Wall clock time and date at job start Mon Mar 30 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47000 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.47001 * 305.00593 * 12 11 10 14 14 N 1.46901 * 109.46958 * 65.00220 * 12 11 10 15 15 C 1.50698 * 109.47286 * 185.00373 * 12 11 10 16 16 O 1.21279 * 119.99959 * 260.00054 * 15 12 11 17 17 N 1.34779 * 120.00151 * 80.00086 * 15 12 11 18 18 C 1.47082 * 120.88031 * 359.72154 * 17 15 12 19 19 C 1.52781 * 108.76396 * 231.12308 * 18 17 15 20 20 N 1.46900 * 109.42540 * 306.42438 * 19 18 17 21 21 C 1.46899 * 111.26828 * 62.96339 * 20 19 18 22 22 C 1.47074 * 120.88004 * 180.02562 * 17 15 12 23 23 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 25 25 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 26 26 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 27 27 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 28 28 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 29 29 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 30 30 H 1.00904 * 110.99764 * 296.04461 * 14 12 11 31 31 H 1.00900 * 111.00110 * 59.99850 * 14 12 11 32 32 H 1.09000 * 109.62481 * 350.88988 * 18 17 15 33 33 H 1.08992 * 109.62866 * 111.47200 * 18 17 15 34 34 H 1.09001 * 109.56673 * 186.36704 * 19 18 17 35 35 H 1.09000 * 109.35969 * 66.35800 * 19 18 17 36 36 H 1.00900 * 110.99803 * 187.11441 * 20 19 18 37 37 H 1.08992 * 109.49333 * 176.93336 * 21 20 19 38 38 H 1.09005 * 109.51292 * 56.87043 * 21 20 19 39 39 H 1.09001 * 109.62868 * 248.52803 * 22 17 15 40 40 H 1.09004 * 109.63289 * 9.10696 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1590 -6.0435 -0.8400 14 7 3.2377 -6.1412 1.2571 15 6 1.7254 -7.4517 -0.1215 16 8 1.5130 -8.1249 0.8647 17 7 1.2912 -7.8677 -1.3277 18 6 1.5327 -7.0638 -2.5354 19 6 0.2090 -6.8786 -3.2754 20 7 -0.4047 -8.1916 -3.5150 21 6 -0.7325 -8.8651 -2.2513 22 6 0.5576 -9.1344 -1.4701 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8903 26 1 2.8721 -3.6042 -0.8894 27 1 2.8721 -3.6043 0.8905 28 1 0.8541 -5.0446 0.8913 29 1 0.8535 -5.0451 -0.8886 30 1 3.7994 -5.3064 1.3330 31 1 2.6254 -6.2386 2.0532 32 1 1.9322 -6.0897 -2.2530 33 1 2.2416 -7.5797 -3.1829 34 1 0.3900 -6.3822 -4.2288 35 1 -0.4614 -6.2688 -2.6696 36 1 -1.2208 -8.1075 -4.1023 37 1 -1.2342 -9.8095 -2.4621 38 1 -1.3898 -8.2284 -1.6592 39 1 1.1708 -9.8536 -2.0132 40 1 0.3127 -9.5288 -0.4839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594425510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:50 Heat of formation + Delta-G solvation = -70.718168 kcal Electronic energy + Delta-G solvation = -19502.853699 eV Core-core repulsion = 16543.602342 eV Total energy + Delta-G solvation = -2959.251358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43051 -38.76018 -37.46639 -35.31993 -34.72595 -33.02546 -32.22992 -29.54341 -28.16475 -26.56283 -24.70645 -23.97095 -22.11865 -21.79886 -19.84443 -18.87542 -18.46815 -17.27029 -16.82177 -16.53649 -16.33316 -16.20240 -15.75925 -15.65399 -15.30418 -15.00215 -14.67553 -14.28942 -14.04885 -13.64600 -13.53228 -13.29819 -12.93454 -12.61303 -12.42752 -12.40751 -12.37922 -12.29172 -12.13660 -11.53309 -11.43622 -11.24798 -10.73527 -10.57212 -9.98689 -9.71247 -9.39298 -8.21013 -6.32106 1.40029 1.41078 1.50646 1.53899 1.87095 2.40615 3.12951 3.18651 3.38079 3.62546 3.90373 3.93093 3.97407 4.01730 4.21860 4.21917 4.33140 4.36238 4.49246 4.53386 4.70545 4.73052 4.81580 4.85452 4.96573 5.01443 5.15591 5.21539 5.42475 5.51377 5.71017 5.83993 5.87028 5.99672 6.22966 6.26965 6.42060 6.46166 6.85965 7.08109 7.38013 8.90931 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.004544 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.569470 B = 6159.975678 C = 6837.669999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.094 4.094 11 C -0.133 4.133 12 C 0.084 3.916 13 H 0.121 0.879 14 N -0.831 5.831 15 C 0.521 3.479 16 O -0.575 6.575 17 N -0.612 5.612 18 C 0.102 3.898 19 C 0.040 3.960 20 N -0.686 5.686 21 C 0.048 3.952 22 C 0.111 3.889 23 H 0.262 0.738 24 H -0.007 1.007 25 H -0.017 1.017 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.358 0.642 31 H 0.345 0.655 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.022 0.978 36 H 0.358 0.642 37 H 0.110 0.890 38 H 0.020 0.980 39 H 0.085 0.915 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -15.845 -8.163 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.173 4.173 12 C -0.031 4.031 13 H 0.139 0.861 14 N -0.364 5.364 15 C 0.309 3.691 16 O -0.454 6.454 17 N -0.346 5.346 18 C -0.020 4.020 19 C -0.090 4.090 20 N -0.318 5.318 21 C -0.082 4.082 22 C -0.011 4.011 23 H 0.071 0.929 24 H 0.011 0.989 25 H 0.001 0.999 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.040 0.960 36 H 0.177 0.823 37 H 0.128 0.872 38 H 0.039 0.961 39 H 0.103 0.897 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.440 -17.082 -7.996 19.018 hybrid contribution -1.505 2.433 0.731 2.953 sum 0.935 -14.650 -7.265 16.379 Atomic orbital electron populations 1.70108 1.07892 1.27646 1.51971 1.25977 0.95691 1.03402 0.94807 0.85421 0.79272 0.78869 0.77634 1.18279 1.20405 1.20783 1.21748 0.93696 0.92212 1.50084 0.91770 1.18996 0.94436 0.93290 0.94548 1.21435 0.97933 0.92271 1.01485 1.22247 0.98305 0.94673 1.02064 1.21396 0.95169 0.90145 0.96352 0.86140 1.58709 1.28130 1.46358 1.03176 1.20898 0.78463 0.87226 0.82485 1.90619 1.58609 1.58141 1.38001 1.48228 1.56094 1.23041 1.07242 1.22044 0.98161 0.96493 0.85329 1.22267 0.95116 0.90375 1.01206 1.60306 1.34704 1.20909 1.15920 1.22280 0.95355 1.00335 0.90270 1.21763 0.93149 0.85435 1.00779 0.92880 0.98888 0.99900 0.91452 0.92565 0.93641 0.91305 0.82654 0.84197 0.88606 0.88885 0.87182 0.96008 0.82257 0.87181 0.96148 0.89692 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.24 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.46 4.92 30.60 0.15 -3.31 16 11 C -0.13 -4.24 4.51 30.60 0.14 -4.10 16 12 C 0.08 2.33 2.35 44.17 0.10 2.44 16 13 H 0.12 2.84 6.88 -2.38 -0.02 2.83 16 14 N -0.83 -23.41 8.94 -171.79 -1.54 -24.94 16 15 C 0.52 15.75 6.96 87.66 0.61 16.36 16 16 O -0.57 -21.37 15.70 -3.03 -0.05 -21.42 16 17 N -0.61 -14.86 3.02 -818.91 -2.47 -17.33 16 18 C 0.10 1.95 5.93 86.20 0.51 2.46 16 19 C 0.04 0.71 6.68 86.23 0.58 1.29 16 20 N -0.69 -10.83 6.82 -513.92 -3.50 -14.34 16 21 C 0.05 0.82 6.69 86.37 0.58 1.40 16 22 C 0.11 2.37 6.60 86.34 0.57 2.94 16 23 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 2.00 6.87 -2.39 -0.02 1.99 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 2.13 6.91 -2.39 -0.02 2.12 16 30 H 0.36 9.11 7.55 -89.69 -0.68 8.43 16 31 H 0.34 10.33 8.58 -89.69 -0.77 9.56 16 32 H 0.10 1.84 4.84 -2.39 -0.01 1.83 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.36 4.36 8.90 -89.69 -0.80 3.56 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.02 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.92 7.06 -2.38 -0.02 1.90 16 Total: -1.00 -69.26 317.85 -2.35 -71.62 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -1.19 Total: 25.27 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.08 Total: -8.17 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -7.23 Total: -112.65 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -69.26 -2.35 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594425510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.901 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds