Wall clock time and date at job start Mon Mar 30 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00566 * 2 1 4 4 C 1.52995 * 109.47112 * 268.50870 * 3 2 1 5 5 C 1.53007 * 115.55041 * 185.15506 * 4 3 2 6 6 O 1.42900 * 109.46823 * 299.21265 * 5 4 3 7 7 C 1.52998 * 117.50328 * 39.48099 * 4 3 2 8 8 C 1.52998 * 117.49857 * 330.82221 * 4 3 2 9 9 C 1.34785 * 119.99972 * 179.97438 * 2 1 3 10 10 O 1.21274 * 120.00226 * 180.27773 * 9 2 1 11 11 C 1.50700 * 119.99466 * 0.02562 * 9 2 1 12 12 C 1.53008 * 109.46913 * 180.02562 * 11 9 2 13 13 C 1.52997 * 109.47251 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.47182 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00168 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00087 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99992 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47273 * 59.99942 * 18 16 14 20 20 H 1.48503 * 109.46976 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47150 * 299.99807 * 18 16 14 22 22 H 1.08996 * 109.47412 * 270.00346 * 1 2 3 23 23 H 1.09000 * 109.47035 * 30.00064 * 1 2 3 24 24 H 1.09003 * 109.47524 * 150.00008 * 1 2 3 25 25 H 1.09002 * 109.46534 * 28.50530 * 3 2 1 26 26 H 1.08995 * 109.47230 * 148.50107 * 3 2 1 27 27 H 1.09001 * 109.46706 * 59.21245 * 5 4 3 28 28 H 1.08994 * 109.47290 * 179.21123 * 5 4 3 29 29 H 0.96701 * 113.99835 * 179.97438 * 6 5 4 30 30 H 1.09003 * 117.49743 * 0.02562 * 7 4 3 31 31 H 1.08998 * 117.49794 * 145.01879 * 7 4 3 32 32 H 1.09005 * 117.50066 * 214.98330 * 8 4 3 33 33 H 1.08996 * 117.49745 * 0.02562 * 8 4 3 34 34 H 1.08999 * 109.47528 * 299.99943 * 11 9 2 35 35 H 1.09001 * 109.47275 * 60.00284 * 11 9 2 36 36 H 1.08999 * 109.46520 * 299.99962 * 12 11 9 37 37 H 1.08996 * 109.47284 * 59.99745 * 12 11 9 38 38 H 1.08999 * 109.47156 * 299.99898 * 13 12 11 39 39 H 1.08996 * 109.47389 * 59.99559 * 13 12 11 40 40 H 0.97000 * 120.00403 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4851 1.6915 -1.4420 5 6 3.3544 2.9403 -1.6026 6 8 2.7018 4.0564 -0.9939 7 6 1.3850 1.4584 -2.4794 8 6 2.6409 0.5834 -2.4854 9 6 2.1389 -1.1673 0.0005 10 8 3.3516 -1.1673 0.0056 11 6 1.3853 -2.4723 0.0005 12 6 2.3795 -3.6353 0.0018 13 6 1.6145 -4.9603 0.0012 14 6 2.5937 -6.1058 0.0031 15 1 3.6555 -5.9085 0.0042 16 6 2.1340 -7.4057 0.0034 17 7 0.8411 -7.6460 0.0016 18 14 3.3478 -8.8256 0.0051 19 1 4.2007 -8.7463 1.2181 20 1 2.6053 -10.1116 0.0045 21 1 4.2025 -8.7476 -1.2069 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 1.5971 2.0348 0.4905 26 1 3.1380 1.1451 0.5369 27 1 4.3185 2.7763 -1.1211 28 1 3.5074 3.1427 -2.6626 29 1 3.1973 4.8844 -1.0575 30 1 0.4561 1.0041 -2.1344 31 1 1.2807 2.1946 -3.2764 32 1 3.3624 0.7442 -3.2865 33 1 2.5381 -0.4468 -2.1446 34 1 0.7582 -2.5299 0.8903 35 1 0.7590 -2.5302 -0.8897 36 1 3.0068 -3.5780 -0.8877 37 1 3.0055 -3.5772 0.8922 38 1 0.9868 -5.0179 0.8905 39 1 0.9887 -5.0182 -0.8894 40 1 0.5177 -8.5605 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594345843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:43 Heat of formation + Delta-G solvation = -94.350235 kcal Electronic energy + Delta-G solvation = -19193.143398 eV Core-core repulsion = 16200.574526 eV Total energy + Delta-G solvation = -2992.568872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41655 -39.18537 -37.00224 -36.12179 -35.68629 -34.00981 -30.42922 -29.11535 -27.70876 -27.00382 -25.22832 -23.27744 -22.24507 -20.60613 -19.73326 -18.50620 -18.24905 -17.80647 -17.71829 -16.89382 -16.46330 -16.29030 -15.46222 -15.22447 -14.65882 -14.35583 -14.19691 -13.96719 -13.79135 -13.75441 -13.61311 -13.13111 -13.10637 -12.62848 -12.50148 -12.37525 -12.33086 -12.18778 -11.56498 -11.46508 -11.42014 -11.25951 -11.04691 -10.68733 -10.63156 -10.54446 -9.65745 -8.20396 -6.30580 1.39256 1.42307 1.50405 1.63928 2.03059 2.41595 2.66870 3.12417 3.36877 3.67710 3.75765 3.88961 4.01942 4.14862 4.19943 4.21202 4.30707 4.48639 4.53788 4.63260 4.68466 4.75092 4.81279 4.89917 4.91677 4.96092 5.03110 5.08092 5.09126 5.18429 5.22201 5.52268 5.59124 5.74457 5.85779 6.26144 6.37301 6.84426 6.91897 7.20438 7.38006 8.91008 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.042941 B = 0.003697 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.902369 B = 7572.056766 C = 7786.669046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.614 5.614 3 C 0.157 3.843 4 C -0.148 4.148 5 C 0.122 3.878 6 O -0.582 6.582 7 C -0.153 4.153 8 C -0.175 4.175 9 C 0.514 3.486 10 O -0.577 6.577 11 C -0.129 4.129 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.550 4.550 15 H 0.051 0.949 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.398 0.602 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.000 1.000 39 H 0.001 0.999 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 23.823 -3.408 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.347 5.347 3 C 0.034 3.966 4 C -0.149 4.149 5 C 0.044 3.956 6 O -0.391 6.391 7 C -0.190 4.190 8 C -0.212 4.212 9 C 0.304 3.696 10 O -0.456 6.456 11 C -0.169 4.169 12 C -0.119 4.119 13 C -0.009 4.009 14 C -0.588 4.588 15 H 0.069 0.931 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.248 0.752 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.399 23.251 -3.264 23.520 hybrid contribution 1.006 -0.684 -0.102 1.221 sum -0.393 22.567 -3.366 22.820 Atomic orbital electron populations 1.22177 0.77260 1.04644 1.03446 1.47952 1.08363 1.05129 1.73246 1.20769 0.97174 0.84361 0.94266 1.21902 1.03573 0.96871 0.92585 1.21457 0.93194 0.83940 0.97030 1.86417 1.50904 1.20560 1.81213 1.23171 0.93215 1.02032 1.00583 1.22942 1.01852 0.95559 1.00850 1.21015 0.87680 0.86284 0.74590 1.90656 1.15898 1.87951 1.51125 1.21710 0.99288 0.90651 1.05210 1.21153 0.97003 0.93574 1.00142 1.18995 0.94850 0.91615 0.95459 1.21665 0.93612 0.92558 1.50934 0.93100 1.25904 0.97109 1.01778 0.94625 1.70053 1.14304 1.21087 1.51459 0.85558 0.78842 0.77933 0.79071 1.19431 1.20283 1.19411 0.91027 0.88832 0.90027 0.88096 0.91954 0.93150 0.92058 0.75178 0.87863 0.87549 0.88376 0.90899 0.87777 0.87710 0.94194 0.94254 0.98148 0.98090 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 9.15 127.77 1.17 2.28 16 2 N -0.61 -15.10 2.14 -846.78 -1.81 -16.91 16 3 C 0.16 3.65 5.45 86.38 0.47 4.12 16 4 C -0.15 -3.13 2.39 -52.18 -0.12 -3.26 16 5 C 0.12 2.03 6.89 71.98 0.50 2.52 16 6 O -0.58 -8.72 13.52 -148.98 -2.01 -10.74 16 7 C -0.15 -2.89 9.60 30.62 0.29 -2.59 16 8 C -0.17 -4.23 9.43 30.62 0.29 -3.94 16 9 C 0.51 17.05 5.68 87.66 0.50 17.55 16 10 O -0.58 -23.83 15.03 -3.01 -0.05 -23.88 16 11 C -0.13 -4.37 4.25 29.85 0.13 -4.24 16 12 C -0.08 -3.64 4.44 30.60 0.14 -3.50 16 13 C 0.03 1.50 4.97 29.85 0.15 1.65 16 14 C -0.55 -32.77 9.11 25.60 0.23 -32.54 16 15 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 18 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 1.19 6.55 -2.39 -0.02 1.17 16 24 H 0.08 1.33 6.44 -2.39 -0.02 1.31 16 25 H 0.10 1.98 8.06 -2.39 -0.02 1.96 16 26 H 0.06 1.73 7.46 -2.39 -0.02 1.71 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.11 -2.39 -0.02 0.83 16 29 H 0.40 2.21 9.12 -74.06 -0.68 1.54 16 30 H 0.10 1.81 5.25 -2.39 -0.01 1.80 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.07 2.23 5.38 -2.39 -0.01 2.22 16 34 H 0.10 3.18 8.11 -2.39 -0.02 3.16 16 35 H 0.10 3.17 7.40 -2.39 -0.02 3.15 16 36 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -74.34 324.65 2.99 -71.35 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.35 Total: 10.40 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.20 Total: -21.26 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.52 Total: -73.42 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -2.06 Total: -34.62 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.34 2.99 -71.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594345843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.002 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds