Wall clock time and date at job start Mon Mar 30 2020 05:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00250 * 2 1 4 4 H 1.09001 * 110.01587 * 331.39192 * 3 2 1 5 5 C 1.53869 * 110.07593 * 92.80773 * 3 2 1 6 6 C 1.54266 * 106.59800 * 119.30684 * 5 3 2 7 7 C 1.55238 * 104.23333 * 23.61579 * 6 5 3 8 8 H 1.08993 * 110.76342 * 80.31404 * 7 6 5 9 9 C 1.50702 * 110.89800 * 203.79412 * 7 6 5 10 10 O 1.21282 * 119.99912 * 113.21231 * 9 7 6 11 11 N 1.34775 * 119.99656 * 293.21263 * 9 7 6 12 12 C 1.46502 * 119.99668 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47022 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46882 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.46910 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00053 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46686 * 120.00372 * 19 17 15 22 22 H 1.48500 * 109.47310 * 240.00390 * 19 17 15 23 23 C 1.54266 * 110.03281 * 210.00286 * 3 2 1 24 24 H 1.09004 * 109.47180 * 299.99763 * 1 2 3 25 25 H 1.08999 * 109.47355 * 59.99604 * 1 2 3 26 26 H 1.09007 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.08999 * 110.04012 * 238.59331 * 5 3 2 28 28 H 1.09003 * 110.03070 * 0.02858 * 5 3 2 29 29 H 1.09005 * 110.48526 * 142.29451 * 6 5 3 30 30 H 1.09007 * 110.48724 * 264.79935 * 6 5 3 31 31 H 0.96997 * 120.00428 * 359.97438 * 11 9 7 32 32 H 1.09008 * 109.46968 * 299.99835 * 12 11 9 33 33 H 1.08995 * 109.47466 * 59.99529 * 12 11 9 34 34 H 1.08997 * 109.46626 * 299.99860 * 13 12 11 35 35 H 1.08997 * 109.46772 * 59.99747 * 13 12 11 36 36 H 1.09008 * 109.47016 * 299.99702 * 14 13 12 37 37 H 1.08995 * 109.47559 * 59.99482 * 14 13 12 38 38 H 0.97001 * 120.00579 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.48629 * 335.73433 * 23 3 2 40 40 H 1.08998 * 110.48744 * 98.24337 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3406 2.0119 -0.4904 5 6 2.2898 1.7591 1.4435 6 6 3.8115 1.9911 1.5456 7 6 4.2555 2.2606 0.0827 8 1 4.0452 3.2917 -0.2012 9 6 5.7165 1.9413 -0.1031 10 8 6.0495 1.0156 -0.8125 11 7 6.6531 2.6843 0.5191 12 6 8.0734 2.3743 0.3381 13 6 8.9180 3.3606 1.1474 14 6 10.4013 3.0371 0.9578 15 6 11.2331 4.0089 1.7545 16 1 10.7519 4.7803 2.3373 17 6 12.6085 3.9132 1.7392 18 7 13.1945 2.9741 1.0291 19 14 13.6396 5.1183 2.7262 20 1 12.7464 6.0708 3.4331 21 1 14.4548 4.3742 3.7198 22 1 14.5374 5.8673 1.8107 23 6 3.3718 1.2776 -0.7247 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7559 2.6858 1.6537 28 1 1.9825 0.9833 2.1448 29 1 4.0241 2.8560 2.1740 30 1 4.3071 1.1037 1.9393 31 1 6.3868 3.4249 1.0862 32 1 8.2706 1.3592 0.6831 33 1 8.3314 2.4556 -0.7178 34 1 8.7208 4.3756 0.8028 35 1 8.6598 3.2787 2.2032 36 1 10.5987 2.0218 1.3022 37 1 10.6590 3.1191 -0.0980 38 1 14.1621 2.9070 1.0180 39 1 3.7967 0.2741 -0.7000 40 1 3.2632 1.6196 -1.7540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:25 Heat of formation + Delta-G solvation = -138.457159 kcal Electronic energy + Delta-G solvation = -18488.375328 eV Core-core repulsion = 15493.893836 eV Total energy + Delta-G solvation = -2994.481492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16333 -39.47518 -37.08690 -36.56457 -35.19159 -33.04743 -30.14570 -29.66072 -28.30267 -26.96577 -25.10061 -22.93984 -22.31457 -21.30810 -20.68559 -18.62405 -18.41028 -17.36736 -17.11070 -16.77177 -16.44815 -16.25978 -15.92300 -15.45819 -15.04277 -14.75221 -14.28170 -14.24529 -13.77032 -13.51721 -13.08439 -12.97502 -12.77914 -12.59310 -12.55055 -12.36883 -12.27338 -12.09116 -11.80099 -11.68188 -11.58790 -11.37178 -11.21558 -10.75077 -10.56773 -10.49298 -10.09317 -8.19909 -6.31581 1.41841 1.42048 1.55373 1.62717 2.18624 2.42510 2.93192 3.13919 3.42602 3.53674 3.95154 4.07365 4.20388 4.21302 4.32088 4.40486 4.46382 4.50095 4.54553 4.55539 4.61726 4.73198 4.88549 4.93050 4.93895 5.00671 5.08647 5.13986 5.16744 5.23914 5.30384 5.45500 5.53323 5.69969 5.83780 6.21616 6.37183 6.60219 6.86439 7.28129 7.38239 8.92528 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.062259 B = 0.002890 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.624998 B = 9685.489825 C = 9960.650688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.083 3.917 4 H 0.089 0.911 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.104 4.104 8 H 0.139 0.861 9 C 0.511 3.489 10 O -0.593 6.593 11 N -0.712 5.712 12 C 0.128 3.872 13 C -0.100 4.100 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.107 4.107 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.417 0.583 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.069 0.931 36 H -0.010 1.010 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.302 1.922 1.297 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.026 3.974 4 H 0.107 0.893 5 C -0.177 4.177 6 C -0.145 4.145 7 C -0.125 4.125 8 H 0.156 0.844 9 C 0.299 3.701 10 O -0.474 6.474 11 N -0.364 5.364 12 C 0.004 3.996 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.254 0.746 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.799 1.043 0.762 26.831 hybrid contribution 0.960 0.423 0.308 1.094 sum -25.839 1.466 1.070 25.903 Atomic orbital electron populations 1.22959 0.79682 1.03538 1.01006 1.87951 1.21378 1.28862 1.95148 1.22920 0.94087 0.84511 0.95924 0.89261 1.22664 0.95709 1.02879 0.96430 1.22369 0.96009 1.02737 0.93418 1.22338 0.88256 1.02992 0.98924 0.84364 1.21213 0.89302 0.81197 0.78366 1.90686 1.83702 1.32129 1.40850 1.45977 1.05691 1.34755 1.49943 1.21222 0.80135 0.98694 0.99575 1.21584 0.94569 0.98154 0.99479 1.18961 0.91772 0.95487 0.95358 1.21710 0.91970 1.15236 1.28765 0.91393 1.26058 0.99821 0.97629 0.96800 1.70122 1.10178 1.34968 1.42416 0.85342 0.78420 0.78676 0.78249 1.18054 1.20631 1.20592 1.22272 0.93728 0.99485 0.99050 0.92756 0.92984 0.89257 0.88208 0.91015 0.87961 0.93020 0.74601 0.93687 0.93432 0.91162 0.91270 0.99146 0.99062 0.92823 0.92586 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.41 -8.33 10.26 -148.98 -1.53 -9.86 16 3 C 0.08 1.33 3.38 31.32 0.11 1.44 16 4 H 0.09 0.99 7.80 -2.39 -0.02 0.97 16 5 C -0.14 -1.79 6.62 31.32 0.21 -1.59 16 6 C -0.11 -1.65 6.28 31.79 0.20 -1.45 16 7 C -0.10 -1.95 3.30 -10.12 -0.03 -1.98 16 8 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 9 C 0.51 14.83 7.15 87.66 0.63 15.45 16 10 O -0.59 -23.45 15.72 -3.04 -0.05 -23.50 16 11 N -0.71 -19.38 5.56 -463.04 -2.57 -21.95 16 12 C 0.13 4.60 5.67 86.38 0.49 5.09 16 13 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 14 C 0.02 1.15 4.97 29.85 0.15 1.30 16 15 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 18 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 19 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.11 -2.29 5.62 31.67 0.18 -2.11 16 24 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.05 0.50 8.10 -2.39 -0.02 0.48 16 26 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 1.04 7.96 -2.39 -0.02 1.02 16 29 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.04 8.05 -2.38 -0.02 1.03 16 31 H 0.42 8.17 8.47 -92.71 -0.79 7.38 16 32 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.06 1.63 7.37 -2.39 -0.02 1.61 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -74.36 330.88 2.39 -71.98 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.22 Total: 10.55 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.01 Total: -15.73 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -2.29 Total: -79.27 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -1.58 Total: -33.36 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.36 2.39 -71.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.480 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds