Wall clock time and date at job start Mon Mar 30 2020 04:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 6 6 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 7 7 C 1.53003 * 109.47004 * 185.00070 * 4 3 2 8 8 C 1.52996 * 117.49827 * 248.74839 * 7 4 3 9 9 C 1.53001 * 117.49874 * 180.08381 * 7 4 3 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 2 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47279 * 89.99888 * 19 17 15 21 21 H 1.48500 * 109.47080 * 209.99921 * 19 17 15 22 22 H 1.48504 * 109.47118 * 329.99282 * 19 17 15 23 23 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 24 24 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 26 26 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 27 27 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 28 28 H 0.96703 * 114.00490 * 59.99746 * 6 4 3 29 29 H 1.09002 * 115.55026 * 34.41659 * 7 4 3 30 30 H 1.08996 * 117.49781 * 359.97438 * 8 7 4 31 31 H 1.09005 * 117.49886 * 145.02416 * 8 7 4 32 32 H 1.09004 * 117.49932 * 214.97559 * 9 7 4 33 33 H 1.08999 * 117.49829 * 0.02562 * 9 7 4 34 34 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 35 35 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 36 36 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 37 37 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 38 38 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 39 39 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 40 40 H 0.97002 * 119.99338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7549 1.9815 6 8 3.3210 0.7725 2.0813 7 6 3.1061 3.0938 1.4443 8 6 4.5637 3.1858 1.9000 9 6 3.4447 3.7133 2.8017 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0018 14 6 1.6147 -4.9602 -0.0012 15 6 2.5939 -6.1057 -0.0018 16 1 3.6557 -5.9084 -0.0022 17 6 2.1343 -7.4056 -0.0019 18 7 0.8413 -7.6459 -0.0010 19 14 3.3482 -8.8254 -0.0020 20 1 3.6699 -9.2018 1.3981 21 1 2.7483 -9.9895 -0.7021 22 1 4.5915 -8.4137 -0.7021 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 4.1838 0.6810 1.6541 29 1 2.7836 3.7671 0.6501 30 1 5.0569 2.2610 2.1989 31 1 5.2001 3.9201 1.4060 32 1 3.3454 4.7944 2.9003 33 1 3.2023 3.1352 3.6933 34 1 0.7591 -2.5302 0.8897 35 1 0.7585 -2.5298 -0.8903 36 1 3.0057 -3.5772 -0.8922 37 1 3.0069 -3.5779 0.8878 38 1 0.9889 -5.0181 0.8894 39 1 0.9871 -5.0178 -0.8905 40 1 0.5180 -8.5605 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594313881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:02 Heat of formation + Delta-G solvation = -100.385734 kcal Electronic energy + Delta-G solvation = -19007.414960 eV Core-core repulsion = 16014.584369 eV Total energy + Delta-G solvation = -2992.830591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.06939 -39.47596 -36.63962 -36.08443 -35.72528 -34.02847 -31.20809 -29.42097 -27.53903 -26.13375 -24.34008 -23.28323 -22.03994 -21.42761 -20.08338 -18.51088 -18.04166 -17.71439 -17.29709 -16.83029 -16.51945 -16.30221 -15.83029 -15.21096 -14.70029 -14.52558 -14.10575 -13.88142 -13.74568 -13.54672 -13.27100 -13.06330 -12.75710 -12.61647 -12.48251 -12.38367 -12.34470 -12.23085 -11.55417 -11.44379 -11.41801 -11.25365 -11.18447 -11.01146 -10.61899 -10.54579 -9.49996 -8.20379 -6.30494 1.39343 1.40842 1.52363 1.71763 2.08097 2.41821 2.83102 3.12403 3.42415 3.73275 3.73424 3.95119 4.00504 4.18212 4.22768 4.25974 4.27991 4.39205 4.43558 4.61143 4.71771 4.78377 4.80557 4.96152 5.00215 5.01021 5.04639 5.11607 5.19126 5.21797 5.26114 5.53030 5.62301 5.75029 5.86163 6.26664 6.40466 6.72950 6.84697 7.27740 7.38155 8.91309 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.037317 B = 0.003621 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.142663 B = 7731.254224 C = 8204.361906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.615 5.615 3 C 0.087 3.913 4 C 0.119 3.881 5 H 0.102 0.898 6 O -0.573 6.573 7 C -0.185 4.185 8 C -0.184 4.184 9 C -0.169 4.169 10 C 0.516 3.484 11 O -0.574 6.574 12 C -0.129 4.129 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.268 1.268 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.378 0.622 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.037 0.963 38 H -0.002 1.002 39 H 0.001 0.999 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 25.076 1.035 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.348 5.348 3 C -0.036 4.036 4 C 0.059 3.941 5 H 0.119 0.881 6 O -0.380 6.380 7 C -0.204 4.204 8 C -0.221 4.221 9 C -0.206 4.206 10 C 0.306 3.694 11 O -0.454 6.454 12 C -0.168 4.168 13 C -0.118 4.118 14 C -0.010 4.010 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.192 1.192 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.227 0.773 29 H 0.149 0.851 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.122 24.888 1.417 24.954 hybrid contribution 0.888 -0.954 -0.295 1.336 sum -0.234 23.934 1.123 23.962 Atomic orbital electron populations 1.22082 0.77237 1.04628 1.03302 1.47861 1.08283 1.05156 1.73452 1.22251 0.98472 0.85541 0.97326 1.21909 0.93263 0.85986 0.92918 0.88068 1.86553 1.30237 1.63872 1.57367 1.23061 0.99009 0.98351 0.99990 1.23010 0.91348 1.03364 1.04329 1.22941 1.02975 1.01094 0.93613 1.20929 0.87683 0.86277 0.74554 1.90592 1.15796 1.87910 1.51080 1.21673 0.99264 0.91029 1.04851 1.21138 0.97004 0.93561 1.00073 1.19007 0.94873 0.91740 0.95375 1.21692 0.93608 0.92543 1.50761 0.93085 1.25924 0.97142 1.01822 0.94641 1.70072 1.14314 1.21015 1.51583 0.85483 0.78957 0.78279 0.78557 1.19725 1.20193 1.19216 0.90948 0.88622 0.90802 0.91276 0.86431 0.77282 0.85053 0.89475 0.87478 0.87230 0.89866 0.88246 0.87876 0.94105 0.94406 0.98321 0.98077 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.24 127.77 1.31 2.37 16 2 N -0.61 -14.29 2.86 -846.74 -2.42 -16.71 16 3 C 0.09 1.62 5.09 86.38 0.44 2.06 16 4 C 0.12 2.25 3.57 30.59 0.11 2.36 16 5 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 6 O -0.57 -15.45 11.36 -141.64 -1.61 -17.06 16 7 C -0.19 -2.63 5.70 -10.79 -0.06 -2.69 16 8 C -0.18 -2.82 9.74 30.62 0.30 -2.52 16 9 C -0.17 -2.46 10.19 30.62 0.31 -2.15 16 10 C 0.52 17.09 7.30 87.66 0.64 17.73 16 11 O -0.57 -23.12 14.54 4.32 0.06 -23.06 16 12 C -0.13 -4.45 4.25 29.85 0.13 -4.33 16 13 C -0.08 -3.65 4.44 30.59 0.14 -3.52 16 14 C 0.03 1.48 4.97 29.85 0.15 1.63 16 15 C -0.55 -32.96 9.11 25.60 0.23 -32.73 16 16 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 17 C 0.00 0.15 5.46 84.65 0.46 0.62 16 18 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 19 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 0.94 8.07 -2.39 -0.02 0.93 16 25 H 0.07 1.23 6.44 -2.38 -0.02 1.21 16 26 H 0.07 1.58 7.42 -2.39 -0.02 1.56 16 27 H 0.12 1.33 8.07 -2.38 -0.02 1.31 16 28 H 0.38 9.94 7.26 -74.06 -0.54 9.40 16 29 H 0.13 1.29 8.11 -2.39 -0.02 1.28 16 30 H 0.09 1.59 6.37 -2.39 -0.02 1.57 16 31 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 3.18 7.40 -2.39 -0.02 3.16 16 35 H 0.10 3.18 8.11 -2.39 -0.02 3.16 16 36 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.12 329.50 2.97 -71.15 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.47 Total: 15.92 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.15 Total: -21.17 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.13 Total: -73.65 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.55 Total: -40.12 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.12 2.97 -71.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594313881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.234 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds