Wall clock time and date at job start Mon Mar 30 2020 05:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00250 * 2 1 4 4 H 1.09001 * 110.01587 * 331.39192 * 3 2 1 5 5 C 1.53869 * 110.07593 * 92.80773 * 3 2 1 6 6 C 1.54266 * 106.59800 * 119.30684 * 5 3 2 7 7 C 1.55238 * 104.23333 * 23.61579 * 6 5 3 8 8 H 1.08993 * 110.76342 * 80.31404 * 7 6 5 9 9 C 1.50702 * 110.89800 * 203.79412 * 7 6 5 10 10 O 1.21282 * 119.99912 * 113.21231 * 9 7 6 11 11 N 1.34775 * 119.99656 * 293.21263 * 9 7 6 12 12 C 1.46502 * 119.99668 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47022 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46882 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.46910 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00053 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46686 * 120.00372 * 19 17 15 22 22 H 1.48500 * 109.47310 * 240.00390 * 19 17 15 23 23 C 1.54266 * 110.03281 * 210.00286 * 3 2 1 24 24 H 1.09004 * 109.47180 * 299.99763 * 1 2 3 25 25 H 1.08999 * 109.47355 * 59.99604 * 1 2 3 26 26 H 1.09007 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.08999 * 110.04012 * 238.59331 * 5 3 2 28 28 H 1.09003 * 110.03070 * 0.02858 * 5 3 2 29 29 H 1.09005 * 110.48526 * 142.29451 * 6 5 3 30 30 H 1.09007 * 110.48724 * 264.79935 * 6 5 3 31 31 H 0.96997 * 120.00428 * 359.97438 * 11 9 7 32 32 H 1.09008 * 109.46968 * 299.99835 * 12 11 9 33 33 H 1.08995 * 109.47466 * 59.99529 * 12 11 9 34 34 H 1.08997 * 109.46626 * 299.99860 * 13 12 11 35 35 H 1.08997 * 109.46772 * 59.99747 * 13 12 11 36 36 H 1.09008 * 109.47016 * 299.99702 * 14 13 12 37 37 H 1.08995 * 109.47559 * 59.99482 * 14 13 12 38 38 H 0.97001 * 120.00579 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.48629 * 335.73433 * 23 3 2 40 40 H 1.08998 * 110.48744 * 98.24337 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3406 2.0119 -0.4904 5 6 2.2898 1.7591 1.4435 6 6 3.8115 1.9911 1.5456 7 6 4.2555 2.2606 0.0827 8 1 4.0452 3.2917 -0.2012 9 6 5.7165 1.9413 -0.1031 10 8 6.0495 1.0156 -0.8125 11 7 6.6531 2.6843 0.5191 12 6 8.0734 2.3743 0.3381 13 6 8.9180 3.3606 1.1474 14 6 10.4013 3.0371 0.9578 15 6 11.2331 4.0089 1.7545 16 1 10.7519 4.7803 2.3373 17 6 12.6085 3.9132 1.7392 18 7 13.1945 2.9741 1.0291 19 14 13.6396 5.1183 2.7262 20 1 12.7464 6.0708 3.4331 21 1 14.4548 4.3742 3.7198 22 1 14.5374 5.8673 1.8107 23 6 3.3718 1.2776 -0.7247 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7559 2.6858 1.6537 28 1 1.9825 0.9833 2.1448 29 1 4.0241 2.8560 2.1740 30 1 4.3071 1.1037 1.9393 31 1 6.3868 3.4249 1.0862 32 1 8.2706 1.3592 0.6831 33 1 8.3314 2.4556 -0.7178 34 1 8.7208 4.3756 0.8028 35 1 8.6598 3.2787 2.2032 36 1 10.5987 2.0218 1.3022 37 1 10.6590 3.1191 -0.0980 38 1 14.1621 2.9070 1.0180 39 1 3.7967 0.2741 -0.7000 40 1 3.2632 1.6196 -1.7540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:26 Heat of formation + Delta-G solvation = -115.717914 kcal Electronic energy + Delta-G solvation = -18487.389280 eV Core-core repulsion = 15493.893836 eV Total energy + Delta-G solvation = -2993.495445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10747 -38.60035 -35.98809 -35.30039 -33.29736 -31.26790 -29.23336 -28.85259 -26.77991 -26.17931 -23.39613 -21.79751 -20.65286 -20.62666 -19.51019 -17.56429 -16.64293 -16.38415 -16.14378 -15.37891 -15.20879 -15.03416 -14.58244 -14.44755 -13.94157 -13.67424 -13.27211 -12.39181 -12.32737 -12.19050 -11.97013 -11.85083 -11.67722 -11.65660 -11.30334 -11.00637 -10.91897 -10.74803 -10.72784 -10.56527 -9.87130 -9.85906 -9.80116 -9.33701 -9.09725 -8.74955 -8.37840 -6.02116 -4.05227 2.79681 3.27838 3.29640 3.37176 3.40670 3.64593 4.21919 4.29038 4.44116 4.64485 4.87677 4.97823 5.01675 5.09451 5.18976 5.22123 5.27809 5.31958 5.33683 5.46324 5.62851 5.68519 5.75702 5.78903 5.83838 5.95037 6.12813 6.17387 6.51352 6.60530 6.84629 6.97476 7.01009 7.63682 7.74335 7.76143 7.96789 8.37216 8.43773 9.01746 9.59017 11.09220 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.062259 B = 0.002890 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.624998 B = 9685.489825 C = 9960.650688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.083 3.917 4 H 0.065 0.935 5 C -0.146 4.146 6 C -0.110 4.110 7 C -0.115 4.115 8 H 0.102 0.898 9 C 0.515 3.485 10 O -0.542 6.542 11 N -0.725 5.725 12 C 0.115 3.885 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.102 4.102 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.398 0.602 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.094 0.906 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.307 -0.607 -0.174 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.083 0.917 5 C -0.183 4.183 6 C -0.147 4.147 7 C -0.137 4.137 8 H 0.120 0.880 9 C 0.301 3.699 10 O -0.420 6.420 11 N -0.376 5.376 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.140 4.140 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.231 0.769 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.763 -1.518 -0.736 24.821 hybrid contribution 0.359 1.283 0.815 1.562 sum -24.405 -0.235 0.079 24.406 Atomic orbital electron populations 1.22781 0.81418 1.02687 0.99792 1.87989 1.19337 1.27756 1.94929 1.22856 0.95021 0.84417 0.95226 0.91713 1.22676 0.96502 1.01725 0.97447 1.22336 0.95364 1.02626 0.94420 1.22302 0.92183 1.01409 0.97775 0.87975 1.20362 0.87501 0.82340 0.79710 1.90702 1.82674 1.29934 1.38641 1.46211 1.07421 1.34185 1.49734 1.21649 0.77991 1.00105 1.00990 1.21880 0.98479 0.97158 0.98296 1.19038 0.87681 0.97257 0.97497 1.21240 0.91260 1.14796 1.28685 0.92603 1.25040 0.98162 0.95686 0.95647 1.69974 1.09728 1.32891 1.40676 0.86525 0.80322 0.81126 0.79947 1.19771 1.20996 1.20998 1.22266 0.92221 1.01406 0.98124 0.94172 0.94110 0.89736 0.91158 0.90416 0.90645 0.90646 0.76858 0.91813 0.91813 0.92768 0.92747 0.96269 0.96279 0.92971 0.88739 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.30 16 2 O -0.38 -4.01 10.26 -35.23 -0.36 -4.37 16 3 C 0.08 0.75 3.38 -25.62 -0.09 0.66 16 4 H 0.06 0.47 7.80 -51.93 -0.41 0.07 16 5 C -0.15 -1.16 6.62 -25.62 -0.17 -1.33 16 6 C -0.11 -0.98 6.28 -24.88 -0.16 -1.14 16 7 C -0.12 -1.19 3.30 -89.59 -0.30 -1.49 16 8 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 9 C 0.52 7.57 7.15 -10.99 -0.08 7.50 16 10 O -0.54 -10.32 15.72 5.56 0.09 -10.24 16 11 N -0.73 -10.30 5.56 -60.29 -0.33 -10.64 16 12 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.10 -1.12 5.62 -25.07 -0.14 -1.26 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.24 8.10 -51.93 -0.42 -0.18 16 26 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.79 8.05 -51.93 -0.42 0.38 16 31 H 0.40 4.47 8.47 -40.82 -0.35 4.13 16 32 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 1.30 7.37 -51.93 -0.38 0.92 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -33.02 330.88 -7.45 -40.47 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.00 Total: -1.34 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.55 Total: -9.17 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.40 Total: -36.82 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.27 Total: -14.61 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.02 -7.45 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.248 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds