Wall clock time and date at job start Mon Mar 30 2020 04:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99969 * 2 1 4 4 C 1.53001 * 109.46900 * 90.00221 * 3 2 1 5 5 H 1.08999 * 109.47164 * 60.00014 * 4 3 2 6 6 O 1.42903 * 109.47171 * 299.99748 * 4 3 2 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 3 2 8 8 C 1.53003 * 117.49796 * 248.74870 * 7 4 3 9 9 C 1.52999 * 117.50160 * 180.08544 * 7 4 3 10 10 C 1.34777 * 120.00156 * 180.02562 * 2 1 3 11 11 O 1.21278 * 120.00006 * 179.97438 * 10 2 1 12 12 C 1.50696 * 119.99953 * 0.02562 * 10 2 1 13 13 C 1.53005 * 109.47199 * 179.97438 * 12 10 2 14 14 C 1.52997 * 109.46963 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46857 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99853 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00164 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99449 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47340 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46903 * 120.00327 * 19 17 15 22 22 H 1.48497 * 109.47158 * 240.00056 * 19 17 15 23 23 H 1.08999 * 109.47279 * 89.99778 * 1 2 3 24 24 H 1.09004 * 109.47039 * 209.99535 * 1 2 3 25 25 H 1.08997 * 109.47422 * 329.99508 * 1 2 3 26 26 H 1.08999 * 109.47200 * 330.00257 * 3 2 1 27 27 H 1.08997 * 109.47487 * 210.00311 * 3 2 1 28 28 H 0.96700 * 114.00311 * 300.00378 * 6 4 3 29 29 H 1.09002 * 115.54826 * 34.41110 * 7 4 3 30 30 H 1.09000 * 117.49626 * 359.97438 * 8 7 4 31 31 H 1.09000 * 117.49901 * 145.01813 * 8 7 4 32 32 H 1.08998 * 117.50055 * 214.97770 * 9 7 4 33 33 H 1.09001 * 117.49592 * 359.97370 * 9 7 4 34 34 H 1.08996 * 109.47280 * 299.99578 * 12 10 2 35 35 H 1.09003 * 109.47429 * 60.00077 * 12 10 2 36 36 H 1.08996 * 109.46911 * 300.00111 * 13 12 10 37 37 H 1.08996 * 109.46908 * 60.00102 * 13 12 10 38 38 H 1.08996 * 109.47577 * 299.99922 * 14 13 12 39 39 H 1.09003 * 109.47368 * 60.00565 * 14 13 12 40 40 H 0.97006 * 119.99816 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0416 0.9506 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2169 3.0357 1.4427 8 6 4.6657 3.0156 1.9344 9 6 3.5719 3.6464 2.7998 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3855 -2.4723 -0.0017 13 6 2.3797 -3.6352 -0.0027 14 6 1.6147 -4.9602 -0.0033 15 6 2.5941 -6.1056 -0.0049 16 1 3.6559 -5.9082 -0.0051 17 6 2.1345 -7.4056 -0.0051 18 7 0.8416 -7.6459 -0.0044 19 14 3.3485 -8.8254 -0.0065 20 1 4.7343 -8.2918 -0.0065 21 1 3.1388 -9.6570 1.2058 22 1 3.1373 -9.6560 -1.2191 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6084 2.0284 -0.5138 27 1 3.1499 1.1385 -0.5139 28 1 0.6267 2.5439 1.7127 29 1 2.9703 3.7207 0.6315 30 1 5.0740 2.0582 2.2582 31 1 5.3720 3.6877 1.4470 32 1 3.5591 4.7333 2.8814 33 1 3.2603 3.1042 3.6926 34 1 0.7585 -2.5307 0.8880 35 1 0.7591 -2.5295 -0.8920 36 1 3.0064 -3.5766 -0.8926 37 1 3.0063 -3.5782 0.8873 38 1 0.9884 -5.0185 0.8868 39 1 0.9878 -5.0175 -0.8931 40 1 0.5182 -8.5605 -0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594313884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:05 Heat of formation + Delta-G solvation = -103.536490 kcal Electronic energy + Delta-G solvation = -18872.894903 eV Core-core repulsion = 15879.927684 eV Total energy + Delta-G solvation = -2992.967218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11358 -39.37922 -36.85781 -36.14636 -35.88409 -34.05979 -31.19262 -29.44591 -27.39647 -26.11866 -24.35798 -23.25196 -22.06291 -21.87047 -20.13006 -18.53421 -18.00734 -17.51933 -17.25644 -17.06924 -16.49837 -16.23778 -15.88166 -15.19663 -14.81087 -14.59078 -14.13984 -14.02410 -13.76472 -13.65407 -13.26909 -13.12138 -12.71623 -12.65374 -12.49864 -12.46016 -12.30947 -12.12922 -11.58055 -11.52476 -11.47160 -11.27611 -11.22279 -11.10605 -10.68600 -10.55677 -9.53366 -8.21215 -6.31298 1.38824 1.39035 1.53150 1.61158 2.02822 2.41170 2.76052 3.11584 3.50496 3.57249 3.70890 3.91029 4.01592 4.12350 4.17967 4.20348 4.24735 4.37630 4.41866 4.68703 4.74006 4.75989 4.80011 4.86352 4.94930 4.99725 5.04492 5.09002 5.17213 5.20286 5.25962 5.51734 5.59138 5.73451 5.84999 6.25286 6.35353 6.83862 6.87828 7.18519 7.37362 8.90636 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.035255 B = 0.003541 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.027505 B = 7906.206757 C = 8353.882082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.087 3.913 4 C 0.130 3.870 5 H 0.059 0.941 6 O -0.563 6.563 7 C -0.186 4.186 8 C -0.185 4.185 9 C -0.160 4.160 10 C 0.509 3.491 11 O -0.585 6.585 12 C -0.128 4.128 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.548 4.548 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.274 1.274 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.389 0.611 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.000 1.000 39 H 0.002 0.998 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 25.651 1.003 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.341 5.341 3 C -0.035 4.035 4 C 0.069 3.931 5 H 0.078 0.922 6 O -0.370 6.370 7 C -0.205 4.205 8 C -0.222 4.222 9 C -0.197 4.197 10 C 0.298 3.702 11 O -0.466 6.466 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.586 4.586 16 H 0.068 0.932 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.238 0.762 29 H 0.150 0.850 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.290 25.073 1.379 25.144 hybrid contribution 0.414 -0.745 -0.276 0.896 sum -0.876 24.329 1.103 24.369 Atomic orbital electron populations 1.22090 0.76866 1.04893 1.02970 1.47857 1.08577 1.04932 1.72750 1.22221 0.98620 0.85616 0.97075 1.21638 0.84873 0.94238 0.92303 0.92237 1.86633 1.28919 1.64240 1.57235 1.22983 0.98333 0.99120 1.00037 1.23022 0.91758 1.02766 1.04672 1.22885 1.02093 1.01045 0.93665 1.21126 0.87633 0.86665 0.74727 1.90640 1.16075 1.88115 1.51744 1.21680 0.99231 0.90639 1.05156 1.21164 0.97048 0.93691 1.00087 1.19008 0.94878 0.91605 0.95495 1.21716 0.93578 0.92552 1.50754 0.93154 1.25919 0.97148 1.01809 0.94631 1.70074 1.14274 1.20987 1.51577 0.85429 0.79061 0.78676 0.78076 1.19279 1.20016 1.19912 0.91021 0.91013 0.88297 0.86343 0.90947 0.76168 0.84978 0.90513 0.87090 0.86763 0.89829 0.87985 0.87548 0.94088 0.94467 0.98187 0.97964 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.98 127.77 1.28 2.43 16 2 N -0.61 -14.49 2.80 -846.78 -2.37 -16.86 16 3 C 0.09 1.68 5.08 86.38 0.44 2.12 16 4 C 0.13 2.56 3.43 30.60 0.11 2.66 16 5 H 0.06 1.70 7.90 -2.39 -0.02 1.68 16 6 O -0.56 -9.86 11.97 -148.98 -1.78 -11.64 16 7 C -0.19 -2.74 5.36 -10.79 -0.06 -2.80 16 8 C -0.19 -3.11 10.18 30.62 0.31 -2.80 16 9 C -0.16 -2.36 10.16 30.62 0.31 -2.04 16 10 C 0.51 17.29 7.67 87.66 0.67 17.96 16 11 O -0.59 -24.79 15.56 -3.02 -0.05 -24.84 16 12 C -0.13 -4.44 4.25 29.85 0.13 -4.31 16 13 C -0.08 -3.77 4.44 30.59 0.14 -3.64 16 14 C 0.03 1.48 4.97 29.85 0.15 1.63 16 15 C -0.55 -32.98 9.11 25.60 0.23 -32.75 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 19 Si 0.96 45.87 29.54 68.60 2.03 47.89 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 1.25 6.44 -2.38 -0.02 1.23 16 25 H 0.10 1.02 6.88 -2.39 -0.02 1.01 16 26 H 0.12 1.28 8.07 -2.39 -0.02 1.26 16 27 H 0.07 1.73 7.42 -2.39 -0.02 1.72 16 28 H 0.39 3.10 8.79 -74.06 -0.65 2.44 16 29 H 0.13 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 3.26 7.40 -2.39 -0.02 3.24 16 35 H 0.11 3.28 8.11 -2.39 -0.02 3.26 16 36 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -76.39 332.86 2.64 -73.76 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.36 Total: 9.37 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.16 Total: -20.90 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -2.08 Total: -73.64 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.83 Total: -36.48 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.39 2.64 -73.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594313884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.781 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds