Wall clock time and date at job start Mon Mar 30 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 O 1.42900 * 112.84986 * 53.79748 * 4 3 2 6 6 C 1.53782 * 113.61133 * 282.49226 * 4 3 2 7 7 C 1.53777 * 87.07999 * 220.01847 * 6 4 3 8 8 C 1.53774 * 87.08186 * 25.43378 * 7 6 4 9 9 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 10 10 O 1.21283 * 120.00463 * 179.97438 * 9 2 1 11 11 C 1.50700 * 119.99675 * 359.72090 * 9 2 1 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 2 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00116 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00201 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46991 * 59.99818 * 18 16 14 20 20 H 1.48498 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47240 * 300.00255 * 18 16 14 22 22 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 23 23 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 24 24 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 25 25 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 26 26 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 27 27 H 0.96699 * 113.99671 * 309.67223 * 5 4 3 28 28 H 1.08997 * 113.61445 * 334.57100 * 6 4 3 29 29 H 1.09003 * 113.61042 * 105.46807 * 6 4 3 30 30 H 1.09000 * 113.61394 * 270.88263 * 7 6 4 31 31 H 1.09000 * 113.61403 * 139.98450 * 7 6 4 32 32 H 1.09001 * 113.61481 * 220.01365 * 8 7 6 33 33 H 1.09000 * 113.61466 * 89.11565 * 8 7 6 34 34 H 1.09009 * 109.47352 * 300.27556 * 11 9 2 35 35 H 1.08998 * 109.47585 * 60.27844 * 11 9 2 36 36 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 37 37 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 39 39 H 1.09001 * 109.47109 * 60.00906 * 13 12 11 40 40 H 0.97000 * 120.00572 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 8 1.2579 1.7670 -2.2249 6 6 3.6027 0.9516 -2.1250 7 6 4.0130 2.2950 -2.7509 8 6 3.3231 2.9730 -1.5555 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 0.0053 12 6 2.3797 -3.6352 0.0104 13 6 1.6147 -4.9602 0.0169 14 6 2.5940 -6.1056 0.0213 15 1 3.6558 -5.9083 0.0201 16 6 2.1345 -7.4055 0.0269 17 7 0.8415 -7.6459 0.0280 18 14 3.3484 -8.8253 0.0331 19 1 4.2021 -8.7413 1.2453 20 1 2.6059 -10.1114 0.0381 21 1 4.2022 -8.7519 -1.1797 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1500 1.1384 0.5137 27 1 0.7177 0.9664 -2.1763 28 1 4.3380 0.5528 -1.4261 29 1 3.2672 0.2143 -2.8544 30 1 3.5292 2.4973 -3.7065 31 1 5.0912 2.4522 -2.7795 32 1 2.7620 3.8677 -1.8251 33 1 3.9819 3.1269 -0.7009 34 1 0.7588 -2.5261 0.8956 35 1 0.7587 -2.5340 -0.8844 36 1 3.0064 -3.5813 -0.8798 37 1 3.0064 -3.5735 0.9001 38 1 0.9884 -5.0138 0.9073 39 1 0.9878 -5.0222 -0.8727 40 1 0.5182 -8.5604 0.0315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594340247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:49 Heat of formation + Delta-G solvation = -79.244815 kcal Electronic energy + Delta-G solvation = -19358.069294 eV Core-core repulsion = 16366.155442 eV Total energy + Delta-G solvation = -2991.913852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.47414 -38.87111 -35.51330 -34.60364 -34.22920 -32.07576 -29.45939 -27.65715 -26.35312 -25.70994 -24.01709 -22.68653 -20.29496 -19.83806 -18.94381 -17.03808 -16.79359 -16.37713 -15.90410 -15.78423 -15.02052 -14.92494 -14.42914 -13.81785 -13.58024 -13.18851 -13.11324 -12.77950 -12.50072 -12.44875 -12.19452 -11.83315 -11.58411 -11.42822 -11.30071 -10.97083 -10.78985 -10.60626 -10.58289 -10.53732 -9.93857 -9.68029 -9.66302 -9.27099 -9.03094 -8.60754 -8.32019 -5.97855 -3.99374 2.84030 2.95880 3.36447 3.39914 3.43723 3.82276 4.40011 4.48934 4.57096 4.67721 4.72219 4.83496 4.98006 5.19654 5.27532 5.35212 5.38221 5.50124 5.53406 5.61228 5.66935 5.69126 5.72540 5.77533 5.98761 6.10105 6.21803 6.26733 6.44513 6.71142 6.91811 7.14732 7.33687 7.45396 7.69978 7.82869 8.02539 8.36036 8.46567 9.07418 9.64609 11.13614 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.003922 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.475174 B = 7136.995378 C = 7542.359580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.630 5.630 3 C 0.098 3.902 4 C 0.090 3.910 5 O -0.543 6.543 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.122 4.122 9 C 0.513 3.487 10 O -0.529 6.529 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.376 0.624 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 20.971 -1.754 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.365 5.365 3 C -0.025 4.025 4 C 0.048 3.952 5 O -0.350 6.350 6 C -0.194 4.194 7 C -0.175 4.175 8 C -0.160 4.160 9 C 0.303 3.697 10 O -0.405 6.405 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.225 0.775 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.375 21.398 -1.886 21.484 hybrid contribution 0.148 -1.377 0.164 1.395 sum -0.227 20.020 -1.722 20.095 Atomic orbital electron populations 1.21937 0.79454 1.03432 1.02492 1.48025 1.06959 1.05887 1.75670 1.22010 0.98861 0.85365 0.96259 1.22701 0.84982 0.97536 0.90007 1.86428 1.34902 1.43247 1.70426 1.23585 0.98675 0.96619 1.00507 1.22774 1.00220 0.96640 0.97824 1.22951 0.97349 0.96338 0.99392 1.21318 0.88363 0.85445 0.74594 1.90651 1.14177 1.87232 1.48403 1.21878 1.00364 0.91915 1.03509 1.21454 0.96749 0.93451 1.01638 1.19121 0.95409 0.90003 0.97071 1.21233 0.93203 0.90972 1.50308 0.92653 1.25012 0.95120 0.98958 0.95355 1.69947 1.12523 1.20176 1.51108 0.86656 0.81196 0.81459 0.78690 1.20225 1.21319 1.20227 0.92317 0.90910 0.90155 0.90283 0.88844 0.77513 0.88250 0.91474 0.90124 0.91424 0.90691 0.88826 0.89416 0.89447 0.92735 0.92749 0.96645 0.96652 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 9.25 59.84 0.55 1.13 16 2 N -0.63 -7.28 2.55 -181.57 -0.46 -7.75 16 3 C 0.10 1.05 5.05 -4.04 -0.02 1.03 16 4 C 0.09 0.98 1.53 -89.80 -0.14 0.84 16 5 O -0.54 -6.07 13.09 -35.23 -0.46 -6.53 16 6 C -0.16 -1.93 6.64 -25.92 -0.17 -2.10 16 7 C -0.14 -1.41 8.02 -25.92 -0.21 -1.62 16 8 C -0.12 -1.15 7.47 -25.92 -0.19 -1.34 16 9 C 0.51 7.96 7.49 -10.98 -0.08 7.87 16 10 O -0.53 -9.96 13.94 5.55 0.08 -9.88 16 11 C -0.14 -2.22 4.25 -27.88 -0.12 -2.33 16 12 C -0.09 -2.03 4.44 -26.73 -0.12 -2.15 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.47 6.86 -51.93 -0.36 0.12 16 24 H 0.08 0.63 6.45 -51.93 -0.33 0.30 16 25 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.09 1.12 7.33 -51.93 -0.38 0.74 16 27 H 0.38 3.55 6.64 45.56 0.30 3.85 16 28 H 0.10 1.38 7.08 -51.93 -0.37 1.02 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.09 1.31 8.11 -51.92 -0.42 0.89 16 35 H 0.09 1.28 7.41 -51.93 -0.38 0.89 16 36 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -32.83 322.69 -7.44 -40.27 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.12 Total: 0.39 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.05 Total: -12.04 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.27 Total: -34.04 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.38 Total: -16.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.83 -7.44 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594340247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds