Wall clock time and date at job start Mon Mar 30 2020 04:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 6 6 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 7 7 C 1.53003 * 109.47004 * 185.00070 * 4 3 2 8 8 C 1.52996 * 117.49827 * 248.74839 * 7 4 3 9 9 C 1.53001 * 117.49874 * 180.08381 * 7 4 3 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 2 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47279 * 89.99888 * 19 17 15 21 21 H 1.48500 * 109.47080 * 209.99921 * 19 17 15 22 22 H 1.48504 * 109.47118 * 329.99282 * 19 17 15 23 23 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 24 24 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 26 26 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 27 27 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 28 28 H 0.96703 * 114.00490 * 59.99746 * 6 4 3 29 29 H 1.09002 * 115.55026 * 34.41659 * 7 4 3 30 30 H 1.08996 * 117.49781 * 359.97438 * 8 7 4 31 31 H 1.09005 * 117.49886 * 145.02416 * 8 7 4 32 32 H 1.09004 * 117.49932 * 214.97559 * 9 7 4 33 33 H 1.08999 * 117.49829 * 0.02562 * 9 7 4 34 34 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 35 35 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 36 36 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 37 37 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 38 38 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 39 39 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 40 40 H 0.97002 * 119.99338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7549 1.9815 6 8 3.3210 0.7725 2.0813 7 6 3.1061 3.0938 1.4443 8 6 4.5637 3.1858 1.9000 9 6 3.4447 3.7133 2.8017 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0018 14 6 1.6147 -4.9602 -0.0012 15 6 2.5939 -6.1057 -0.0018 16 1 3.6557 -5.9084 -0.0022 17 6 2.1343 -7.4056 -0.0019 18 7 0.8413 -7.6459 -0.0010 19 14 3.3482 -8.8254 -0.0020 20 1 3.6699 -9.2018 1.3981 21 1 2.7483 -9.9895 -0.7021 22 1 4.5915 -8.4137 -0.7021 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 4.1838 0.6810 1.6541 29 1 2.7836 3.7671 0.6501 30 1 5.0569 2.2610 2.1989 31 1 5.2001 3.9201 1.4060 32 1 3.3454 4.7944 2.9003 33 1 3.2023 3.1352 3.6933 34 1 0.7591 -2.5302 0.8897 35 1 0.7585 -2.5298 -0.8903 36 1 3.0057 -3.5772 -0.8922 37 1 3.0069 -3.5779 0.8878 38 1 0.9889 -5.0181 0.8894 39 1 0.9871 -5.0178 -0.8905 40 1 0.5180 -8.5605 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594313881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:02 Heat of formation + Delta-G solvation = -78.237591 kcal Electronic energy + Delta-G solvation = -19006.454544 eV Core-core repulsion = 16014.584369 eV Total energy + Delta-G solvation = -2991.870176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.96320 -38.55841 -35.60742 -34.81700 -34.14213 -32.03301 -30.12175 -27.70974 -26.65724 -24.53368 -23.01343 -22.58304 -20.69890 -20.22656 -18.84780 -17.07124 -16.79256 -16.40517 -16.17246 -15.73902 -15.22516 -14.76483 -14.37089 -14.19345 -13.56953 -13.18066 -12.81515 -12.65906 -12.49669 -12.20030 -11.97960 -11.74400 -11.64684 -11.45766 -11.27920 -10.76906 -10.75161 -10.51902 -10.49579 -10.41734 -10.25779 -9.61029 -9.56581 -9.20133 -8.96296 -8.50946 -8.28268 -5.94134 -3.95211 2.96942 3.10358 3.37454 3.42982 3.47658 3.48105 4.24402 4.45898 4.52303 4.61670 4.67031 4.79006 4.96947 5.06791 5.11549 5.24193 5.35117 5.38968 5.41929 5.47414 5.60713 5.62234 5.77211 5.80893 5.84364 5.87984 5.90300 6.31480 6.53916 6.79592 6.99867 7.22147 7.50371 7.65452 7.75630 7.88985 8.07101 8.50498 8.51966 9.11963 9.68495 11.17459 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.037317 B = 0.003621 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.142663 B = 7731.254224 C = 8204.361906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.087 3.913 4 C 0.121 3.879 5 H 0.099 0.901 6 O -0.549 6.549 7 C -0.192 4.192 8 C -0.176 4.176 9 C -0.170 4.170 10 C 0.520 3.480 11 O -0.534 6.534 12 C -0.136 4.136 13 C -0.094 4.094 14 C 0.020 3.980 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.379 0.621 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 23.673 1.395 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C -0.036 4.036 4 C 0.060 3.940 5 H 0.116 0.884 6 O -0.355 6.355 7 C -0.211 4.211 8 C -0.213 4.213 9 C -0.207 4.207 10 C 0.310 3.690 11 O -0.410 6.410 12 C -0.176 4.176 13 C -0.132 4.132 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.228 0.772 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.564 23.443 1.775 23.516 hybrid contribution 0.794 -0.562 -0.418 1.059 sum 0.230 22.881 1.357 22.922 Atomic orbital electron populations 1.21786 0.79603 1.03281 1.01753 1.47861 1.06764 1.05713 1.75489 1.22073 0.98676 0.85912 0.96963 1.21795 0.93461 0.85383 0.93335 0.88372 1.86585 1.29835 1.62619 1.56479 1.23097 0.99415 0.99323 0.99284 1.22968 0.90986 1.03507 1.03868 1.22908 1.03289 1.00272 0.94217 1.21163 0.88233 0.85330 0.74246 1.90605 1.14307 1.87266 1.48809 1.21850 1.00332 0.92072 1.03336 1.21439 0.96759 0.93415 1.01599 1.19128 0.95414 0.90071 0.97043 1.21284 0.93265 0.90968 1.49970 0.92588 1.25024 0.95119 0.98970 0.95441 1.69969 1.12506 1.20006 1.51339 0.86594 0.81402 0.81934 0.78097 1.20679 1.21293 1.19839 0.92663 0.91574 0.90387 0.89598 0.90213 0.77206 0.87329 0.88066 0.88844 0.89017 0.88417 0.89490 0.89655 0.92836 0.92689 0.96655 0.96678 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.85 0.61 1.34 16 2 N -0.62 -7.82 2.86 -181.57 -0.52 -8.34 16 3 C 0.09 0.91 5.09 -4.04 -0.02 0.89 16 4 C 0.12 1.24 3.57 -26.73 -0.10 1.14 16 5 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 6 O -0.55 -7.34 11.36 -42.91 -0.49 -7.83 16 7 C -0.19 -1.57 5.70 -90.62 -0.52 -2.09 16 8 C -0.18 -1.45 9.74 -26.69 -0.26 -1.71 16 9 C -0.17 -1.37 10.19 -26.69 -0.27 -1.65 16 10 C 0.52 8.70 7.30 -10.98 -0.08 8.62 16 11 O -0.53 -10.54 14.54 -2.12 -0.03 -10.57 16 12 C -0.14 -2.37 4.25 -27.88 -0.12 -2.49 16 13 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 19 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 25 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 26 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 27 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.38 4.76 7.26 45.56 0.33 5.09 16 29 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.10 0.90 6.37 -51.93 -0.33 0.57 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.41 7.40 -51.93 -0.38 1.03 16 35 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 36 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -33.83 329.50 -7.90 -41.73 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.13 Total: 1.23 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.42 Total: -11.76 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.22 Total: -35.06 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.52 Total: -18.40 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.83 -7.90 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594313881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.503 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds