Wall clock time and date at job start Mon Mar 30 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47240 * 2 1 4 4 C 1.37094 * 119.99963 * 86.06296 * 3 2 1 5 5 H 1.08002 * 120.00464 * 210.11675 * 4 3 2 6 6 C 1.38954 * 119.99961 * 30.12349 * 4 3 2 7 7 N 1.31407 * 119.99767 * 40.48059 * 6 4 3 8 8 Si 1.86800 * 119.99692 * 220.48654 * 6 4 3 9 9 H 1.48504 * 109.46736 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47215 * 299.99516 * 8 6 4 11 11 H 1.48500 * 109.47070 * 59.99683 * 8 6 4 12 12 C 1.34782 * 119.99849 * 266.07023 * 3 2 1 13 13 O 1.21297 * 119.99511 * 179.97438 * 12 3 2 14 14 C 1.50692 * 120.00307 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47432 * 179.97438 * 14 12 3 16 16 H 1.08997 * 109.47196 * 304.99980 * 15 14 12 17 17 C 1.53002 * 109.46769 * 64.99979 * 15 14 12 18 18 C 1.53003 * 109.47162 * 184.99969 * 15 14 12 19 19 H 1.08995 * 109.86831 * 59.30193 * 18 15 14 20 20 C 1.54107 * 109.87528 * 180.30941 * 18 15 14 21 21 C 1.54812 * 104.18835 * 121.45388 * 20 18 15 22 22 C 1.55002 * 102.08969 * 20.87698 * 21 20 18 23 23 O 1.43741 * 109.87837 * 298.29094 * 18 15 14 24 24 H 1.08999 * 109.47540 * 59.99708 * 1 2 3 25 25 H 1.09007 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46905 * 299.99484 * 1 2 3 27 27 H 1.09004 * 109.46905 * 240.00516 * 2 1 3 28 28 H 1.08999 * 109.47540 * 120.00292 * 2 1 3 29 29 H 0.96995 * 120.00696 * 5.85814 * 7 6 4 30 30 H 1.09004 * 109.47363 * 300.00546 * 14 12 3 31 31 H 1.09001 * 109.47453 * 59.99867 * 14 12 3 32 32 H 1.09003 * 109.46909 * 180.02562 * 17 15 14 33 33 H 1.09001 * 109.47364 * 299.99767 * 17 15 14 34 34 H 1.09001 * 109.47030 * 60.00467 * 17 15 14 35 35 H 1.09004 * 110.48180 * 240.13021 * 20 18 15 36 36 H 1.08998 * 110.48655 * 2.64229 * 20 18 15 37 37 H 1.08998 * 110.90635 * 139.07434 * 21 20 18 38 38 H 1.08997 * 110.90442 * 262.64827 * 21 20 18 39 39 H 1.09004 * 110.61468 * 81.48035 * 22 21 20 40 40 H 1.09002 * 110.61296 * 204.47155 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1700 2.0546 1.1845 5 1 2.0481 3.1273 1.2153 6 6 2.4807 1.3571 2.3454 7 7 3.3489 0.3715 2.3072 8 14 1.6641 1.8206 3.9602 9 1 2.1621 0.9309 5.0399 10 1 1.9881 3.2314 4.2918 11 1 0.1925 1.6675 3.8326 12 6 2.3184 1.9899 -1.1645 13 8 2.7223 3.1336 -1.1645 14 6 2.1521 1.2495 -2.4665 15 6 2.5580 2.1606 -3.6267 16 1 1.9866 3.0875 -3.5779 17 6 4.0518 2.4764 -3.5286 18 6 2.2720 1.4545 -4.9536 19 1 1.2110 1.2153 -5.0248 20 6 2.6848 2.3614 -6.1292 21 6 3.7290 1.5235 -6.9065 22 6 3.4036 0.0826 -6.4368 23 8 3.0518 0.2505 -5.0446 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8358 0.1854 1.4892 30 1 2.7843 0.3616 -2.4629 31 1 1.1100 0.9529 -2.5853 32 1 4.3409 3.1258 -4.3550 33 1 4.2556 2.9794 -2.5833 34 1 4.6231 1.5494 -3.5776 35 1 1.8246 2.5811 -6.7618 36 1 3.1316 3.2846 -5.7603 37 1 3.5853 1.6237 -7.9823 38 1 4.7430 1.8058 -6.6232 39 1 2.5612 -0.3227 -6.9974 40 1 4.2779 -0.5605 -6.5374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596915810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:45 Heat of formation + Delta-G solvation = -110.578523 kcal Electronic energy + Delta-G solvation = -20072.647550 eV Core-core repulsion = 17079.374966 eV Total energy + Delta-G solvation = -2993.272584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04996 -40.14488 -37.27853 -35.40309 -34.01631 -32.93476 -31.19460 -29.69517 -28.60338 -26.42312 -24.52204 -23.90858 -22.52235 -21.25916 -20.36498 -19.11354 -17.93748 -17.23305 -16.90674 -16.47302 -16.38923 -16.08060 -15.59815 -15.02283 -14.76911 -14.62531 -14.40904 -14.05329 -13.83526 -13.25860 -13.10678 -12.82203 -12.78568 -12.65401 -12.47350 -12.24139 -12.14987 -12.07163 -11.93681 -11.87363 -11.68430 -11.56859 -11.42321 -10.81769 -10.54499 -10.13498 -9.74096 -8.83101 -5.97041 1.48963 1.53838 1.81712 2.04620 2.41325 2.82209 2.99483 3.07848 3.66223 3.75295 3.96820 4.02938 4.06305 4.10483 4.14958 4.39141 4.42143 4.46834 4.53355 4.62823 4.69536 4.77714 4.81840 4.86914 4.89775 4.95993 4.98146 5.04487 5.08638 5.18646 5.27659 5.31711 5.37099 5.50375 5.84156 5.95418 6.06494 6.64541 7.02605 7.47791 8.03332 8.38450 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.005108 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.423011 B = 5479.938348 C = 5693.015173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 N -0.462 5.462 4 C -0.446 4.446 5 H 0.048 0.952 6 C -0.009 4.009 7 N -0.862 5.862 8 Si 1.106 2.894 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.265 1.265 12 C 0.436 3.564 13 O -0.622 6.622 14 C -0.109 4.109 15 C -0.066 4.066 16 H 0.071 0.929 17 C -0.136 4.136 18 C 0.085 3.915 19 H 0.076 0.924 20 C -0.152 4.152 21 C -0.148 4.148 22 C 0.038 3.962 23 O -0.394 6.394 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 -3.414 -16.645 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 N -0.181 5.181 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.215 4.215 7 N -0.493 5.493 8 Si 0.926 3.074 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.190 1.190 12 C 0.227 3.773 13 O -0.509 6.509 14 C -0.149 4.149 15 C -0.085 4.085 16 H 0.090 0.910 17 C -0.193 4.193 18 C 0.027 3.973 19 H 0.094 0.906 20 C -0.190 4.190 21 C -0.186 4.186 22 C -0.038 4.038 23 O -0.314 6.314 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.931 -3.469 -14.869 15.766 hybrid contribution 0.449 0.751 -1.402 1.653 sum -3.483 -2.718 -16.272 16.861 Atomic orbital electron populations 1.21979 0.94450 1.02636 1.01572 1.21680 0.95903 0.83563 1.02369 1.43935 1.56080 1.13062 1.05062 1.19918 1.56150 0.93860 0.87342 0.93357 1.27531 0.93929 0.94966 1.05067 1.70886 1.16438 1.32798 1.29205 0.83096 0.76624 0.76405 0.71301 1.19907 1.20387 1.19011 1.21298 0.80921 0.88238 0.86822 1.90428 1.51614 1.20943 1.87939 1.21498 1.03092 0.98999 0.91317 1.20983 0.97570 0.97341 0.92609 0.91042 1.21728 0.95498 1.00788 1.01253 1.22794 0.95345 0.84996 0.94159 0.90589 1.23045 1.00425 0.99274 0.96208 1.23103 0.99336 0.94552 1.01564 1.23780 1.00894 0.97486 0.81641 1.88932 1.72600 1.42712 1.27182 0.92542 0.89399 0.93895 0.90327 0.91849 0.92821 0.89820 0.88887 0.91546 0.94545 0.93404 0.88821 0.90667 0.87992 0.91197 0.90832 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 10.22 71.98 0.74 -4.57 16 2 C 0.09 3.83 5.48 86.38 0.47 4.30 16 3 N -0.46 -24.31 2.45 -635.53 -1.55 -25.86 16 4 C -0.45 -26.36 8.79 84.04 0.74 -25.62 16 5 H 0.05 3.15 7.76 -2.91 -0.02 3.13 16 6 C -0.01 -0.48 4.51 84.93 0.38 -0.10 16 7 N -0.86 -49.29 12.21 21.66 0.26 -49.03 16 8 Si 1.11 48.46 30.06 68.60 2.06 50.52 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 C 0.44 22.23 7.34 87.65 0.64 22.87 16 13 O -0.62 -36.48 13.74 -3.08 -0.04 -36.52 16 14 C -0.11 -4.17 3.48 29.84 0.10 -4.06 16 15 C -0.07 -2.23 1.82 -10.79 -0.02 -2.25 16 16 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 17 C -0.14 -4.88 8.51 71.98 0.61 -4.27 16 18 C 0.08 2.15 3.15 30.97 0.10 2.25 16 19 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 20 C -0.15 -2.95 6.14 31.59 0.19 -2.76 16 21 C -0.15 -2.41 7.16 31.90 0.23 -2.18 16 22 C 0.04 0.70 7.72 72.67 0.56 1.26 16 23 O -0.39 -10.68 10.00 -148.98 -1.49 -12.17 16 24 H 0.06 1.87 7.72 -2.39 -0.02 1.85 16 25 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 3.00 6.30 -2.39 -0.02 2.98 16 28 H 0.06 3.04 5.72 -2.39 -0.01 3.03 16 29 H 0.26 15.54 8.13 -92.71 -0.75 14.78 16 30 H 0.08 3.19 7.17 -2.39 -0.02 3.17 16 31 H 0.09 3.12 7.69 -2.39 -0.02 3.10 16 32 H 0.07 2.00 6.40 -2.39 -0.02 1.99 16 33 H 0.04 1.63 5.95 -2.39 -0.01 1.61 16 34 H 0.05 1.70 7.66 -2.39 -0.02 1.69 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.59 6.23 -2.39 -0.01 1.58 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.72 313.92 5.02 -66.70 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.03 Total: 21.48 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 4.75 Total: -15.12 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.29 Total: -74.89 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.53 Total: -48.69 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.06 Total: 50.52 kcal Total: -71.72 5.02 -66.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596915810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.880 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds