Wall clock time and date at job start Mon Mar 30 2020 04:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99969 * 2 1 4 4 C 1.53001 * 109.46900 * 90.00221 * 3 2 1 5 5 H 1.08999 * 109.47164 * 60.00014 * 4 3 2 6 6 O 1.42903 * 109.47171 * 299.99748 * 4 3 2 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 3 2 8 8 C 1.53003 * 117.49796 * 248.74870 * 7 4 3 9 9 C 1.52999 * 117.50160 * 180.08544 * 7 4 3 10 10 C 1.34777 * 120.00156 * 180.02562 * 2 1 3 11 11 O 1.21278 * 120.00006 * 179.97438 * 10 2 1 12 12 C 1.50696 * 119.99953 * 0.02562 * 10 2 1 13 13 C 1.53005 * 109.47199 * 179.97438 * 12 10 2 14 14 C 1.52997 * 109.46963 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46857 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99853 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00164 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99449 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47340 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46903 * 120.00327 * 19 17 15 22 22 H 1.48497 * 109.47158 * 240.00056 * 19 17 15 23 23 H 1.08999 * 109.47279 * 89.99778 * 1 2 3 24 24 H 1.09004 * 109.47039 * 209.99535 * 1 2 3 25 25 H 1.08997 * 109.47422 * 329.99508 * 1 2 3 26 26 H 1.08999 * 109.47200 * 330.00257 * 3 2 1 27 27 H 1.08997 * 109.47487 * 210.00311 * 3 2 1 28 28 H 0.96700 * 114.00311 * 300.00378 * 6 4 3 29 29 H 1.09002 * 115.54826 * 34.41110 * 7 4 3 30 30 H 1.09000 * 117.49626 * 359.97438 * 8 7 4 31 31 H 1.09000 * 117.49901 * 145.01813 * 8 7 4 32 32 H 1.08998 * 117.50055 * 214.97770 * 9 7 4 33 33 H 1.09001 * 117.49592 * 359.97370 * 9 7 4 34 34 H 1.08996 * 109.47280 * 299.99578 * 12 10 2 35 35 H 1.09003 * 109.47429 * 60.00077 * 12 10 2 36 36 H 1.08996 * 109.46911 * 300.00111 * 13 12 10 37 37 H 1.08996 * 109.46908 * 60.00102 * 13 12 10 38 38 H 1.08996 * 109.47577 * 299.99922 * 14 13 12 39 39 H 1.09003 * 109.47368 * 60.00565 * 14 13 12 40 40 H 0.97006 * 119.99816 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0416 0.9506 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2169 3.0357 1.4427 8 6 4.6657 3.0156 1.9344 9 6 3.5719 3.6464 2.7998 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3855 -2.4723 -0.0017 13 6 2.3797 -3.6352 -0.0027 14 6 1.6147 -4.9602 -0.0033 15 6 2.5941 -6.1056 -0.0049 16 1 3.6559 -5.9082 -0.0051 17 6 2.1345 -7.4056 -0.0051 18 7 0.8416 -7.6459 -0.0044 19 14 3.3485 -8.8254 -0.0065 20 1 4.7343 -8.2918 -0.0065 21 1 3.1388 -9.6570 1.2058 22 1 3.1373 -9.6560 -1.2191 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6084 2.0284 -0.5138 27 1 3.1499 1.1385 -0.5139 28 1 0.6267 2.5439 1.7127 29 1 2.9703 3.7207 0.6315 30 1 5.0740 2.0582 2.2582 31 1 5.3720 3.6877 1.4470 32 1 3.5591 4.7333 2.8814 33 1 3.2603 3.1042 3.6926 34 1 0.7585 -2.5307 0.8880 35 1 0.7591 -2.5295 -0.8920 36 1 3.0064 -3.5766 -0.8926 37 1 3.0063 -3.5782 0.8873 38 1 0.9884 -5.0185 0.8868 39 1 0.9878 -5.0175 -0.8931 40 1 0.5182 -8.5605 -0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594313884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:06 Heat of formation + Delta-G solvation = -80.053643 kcal Electronic energy + Delta-G solvation = -18871.876610 eV Core-core repulsion = 15879.927684 eV Total energy + Delta-G solvation = -2991.948926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -39.96545 -38.48736 -35.97555 -34.92663 -34.18442 -32.06018 -30.11713 -27.74490 -26.44954 -24.54057 -22.96854 -22.58269 -21.14990 -20.23846 -18.87121 -17.03469 -16.68846 -16.34738 -16.17528 -15.97205 -15.07591 -14.86750 -14.38037 -14.29042 -13.65033 -13.19517 -13.01585 -12.71460 -12.49804 -12.23063 -11.94401 -11.79500 -11.63001 -11.39666 -11.27813 -10.84261 -10.79437 -10.54984 -10.52588 -10.48848 -10.35956 -9.63350 -9.60684 -9.22297 -8.96836 -8.52916 -8.29653 -5.95152 -3.96243 2.90860 3.05571 3.35531 3.42653 3.43832 3.48704 4.26247 4.28852 4.51526 4.59672 4.71813 4.76158 4.90241 5.08026 5.13161 5.17153 5.39396 5.40932 5.41961 5.56827 5.60529 5.67076 5.70644 5.76207 5.80809 5.87311 5.96428 6.29746 6.52515 6.77067 6.97582 7.19973 7.39734 7.48934 7.74525 7.87474 8.05957 8.44122 8.50298 9.11101 9.67572 11.16454 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.035255 B = 0.003541 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.027505 B = 7906.206757 C = 8353.882082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.619 5.619 3 C 0.089 3.911 4 C 0.121 3.879 5 H 0.103 0.897 6 O -0.551 6.551 7 C -0.193 4.193 8 C -0.171 4.171 9 C -0.166 4.166 10 C 0.513 3.487 11 O -0.539 6.539 12 C -0.136 4.136 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.368 0.632 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 24.047 1.462 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.354 5.354 3 C -0.035 4.035 4 C 0.061 3.939 5 H 0.121 0.879 6 O -0.356 6.356 7 C -0.212 4.212 8 C -0.208 4.208 9 C -0.203 4.203 10 C 0.303 3.697 11 O -0.415 6.415 12 C -0.176 4.176 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.215 0.785 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.424 23.421 1.840 23.497 hybrid contribution 0.242 -0.290 -0.442 0.581 sum -0.182 23.131 1.398 23.174 Atomic orbital electron populations 1.21788 0.79284 1.03654 1.01312 1.47839 1.07057 1.05485 1.74982 1.22030 0.98837 0.85887 0.96730 1.21956 0.84630 0.94152 0.93165 0.87939 1.86668 1.28896 1.63164 1.56841 1.22987 0.99270 0.99905 0.99074 1.22982 0.90981 1.03202 1.03671 1.22858 1.02979 1.00092 0.94362 1.21310 0.88268 0.85589 0.74516 1.90658 1.14295 1.87403 1.49134 1.21861 1.00333 0.91871 1.03532 1.21453 0.96771 0.93480 1.01605 1.19133 0.95425 0.90023 0.97099 1.21322 0.93292 0.90955 1.49909 0.92537 1.25025 0.95124 0.98985 0.95435 1.69975 1.12495 1.19927 1.51369 0.86539 0.81616 0.82401 0.77497 1.19683 1.21051 1.21058 0.92973 0.90480 0.91158 0.90672 0.88962 0.78539 0.87664 0.88340 0.88617 0.88862 0.88372 0.89355 0.89469 0.92764 0.92776 0.96608 0.96627 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 9.98 59.85 0.60 1.38 16 2 N -0.62 -7.85 2.80 -181.58 -0.51 -8.36 16 3 C 0.09 0.94 5.08 -4.04 -0.02 0.92 16 4 C 0.12 1.25 3.43 -26.73 -0.09 1.16 16 5 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 6 O -0.55 -5.43 11.97 -35.23 -0.42 -5.86 16 7 C -0.19 -1.61 5.36 -90.62 -0.49 -2.09 16 8 C -0.17 -1.48 10.18 -26.69 -0.27 -1.75 16 9 C -0.17 -1.34 10.16 -26.69 -0.27 -1.61 16 10 C 0.51 8.69 7.67 -10.99 -0.08 8.61 16 11 O -0.54 -11.00 15.56 5.56 0.09 -10.91 16 12 C -0.14 -2.37 4.25 -27.88 -0.12 -2.49 16 13 C -0.09 -2.12 4.44 -26.73 -0.12 -2.24 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 16 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 19 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 25 H 0.07 0.51 6.88 -51.93 -0.36 0.15 16 26 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 27 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 28 H 0.37 2.16 8.79 45.56 0.40 2.56 16 29 H 0.11 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.43 7.40 -51.93 -0.38 1.04 16 35 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -34.32 332.86 -7.60 -41.91 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.07 Total: -0.68 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.41 Total: -11.71 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.23 Total: -35.01 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.34 Total: -16.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.32 -7.60 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594313884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.141 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds