Wall clock time and date at job start Mon Mar 30 2020 04:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00301 * 2 1 4 4 C 1.52998 * 109.46777 * 269.99755 * 3 2 1 5 5 H 1.08997 * 110.67853 * 57.02978 * 4 3 2 6 6 C 1.54998 * 110.61705 * 180.02562 * 4 3 2 7 7 C 1.54817 * 102.12466 * 155.53959 * 6 4 3 8 8 C 1.54100 * 104.18606 * 339.09929 * 7 6 4 9 9 O 1.43746 * 107.29659 * 357.97343 * 8 7 6 10 10 C 1.34780 * 119.99622 * 179.97438 * 2 1 3 11 11 O 1.21285 * 119.99947 * 180.02562 * 10 2 1 12 12 C 1.50697 * 120.00300 * 0.02562 * 10 2 1 13 13 C 1.52994 * 109.47267 * 180.02562 * 12 10 2 14 14 C 1.53000 * 109.47389 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47430 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99904 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99768 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00351 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46946 * 89.99652 * 19 17 15 21 21 H 1.48497 * 109.47213 * 210.00135 * 19 17 15 22 22 H 1.48498 * 109.46953 * 330.00338 * 19 17 15 23 23 H 1.09009 * 109.46697 * 90.00076 * 1 2 3 24 24 H 1.08998 * 109.47857 * 210.00262 * 1 2 3 25 25 H 1.09000 * 109.47253 * 330.01261 * 1 2 3 26 26 H 1.09001 * 109.47290 * 149.99434 * 3 2 1 27 27 H 1.09000 * 109.46969 * 29.99347 * 3 2 1 28 28 H 1.09002 * 110.90913 * 37.32174 * 6 4 3 29 29 H 1.08997 * 110.90321 * 273.75291 * 6 4 3 30 30 H 1.08991 * 110.48506 * 97.77523 * 7 6 4 31 31 H 1.08995 * 110.48134 * 220.29142 * 7 6 4 32 32 H 1.09002 * 109.87699 * 117.39650 * 8 7 6 33 33 H 1.08999 * 109.87889 * 238.54603 * 8 7 6 34 34 H 1.08997 * 109.47315 * 300.00594 * 12 10 2 35 35 H 1.09002 * 109.46739 * 59.99815 * 12 10 2 36 36 H 1.09007 * 109.46985 * 300.00282 * 13 12 10 37 37 H 1.09002 * 109.47403 * 60.00208 * 13 12 10 38 38 H 1.09007 * 109.46750 * 299.99768 * 14 13 12 39 39 H 1.08992 * 109.47198 * 59.99509 * 14 13 12 40 40 H 0.96997 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 1.5142 1.7960 -1.9904 6 6 3.2281 3.0519 -1.4736 7 6 3.9194 2.9959 -2.8577 8 6 3.9300 1.4968 -3.2142 9 8 3.3467 0.7900 -2.1067 10 6 2.1388 -1.1673 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3853 -2.4723 0.0005 13 6 2.3795 -3.6353 0.0018 14 6 1.6145 -4.9603 0.0012 15 6 2.5937 -6.1058 0.0031 16 1 3.6555 -5.9085 0.0042 17 6 2.1341 -7.4056 0.0034 18 7 2.9887 -8.4053 0.0046 19 14 0.2975 -7.7470 0.0022 20 1 -0.1881 -7.8380 -1.3982 21 1 0.0319 -9.0291 0.7028 22 1 -0.4112 -6.6449 0.7011 23 1 -0.3633 0.0000 -1.0278 24 1 -0.3635 -0.8899 0.5138 25 1 -0.3634 0.8901 0.5136 26 1 3.1499 1.1384 0.5139 27 1 1.6085 2.0284 0.5137 28 1 3.9654 3.0938 -0.6719 29 1 2.5436 3.8982 -1.4147 30 1 3.3457 3.5590 -3.5937 31 1 4.9367 3.3817 -2.7918 32 1 3.3404 1.3258 -4.1149 33 1 4.9549 1.1602 -3.3702 34 1 0.7582 -2.5299 0.8902 35 1 0.7590 -2.5302 -0.8897 36 1 3.0069 -3.5779 -0.8877 37 1 3.0055 -3.5772 0.8923 38 1 0.9868 -5.0178 0.8906 39 1 0.9888 -5.0181 -0.8894 40 1 2.6654 -9.3198 0.0052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594285318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:50 Heat of formation + Delta-G solvation = -119.940188 kcal Electronic energy + Delta-G solvation = -19199.408220 eV Core-core repulsion = 16205.729684 eV Total energy + Delta-G solvation = -2993.678536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.05639 -39.96603 -36.61760 -36.09333 -34.16054 -33.06949 -31.86562 -30.02984 -27.74041 -26.81046 -24.99413 -22.76797 -22.16034 -21.83458 -20.09201 -18.84835 -18.08476 -17.25504 -17.20643 -16.90082 -16.42575 -16.25654 -15.96599 -15.20706 -14.78522 -14.57605 -14.26798 -13.99420 -13.83297 -13.45973 -13.30929 -13.19615 -12.94750 -12.63761 -12.57803 -12.44539 -12.25675 -12.09385 -11.76993 -11.68421 -11.58659 -11.50069 -11.31653 -10.74964 -10.68687 -10.56225 -9.57240 -8.27567 -6.33484 1.38372 1.42465 1.54766 1.76740 2.11275 2.39681 2.98714 3.07212 3.63819 3.75961 3.81271 4.00796 4.13157 4.14495 4.21478 4.26032 4.37507 4.43804 4.57479 4.66388 4.71443 4.78506 4.82595 4.90265 4.92416 4.93584 4.96962 5.02217 5.04562 5.08450 5.21220 5.53545 5.59607 5.66109 5.68262 6.08716 6.30696 6.46033 6.74834 7.30485 7.34628 8.90363 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.004013 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.156944 B = 6975.561649 C = 7390.398163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.619 5.619 3 C 0.118 3.882 4 C 0.052 3.948 5 H 0.080 0.920 6 C -0.141 4.141 7 C -0.147 4.147 8 C 0.033 3.967 9 O -0.399 6.399 10 C 0.507 3.493 11 O -0.574 6.574 12 C -0.127 4.127 13 C -0.079 4.079 14 C -0.007 4.007 15 C -0.541 4.541 16 H 0.017 0.983 17 C -0.004 4.004 18 N -0.957 5.957 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.235 1.235 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.029 0.971 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 28.631 -2.864 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.352 5.352 3 C -0.004 4.004 4 C -0.007 4.007 5 H 0.098 0.902 6 C -0.179 4.179 7 C -0.185 4.185 8 C -0.044 4.044 9 O -0.319 6.319 10 C 0.297 3.703 11 O -0.453 6.453 12 C -0.167 4.167 13 C -0.117 4.117 14 C -0.044 4.044 15 C -0.579 4.579 16 H 0.035 0.965 17 C -0.200 4.200 18 N -0.598 5.598 19 Si 0.786 3.214 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.158 1.158 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.798 28.250 -2.794 30.031 hybrid contribution 0.284 -0.734 -0.295 0.841 sum -9.514 27.516 -3.089 29.278 Atomic orbital electron populations 1.22120 0.76807 1.05202 1.03026 1.47918 1.08469 1.05092 1.73733 1.21690 0.98029 0.85740 0.94984 1.23832 0.93802 0.88954 0.94064 0.90236 1.23120 1.00003 0.97170 0.97578 1.22908 1.02758 0.95096 0.97736 1.23290 0.98452 0.92812 0.89817 1.89129 1.60748 1.37682 1.44325 1.21122 0.87699 0.86643 0.74858 1.90679 1.16384 1.87898 1.50340 1.21715 0.99010 0.90248 1.05723 1.21028 0.97138 0.93667 0.99892 1.19529 0.95474 0.92145 0.97263 1.21554 0.93442 0.92100 1.50836 0.96483 1.26223 1.04450 0.95529 0.93758 1.70112 1.37356 0.99687 1.52667 0.85466 0.78186 0.78374 0.79420 1.18902 1.21011 1.15769 0.91857 0.89940 0.88085 0.92224 0.85106 0.90843 0.87114 0.88778 0.89882 0.92304 0.91155 0.86607 0.87353 0.95180 0.94657 0.94944 0.95410 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.29 127.77 1.31 2.23 16 2 N -0.62 -14.48 2.87 -846.74 -2.43 -16.90 16 3 C 0.12 2.37 5.24 86.38 0.45 2.83 16 4 C 0.05 1.02 3.59 31.28 0.11 1.13 16 5 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.14 -1.90 6.58 31.90 0.21 -1.69 16 7 C -0.15 -2.07 7.01 31.59 0.22 -1.85 16 8 C 0.03 0.73 7.70 72.35 0.56 1.29 16 9 O -0.40 -12.07 10.19 -144.58 -1.47 -13.55 16 10 C 0.51 17.29 7.36 87.66 0.65 17.94 16 11 O -0.57 -25.69 14.86 1.36 0.02 -25.67 16 12 C -0.13 -4.11 4.25 29.85 0.13 -3.98 16 13 C -0.08 -3.57 4.44 30.59 0.14 -3.44 16 14 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 15 C -0.54 -33.73 9.66 25.60 0.25 -33.48 16 16 H 0.02 1.19 7.99 -2.91 -0.02 1.17 16 17 C 0.00 -0.24 5.47 84.65 0.46 0.23 16 18 N -0.96 -63.12 13.96 21.45 0.30 -62.82 16 19 Si 0.96 44.84 27.47 68.60 1.88 46.73 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.23 -9.71 6.54 99.48 0.65 -9.06 16 23 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.08 1.02 6.44 -2.39 -0.02 1.01 16 25 H 0.10 0.68 7.89 -2.39 -0.02 0.66 16 26 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 27 H 0.13 1.38 7.89 -2.39 -0.02 1.37 16 28 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 3.02 7.40 -2.39 -0.02 3.01 16 35 H 0.11 3.00 8.11 -2.39 -0.02 2.98 16 36 H 0.03 1.49 8.10 -2.38 -0.02 1.48 16 37 H 0.03 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.03 1.48 7.20 -2.38 -0.02 1.46 16 39 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 40 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -85.64 323.21 3.84 -81.80 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.93 Total: 9.41 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 4.61 Total: -19.00 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.13 Total: -79.72 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.45 Total: -39.22 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -85.64 3.84 -81.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594285318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.143 kcal (2) G-P(sol) polarization free energy of solvation -85.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds