Wall clock time and date at job start Mon Mar 30 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00220 * 2 1 4 4 O 1.20829 * 120.00093 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00170 * 180.02562 * 3 2 1 6 6 N 1.46896 * 109.47516 * 185.81421 * 5 3 2 7 7 C 1.46893 * 111.00181 * 295.76940 * 6 5 3 8 8 C 1.50699 * 109.47313 * 293.95415 * 7 6 5 9 9 H 1.07994 * 119.99902 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00045 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00261 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99731 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47427 * 89.99740 * 12 10 8 14 14 H 1.48499 * 109.47251 * 209.99858 * 12 10 8 15 15 H 1.48505 * 109.47174 * 329.99755 * 12 10 8 16 16 C 1.46906 * 110.99934 * 59.72284 * 6 5 3 17 17 C 1.53000 * 109.47084 * 179.97438 * 16 6 5 18 18 C 1.52999 * 109.47017 * 179.97438 * 17 16 6 19 19 C 1.53010 * 109.46916 * 60.00189 * 18 17 16 20 20 C 1.53000 * 109.47123 * 299.99746 * 19 18 17 21 21 C 1.53001 * 109.46850 * 59.92526 * 16 6 5 22 22 H 1.09002 * 109.47150 * 299.99769 * 1 2 3 23 23 H 1.09009 * 109.47213 * 59.99378 * 1 2 3 24 24 H 1.08994 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46926 * 65.81027 * 5 3 2 26 26 H 1.09008 * 109.46976 * 305.81453 * 5 3 2 27 27 H 1.09005 * 109.46789 * 53.95000 * 7 6 5 28 28 H 1.08996 * 109.47614 * 173.95123 * 7 6 5 29 29 H 0.96997 * 119.99817 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47253 * 299.92786 * 16 6 5 31 31 H 1.09003 * 109.47273 * 299.99719 * 17 16 6 32 32 H 1.09004 * 109.47113 * 60.00237 * 17 16 6 33 33 H 1.08999 * 109.47388 * 300.00316 * 18 17 16 34 34 H 1.08997 * 109.47388 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46576 * 180.02562 * 19 18 17 36 36 H 1.08999 * 109.46988 * 59.99882 * 19 18 17 37 37 H 1.09003 * 109.47273 * 300.00472 * 20 19 18 38 38 H 1.08995 * 109.47314 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47359 * 299.99962 * 21 16 6 40 40 H 1.09003 * 109.47424 * 60.00333 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9833 2.6763 0.1398 7 6 3.5541 3.4718 -1.0180 8 6 4.2851 3.0019 -2.2492 9 1 4.9976 2.1935 -2.1785 10 6 4.0443 3.6042 -3.4659 11 7 3.1762 4.5884 -3.5522 12 14 4.9510 3.0221 -4.9919 13 1 4.1700 1.9447 -5.6510 14 1 5.1176 4.1590 -5.9325 15 1 6.2863 2.4998 -4.6052 16 6 3.4765 3.2534 1.3921 17 6 3.9308 4.7102 1.5028 18 6 3.4024 5.3115 2.8068 19 6 3.9487 4.5152 3.9937 20 6 3.4944 3.0584 3.8829 21 6 4.0223 2.4563 2.5786 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.9508 0.8735 -0.9383 26 1 3.9609 0.6931 0.8326 27 1 2.4808 3.3505 -1.1644 28 1 3.7801 4.5232 -0.8405 29 1 3.0065 5.0117 -4.4082 30 1 2.3873 3.2119 1.3967 31 1 5.0200 4.7526 1.4980 32 1 3.5413 5.2776 0.6575 33 1 2.3133 5.2691 2.8113 34 1 3.7264 6.3492 2.8859 35 1 3.5719 4.9434 4.9226 36 1 5.0379 4.5576 3.9891 37 1 2.4052 3.0161 3.8874 38 1 3.8839 2.4911 4.7282 39 1 3.6980 1.4188 2.4993 40 1 5.1115 2.4979 2.5741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595663586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:49 Heat of formation + Delta-G solvation = -90.926449 kcal Electronic energy + Delta-G solvation = -20423.390406 eV Core-core repulsion = 17430.970000 eV Total energy + Delta-G solvation = -2992.420406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27096 -38.42743 -36.26214 -34.78130 -32.49147 -30.62472 -29.52041 -28.36117 -26.85240 -25.10787 -22.68181 -21.78530 -20.97265 -19.87435 -19.20229 -17.13551 -16.65977 -16.12941 -15.57186 -15.25813 -14.65123 -14.33596 -13.92029 -13.79949 -13.42480 -13.26028 -13.09228 -12.53168 -12.02550 -11.94034 -11.75761 -11.63664 -11.23360 -11.01894 -10.84267 -10.71131 -10.67935 -10.63686 -10.37713 -10.24581 -10.14953 -9.88820 -9.76545 -9.33603 -9.10882 -8.37441 -7.22807 -5.97768 -3.99220 2.81183 3.28138 3.32948 3.39389 3.42981 4.42567 4.71687 5.04229 5.06574 5.26685 5.34375 5.37435 5.39989 5.47156 5.57811 5.67762 5.73565 5.82243 5.84480 5.88427 5.88905 5.98271 6.14521 6.20137 6.27965 6.41132 6.45410 6.53618 6.59159 6.82227 6.83587 6.95208 7.31142 7.61684 7.79736 8.04220 8.20534 8.39169 8.54899 9.08043 9.63371 11.12536 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.007989 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.964798 B = 3504.022271 C = 4592.917735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.372 6.372 3 C 0.428 3.572 4 O -0.495 6.495 5 C 0.070 3.930 6 N -0.503 5.503 7 C 0.168 3.832 8 C -0.513 4.513 9 H 0.061 0.939 10 C 0.056 3.944 11 N -0.894 5.894 12 Si 0.894 3.106 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.067 3.933 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.115 4.115 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 -5.660 12.394 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.289 6.289 3 C 0.269 3.731 4 O -0.381 6.381 5 C -0.061 4.061 6 N -0.226 5.226 7 C 0.044 3.956 8 C -0.552 4.552 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.041 4.041 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.153 4.153 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.141 0.859 26 H 0.116 0.884 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.288 -5.193 12.269 13.385 hybrid contribution -0.740 -0.180 -1.070 1.314 sum -2.028 -5.373 11.198 12.585 Atomic orbital electron populations 1.23095 0.78084 1.02651 1.02112 1.86575 1.22360 1.35358 1.84603 1.26161 0.94076 0.80981 0.71875 1.90600 1.67320 1.35721 1.44504 1.22231 0.83807 0.94794 1.05274 1.62705 1.56039 0.99958 1.03858 1.20189 0.96598 0.93433 0.85385 1.21212 1.23469 1.18442 0.92091 0.92036 1.24966 0.95424 0.95154 0.98962 1.69974 1.34311 1.23851 1.25223 0.86563 0.80199 0.78185 0.82859 1.20843 1.21290 1.19743 1.21841 0.98591 0.94257 0.89454 1.21603 1.01164 0.95134 0.96938 1.21534 1.00410 0.98649 0.94934 1.21527 1.00733 0.95393 0.97775 1.21505 1.00507 0.96009 0.97349 1.21675 1.01294 0.98413 0.93876 0.92640 0.92210 0.88959 0.85932 0.88446 0.95398 0.94307 0.93020 0.92288 0.91644 0.90860 0.92427 0.92301 0.92754 0.92048 0.92537 0.92455 0.92786 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.40 10.56 -39.25 -0.41 -6.81 16 3 C 0.43 8.47 7.27 36.00 0.26 8.73 16 4 O -0.49 -11.28 11.39 -18.75 -0.21 -11.49 16 5 C 0.07 1.32 5.40 -4.98 -0.03 1.29 16 6 N -0.50 -10.70 4.57 -229.52 -1.05 -11.75 16 7 C 0.17 4.41 4.20 -4.98 -0.02 4.39 16 8 C -0.51 -14.33 8.45 -34.44 -0.29 -14.62 16 9 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.07 1.24 1.57 -67.71 -0.11 1.14 16 17 C -0.11 -1.99 4.88 -26.73 -0.13 -2.12 16 18 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 19 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 20 C -0.12 -1.49 5.92 -26.70 -0.16 -1.64 16 21 C -0.11 -1.72 4.97 -26.70 -0.13 -1.85 16 22 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 23 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.12 2.41 6.75 -51.93 -0.35 2.06 16 26 H 0.10 1.51 6.32 -51.92 -0.33 1.18 16 27 H 0.03 0.82 5.44 -51.93 -0.28 0.54 16 28 H 0.04 1.09 5.70 -51.93 -0.30 0.79 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.06 1.23 5.55 -51.93 -0.29 0.94 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.52 6.14 -51.93 -0.32 1.20 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.78 6.41 -51.93 -0.33 0.44 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -31.41 308.49 -7.62 -39.03 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.36 Total: 1.06 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 0.05 Total: -5.11 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.31 Total: -38.01 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.63 Total: -18.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.41 -7.62 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595663586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.893 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds