Wall clock time and date at job start Mon Mar 30 2020 04:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.47072 * 2 1 4 4 C 1.42897 * 113.99919 * 180.02562 * 3 2 1 5 5 C 1.52998 * 113.28404 * 46.93067 * 4 3 2 6 6 C 1.53495 * 114.20270 * 180.02562 * 4 3 2 7 7 N 1.47069 * 87.98587 * 87.51937 * 6 4 3 8 8 C 1.34784 * 136.05474 * 207.08488 * 7 6 4 9 9 O 1.21274 * 119.99897 * 359.72586 * 8 7 6 10 10 C 1.50695 * 119.99635 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47542 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47478 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99925 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00389 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47502 * 89.99807 * 17 15 13 19 19 H 1.48503 * 109.46936 * 210.00163 * 17 15 13 20 20 H 1.48507 * 109.47078 * 329.99889 * 17 15 13 21 21 C 1.47068 * 87.88651 * 27.34115 * 7 6 4 22 22 H 1.09002 * 109.46759 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47164 * 299.99578 * 1 2 3 24 24 H 1.08997 * 109.47277 * 60.00377 * 1 2 3 25 25 H 1.08996 * 109.47164 * 240.00422 * 2 1 3 26 26 H 1.08997 * 109.47277 * 119.99623 * 2 1 3 27 27 H 1.08998 * 109.46664 * 193.06379 * 5 4 3 28 28 H 1.08989 * 109.47262 * 313.06696 * 5 4 3 29 29 H 1.08993 * 109.46803 * 73.07184 * 5 4 3 30 30 H 1.08994 * 113.47293 * 332.73773 * 6 4 3 31 31 H 1.09000 * 113.46642 * 202.29239 * 6 4 3 32 32 H 1.09005 * 109.47403 * 300.00056 * 10 8 7 33 33 H 1.09002 * 109.47422 * 60.00295 * 10 8 7 34 34 H 1.08997 * 109.47244 * 300.00535 * 11 10 8 35 35 H 1.09002 * 109.46787 * 59.99910 * 11 10 8 36 36 H 1.08997 * 109.47365 * 300.00556 * 12 11 10 37 37 H 1.09004 * 109.46747 * 59.99765 * 12 11 10 38 38 H 0.96998 * 120.00132 * 180.02562 * 16 15 13 39 39 H 1.08999 * 113.46642 * 87.43975 * 21 7 6 40 40 H 1.09001 * 113.46436 * 217.87945 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 4.1091 0.5514 -1.0277 6 6 3.9476 2.9055 0.0000 7 7 3.8710 2.8774 1.4685 8 6 3.6988 3.7862 2.4488 9 8 3.5660 4.9593 2.1716 10 6 3.6770 3.3451 3.8896 11 6 3.4695 4.5627 4.7926 12 6 3.4467 4.1150 6.2554 13 6 3.2430 5.3144 7.1448 14 1 3.1396 6.2976 6.7101 15 6 3.1885 5.1564 8.5134 16 7 3.3138 3.9590 9.0427 17 14 2.9352 6.6430 9.6158 18 1 1.4818 6.8572 9.8320 19 1 3.6010 6.4093 10.9225 20 1 3.5218 7.8444 8.9693 21 6 4.0714 1.4222 1.3967 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.1791 0.5084 -0.8242 28 1 3.6860 -0.4509 -0.9614 29 1 3.9455 0.9494 -2.0290 30 1 3.2568 3.6138 -0.4572 31 1 4.9647 3.0030 -0.3796 32 1 2.8620 2.6372 4.0407 33 1 4.6245 2.8667 4.1376 34 1 4.2847 5.2703 4.6415 35 1 2.5222 5.0416 4.5448 36 1 2.6313 3.4076 6.4062 37 1 4.3938 3.6358 6.5035 38 1 3.2751 3.8479 10.0055 39 1 5.1211 1.1287 1.3852 40 1 3.4859 0.8668 2.1294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594365596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:31 Heat of formation + Delta-G solvation = -83.007832 kcal Electronic energy + Delta-G solvation = -18897.698443 eV Core-core repulsion = 15905.621414 eV Total energy + Delta-G solvation = -2992.077029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78516 -39.77051 -37.50859 -36.14928 -34.06964 -32.55809 -31.40274 -29.99708 -27.83064 -27.16644 -25.41982 -23.72371 -22.18335 -21.28645 -20.11759 -18.55175 -18.00611 -17.39702 -17.12364 -16.82885 -16.49213 -16.35365 -15.68955 -15.60294 -14.68099 -14.45869 -14.29842 -14.02342 -13.74510 -13.24402 -13.22423 -13.13795 -13.07048 -12.83074 -12.65947 -12.64465 -12.48461 -12.41849 -12.13532 -11.62103 -11.50911 -11.31191 -11.29147 -10.86942 -10.56288 -10.43435 -9.77365 -8.21821 -6.32225 1.38574 1.40142 1.51770 1.56079 1.79130 2.40642 2.47699 3.10896 3.16915 3.50000 3.85947 4.03631 4.12172 4.16623 4.19813 4.36337 4.39855 4.45726 4.49839 4.53500 4.58341 4.65568 4.79002 4.88808 4.92154 4.95103 4.99552 5.03901 5.07185 5.14543 5.26164 5.31164 5.50307 5.70414 5.82900 6.24927 6.30880 6.63474 6.82201 7.09472 7.36401 8.89914 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.003626 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.851313 B = 7719.165519 C = 8096.223856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.047 3.953 3 O -0.385 6.385 4 C 0.083 3.917 5 C -0.159 4.159 6 C 0.105 3.895 7 N -0.652 5.652 8 C 0.541 3.459 9 O -0.590 6.590 10 C -0.119 4.119 11 C -0.082 4.082 12 C 0.028 3.972 13 C -0.550 4.550 14 H 0.051 0.949 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.268 1.268 21 C 0.075 3.925 22 H 0.094 0.906 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.000 1.000 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -14.375 -22.338 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.305 6.305 4 C 0.042 3.958 5 C -0.217 4.217 6 C -0.017 4.017 7 N -0.387 5.387 8 C 0.332 3.668 9 O -0.470 6.470 10 C -0.158 4.158 11 C -0.120 4.120 12 C -0.009 4.009 13 C -0.588 4.588 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.193 1.193 21 C -0.048 4.048 22 H 0.112 0.888 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.240 -13.535 -22.144 25.982 hybrid contribution -0.204 0.760 0.960 1.241 sum 1.036 -12.775 -21.184 24.760 Atomic orbital electron populations 1.21790 0.93769 1.03378 1.02142 1.22746 0.95536 0.82794 1.01748 1.87983 1.19290 1.28532 1.94716 1.22802 0.81985 0.95900 0.95107 1.22134 1.02118 0.99347 0.98074 1.23377 1.02498 0.95874 0.79968 1.49594 1.71245 1.10252 1.07614 1.20660 0.74582 0.84076 0.87447 1.90648 1.52527 1.19270 1.84578 1.21569 1.05036 1.00138 0.89102 1.21178 1.00115 0.95928 0.94774 1.19000 0.95564 0.95551 0.90795 1.21670 1.49897 0.94694 0.92498 0.93103 1.25916 0.94692 0.99105 0.99699 1.70065 1.51110 1.23579 1.12126 0.85470 0.78598 0.79236 0.77890 1.19694 1.20076 1.19286 1.24108 1.03337 0.79378 0.97945 0.88771 0.93688 0.92272 0.90400 0.92456 0.88515 0.89933 0.90443 0.91938 0.85496 0.88378 0.87518 0.93905 0.94356 0.98190 0.97875 0.92574 0.85419 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.67 6.01 71.98 0.43 1.10 16 3 O -0.39 -8.16 10.36 -148.98 -1.54 -9.71 16 4 C 0.08 1.31 1.49 -10.37 -0.02 1.30 16 5 C -0.16 -1.16 9.02 71.98 0.65 -0.51 16 6 C 0.10 2.19 8.04 83.18 0.67 2.86 16 7 N -0.65 -17.98 3.69 -858.11 -3.16 -21.14 16 8 C 0.54 20.22 8.08 87.65 0.71 20.93 16 9 O -0.59 -27.38 16.76 -3.01 -0.05 -27.43 16 10 C -0.12 -4.39 5.53 29.85 0.16 -4.23 16 11 C -0.08 -3.88 4.44 30.59 0.14 -3.75 16 12 C 0.03 1.55 4.97 29.85 0.15 1.70 16 13 C -0.55 -33.34 9.11 25.60 0.23 -33.10 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 15 C 0.00 0.23 5.46 84.65 0.46 0.70 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 C 0.07 1.28 7.86 83.27 0.65 1.93 16 22 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 23 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.71 6.36 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.35 7.90 -2.39 -0.02 0.33 16 28 H 0.08 0.43 6.12 -2.39 -0.01 0.41 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.13 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 33 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.04 2.10 8.10 -2.39 -0.02 2.08 16 35 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.00 0.16 8.14 -2.38 -0.02 0.15 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.13 1.36 7.94 -2.39 -0.02 1.34 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -79.00 333.47 3.52 -75.47 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 0.99 Total: 4.24 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.98 Total: -12.54 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.88 Total: -78.09 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.59 Total: -37.14 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.00 3.52 -75.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.534 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds