88289 0.94669 0.91574 1.23124 0.99902 0.97665 0.97960 1.22918 1.01816 0.97350 0.97125 1.23136 0.99157 0.90762 0.90312 1.89162 1.59570 1.35123 1.42997 1.21070 0.88341 0.85191 0.75006 1.90695 1.14010 1.86999 1.47271 1.21870 1.00291 0.92485 1.03177 1.21262 0.96619 0.92127 1.02501 1.19606 0.96319 0.93236 0.95990 1.21185 0.94690 0.89436 1.50143 0.90935 1.25054 0.97616 0.96254 0.94782 1.69929 1.34099 0.98911 1.51577 0.86756 0.86386 0.77594 0.78387 1.20375 1.21494 1.19046 0.92953 0.90532 0.91524 0.89147 0.89623 0.90183 0.90326 0.90932 0.90519 0.92792 0.89921 0.89683 0.89667 0.92092 0.92180 0.96745 0.97158 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.29 59.85 0.62 1.32 16 2 N -0.63 -8.02 2.87 -181.57 -0.52 -8.54 16 3 C 0.12 1.35 5.24 -4.04 -0.02 1.33 16 4 C 0.06 0.63 3.59 -25.68 -0.09 0.53 16 5 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 6 C -0.15 -1.18 6.58 -24.72 -0.16 -1.34 16 7 C -0.15 -1.23 7.01 -25.20 -0.18 -1.40 16 8 C 0.04 0.48 7.70 37.73 0.29 0.77 16 9 O -0.35 -5.19 10.19 -39.84 -0.41 -5.60 16 10 C 0.51 8.84 7.36 -10.99 -0.08 8.76 16 11 O -0.52 -10.97 14.86 0.95 0.01 -10.96 16 12 C -0.14 -2.34 4.25 -27.89 -0.12 -2.46 16 13 C -0.09 -1.92 4.44 -26.73 -0.12 -2.04 16 14 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 15 C -0.52 -15.51 9.66 -34.44 -0.33 -15.84 16 16 H 0.07 2.37 7.99 -52.49 -0.42 1.95 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.93 13.96 55.43 0.77 -28.15 16 19 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 24 H 0.08 0.65 6.44 -51.93 -0.33 0.32 16 25 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 26 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 27 H 0.09 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.26 7.40 -51.93 -0.38 0.88 16 35 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 36 H 0.06 1.44 8.10 -51.92 -0.42 1.02 16 37 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 38 H 0.01 0.35 7.20 -51.92 -0.37 -0.03 16 39 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -36.25 323.21 -7.26 -43.52 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.92 Total: -3.63 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.41 Total: -9.02 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.25 Total: -36.69 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.39 Total: -16.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.25 -7.26 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594285318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.038 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds