Wall clock time and date at job start Mon Mar 30 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99781 * 2 1 4 4 H 1.48498 * 109.47262 * 270.00214 * 3 2 1 5 5 H 1.48505 * 109.47050 * 30.00326 * 3 2 1 6 6 H 1.48506 * 109.47168 * 150.00195 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46893 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47024 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47622 * 305.00029 * 12 11 10 14 14 N 1.46908 * 109.47215 * 64.99961 * 12 11 10 15 15 C 1.50699 * 109.47215 * 184.99798 * 12 11 10 16 16 O 1.21276 * 120.00273 * 260.00205 * 15 12 11 17 17 N 1.34776 * 119.99843 * 79.99813 * 15 12 11 18 18 C 1.46900 * 120.49509 * 180.02562 * 17 15 12 19 19 C 1.53342 * 108.58311 * 126.15968 * 18 17 15 20 20 C 1.53228 * 108.81979 * 51.76962 * 19 18 17 21 21 C 1.53096 * 109.20019 * 302.30907 * 20 19 18 22 22 N 1.36896 * 120.49662 * 0.02562 * 17 15 12 23 23 H 0.96995 * 120.00194 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47249 * 60.00436 * 9 7 2 25 25 H 1.09001 * 109.47245 * 300.00245 * 9 7 2 26 26 H 1.08999 * 109.47064 * 60.00874 * 10 9 7 27 27 H 1.09001 * 109.47319 * 300.00151 * 10 9 7 28 28 H 1.08995 * 109.46881 * 59.99751 * 11 10 9 29 29 H 1.09001 * 109.47132 * 300.00106 * 11 10 9 30 30 H 1.00899 * 110.99346 * 59.99837 * 14 12 11 31 31 H 1.00896 * 110.99850 * 183.95152 * 14 12 11 32 32 H 1.09008 * 109.61951 * 245.88443 * 18 17 15 33 33 H 1.09000 * 109.61718 * 6.24460 * 18 17 15 34 34 H 1.09004 * 109.57480 * 291.97271 * 19 18 17 35 35 H 1.09001 * 109.58050 * 171.57333 * 19 18 17 36 36 H 1.08996 * 109.51942 * 182.38814 * 20 19 18 37 37 H 1.09002 * 109.51675 * 62.22299 * 20 19 18 38 38 H 1.09000 * 109.47478 * 179.71621 * 21 20 19 39 39 H 1.08997 * 109.47378 * 299.73100 * 21 20 19 40 40 H 1.00901 * 111.00199 * 112.78096 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 1 3.1594 -6.0431 -0.8418 14 7 3.2368 -6.1419 1.2553 15 6 1.7254 -7.4516 -0.1249 16 8 1.5123 -8.1253 0.8607 17 7 1.2919 -7.8669 -1.3316 18 6 0.5600 -9.1336 -1.4654 19 6 -0.7650 -8.8585 -2.1864 20 6 -0.4742 -8.0863 -3.4775 21 6 0.2660 -6.7911 -3.1336 22 7 1.5271 -7.1147 -2.4510 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8540 -5.0446 -0.8913 29 1 0.8534 -5.0451 0.8886 30 1 2.6239 -6.2397 2.0508 31 1 3.9445 -6.8610 1.2534 32 1 1.1533 -9.8395 -2.0467 33 1 0.3627 -9.5484 -0.4769 34 1 -1.4141 -8.2639 -1.5435 35 1 -1.2526 -9.8031 -2.4277 36 1 -1.4124 -7.8476 -3.9783 37 1 0.1454 -8.6962 -4.1349 38 1 0.4797 -6.2404 -4.0497 39 1 -0.3555 -6.1802 -2.4789 40 1 2.1660 -7.5846 -3.0747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594452231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:43 Heat of formation + Delta-G solvation = -30.627201 kcal Electronic energy + Delta-G solvation = -19535.325532 eV Core-core repulsion = 16577.812648 eV Total energy + Delta-G solvation = -2957.512883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59937 -38.18800 -35.61081 -33.50619 -33.19313 -32.13055 -31.23404 -28.07259 -26.67369 -24.86093 -24.04024 -22.27683 -21.06216 -19.91350 -19.50043 -17.44498 -16.83111 -16.23755 -15.89809 -15.62894 -14.88888 -14.75243 -14.38239 -14.13167 -14.06396 -13.83963 -13.47428 -12.78484 -12.53283 -12.27792 -11.79714 -11.61658 -11.42342 -11.31469 -11.03234 -10.99392 -10.62738 -10.57016 -10.31714 -10.19343 -9.47722 -9.25024 -9.11289 -8.99750 -8.93144 -8.40314 -8.22645 -5.89076 -3.89995 2.51010 2.64262 3.39006 3.44888 3.49480 4.01371 4.42631 4.54021 4.55516 4.58495 4.78445 4.91145 5.02450 5.12209 5.37002 5.43984 5.46569 5.47926 5.50182 5.68538 5.69282 5.72000 5.89149 6.20444 6.32503 6.54179 6.60490 6.73485 6.98514 7.15862 7.25649 7.37449 7.62095 7.67801 7.83462 8.01043 8.14058 8.23637 8.57916 9.17947 9.73315 11.22485 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.004567 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.943268 B = 6129.165559 C = 6786.710437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.097 4.097 11 C -0.095 4.095 12 C 0.092 3.908 13 H 0.108 0.892 14 N -0.816 5.816 15 C 0.513 3.487 16 O -0.552 6.552 17 N -0.463 5.463 18 C 0.079 3.921 19 C -0.136 4.136 20 C -0.156 4.156 21 C 0.036 3.964 22 N -0.435 5.435 23 H 0.258 0.742 24 H 0.011 0.989 25 H 0.012 0.988 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.347 0.653 31 H 0.335 0.665 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -19.223 -7.556 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.023 4.023 13 H 0.126 0.874 14 N -0.344 5.344 15 C 0.301 3.699 16 O -0.427 6.427 17 N -0.288 5.288 18 C -0.046 4.046 19 C -0.175 4.175 20 C -0.196 4.196 21 C -0.094 4.094 22 N -0.160 5.160 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.932 -18.117 -6.805 19.375 hybrid contribution -0.382 -0.996 -0.630 1.239 sum 0.549 -19.113 -7.435 20.516 Atomic orbital electron populations 1.69972 1.06045 1.26333 1.51544 1.25024 0.94804 0.99143 0.95613 0.86633 0.79936 0.83681 0.77979 1.20793 1.21378 1.19856 1.21308 0.93088 0.91150 1.49614 0.92681 1.19112 0.94143 0.91677 0.96765 1.21505 0.98684 0.92347 1.00978 1.21534 0.96512 0.93792 1.01461 1.21594 0.95920 0.90245 0.94531 0.87395 1.59104 1.17457 1.54147 1.03658 1.22528 0.78190 0.88746 0.80420 1.90664 1.58407 1.58003 1.35652 1.47640 1.56911 1.19502 1.04719 1.22090 0.92978 0.86618 1.02876 1.21973 0.97293 1.01165 0.97037 1.22194 1.02082 0.97778 0.97504 1.22650 0.90366 0.96589 0.99747 1.61655 1.12740 1.37769 1.03840 0.93214 0.97016 0.96971 0.92157 0.93617 0.91543 0.92875 0.83929 0.85302 0.91801 0.88442 0.90988 0.90714 0.90540 0.91774 0.88636 0.89345 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.08 5.04 -26.73 -0.13 -2.22 16 11 C -0.09 -1.69 4.84 -26.73 -0.13 -1.82 16 12 C 0.09 1.38 2.59 -68.86 -0.18 1.21 16 13 H 0.11 1.55 7.75 -51.93 -0.40 1.15 16 14 N -0.82 -12.00 8.44 -5.65 -0.05 -12.05 16 15 C 0.51 7.54 7.01 -10.99 -0.08 7.47 16 16 O -0.55 -9.47 15.65 5.56 0.09 -9.39 16 17 N -0.46 -5.49 3.20 -59.84 -0.19 -5.68 16 18 C 0.08 0.79 6.57 -3.65 -0.02 0.77 16 19 C -0.14 -1.16 6.18 -26.44 -0.16 -1.33 16 20 C -0.16 -1.17 6.09 -26.56 -0.16 -1.33 16 21 C 0.04 0.33 6.77 -3.71 -0.03 0.30 16 22 N -0.44 -4.40 5.78 -10.26 -0.06 -4.46 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.16 7.44 -51.93 -0.39 0.78 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.35 5.27 8.58 -39.29 -0.34 4.93 16 31 H 0.34 4.27 9.06 -39.29 -0.36 3.92 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.10 1.14 6.99 -51.93 -0.36 0.77 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 40 H 0.34 2.71 9.03 -181.16 -1.64 1.07 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -32.79 323.69 -9.12 -41.91 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.06 Total: 4.87 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.44 Total: -10.30 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.44 Total: -49.07 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.79 -9.12 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594452231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.278 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds