Wall clock time and date at job start Mon Mar 30 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00226 * 2 1 4 4 H 1.09001 * 110.54067 * 328.84371 * 3 2 1 5 5 C 1.54891 * 110.48585 * 91.45386 * 3 2 1 6 6 C 1.54883 * 102.75125 * 156.62018 * 5 3 2 7 7 C 1.54270 * 104.19487 * 322.05973 * 6 5 3 8 8 H 1.09000 * 110.02900 * 264.27519 * 7 6 5 9 9 C 1.50703 * 110.03083 * 142.89630 * 7 6 5 10 10 O 1.21283 * 119.99488 * 241.45094 * 9 7 6 11 11 N 1.34777 * 120.00290 * 61.45534 * 9 7 6 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47172 * 90.00092 * 19 17 15 21 21 H 1.48503 * 109.46928 * 209.99961 * 19 17 15 22 22 H 1.48499 * 109.46876 * 329.99803 * 19 17 15 23 23 C 1.53875 * 106.60001 * 23.60860 * 7 6 5 24 24 H 1.08994 * 109.47604 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46913 * 300.00232 * 1 2 3 26 26 H 1.09007 * 109.46904 * 59.99264 * 1 2 3 27 27 H 1.09006 * 110.75480 * 38.30667 * 5 3 2 28 28 H 1.08997 * 110.75605 * 274.93706 * 5 3 2 29 29 H 1.09003 * 110.49106 * 203.38311 * 6 5 3 30 30 H 1.09001 * 110.60170 * 80.79129 * 6 5 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 35 35 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 36 36 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 37 37 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 38 38 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.02980 * 119.28062 * 23 7 6 40 40 H 1.08993 * 110.03283 * 240.71651 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3679 2.0101 -0.5281 5 6 2.2644 1.7856 1.4505 6 6 3.3851 2.8394 1.2703 7 6 4.2882 2.2467 0.1690 8 1 5.1254 1.7135 0.6195 9 6 4.7987 3.3457 -0.7270 10 8 4.5192 3.3447 -1.9072 11 7 5.5657 4.3295 -0.2169 12 6 6.0568 5.4011 -1.0868 13 6 6.8908 6.3845 -0.2633 14 6 7.4042 7.5034 -1.1719 15 6 8.2251 8.4724 -0.3606 16 1 8.3669 8.3066 0.6971 17 6 8.7961 9.5700 -0.9690 18 7 8.6240 9.7717 -2.2571 19 14 9.8144 10.7709 0.0365 20 1 11.2354 10.3399 0.0318 21 1 9.7068 12.1283 -0.5561 22 1 9.3102 10.7990 1.4330 23 6 3.4141 1.2713 -0.6387 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 2.6065 0.9610 2.0760 28 1 1.3677 2.2429 1.8687 29 1 3.9451 2.9632 2.1972 30 1 2.9667 3.7930 0.9482 31 1 5.7889 4.3304 0.7271 32 1 6.6744 4.9735 -1.8767 33 1 5.2106 5.9253 -1.5308 34 1 6.2732 6.8121 0.5266 35 1 7.7370 5.8604 0.1808 36 1 8.0219 7.0756 -1.9614 37 1 6.5581 8.0276 -1.6162 38 1 9.0260 10.5437 -2.6852 39 1 3.3591 1.5929 -1.6787 40 1 3.8266 0.2641 -0.5801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:28 Heat of formation + Delta-G solvation = -115.358326 kcal Electronic energy + Delta-G solvation = -18541.703960 eV Core-core repulsion = 15548.224109 eV Total energy + Delta-G solvation = -2993.479852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20865 -38.52530 -36.02124 -35.33960 -33.32353 -31.29295 -29.21860 -28.86757 -26.77449 -26.09785 -23.34666 -21.68209 -21.00560 -20.64443 -19.32325 -17.54677 -16.86242 -16.40398 -16.01261 -15.43627 -15.19371 -15.08663 -14.46882 -14.24817 -14.06985 -13.71165 -13.32625 -12.73535 -12.30220 -11.98680 -11.95090 -11.70996 -11.67460 -11.62570 -11.40568 -11.01895 -10.91351 -10.75689 -10.74107 -10.60608 -9.88242 -9.86193 -9.74151 -9.35333 -9.12363 -8.78435 -8.38578 -6.03086 -4.06352 2.76812 3.29784 3.33664 3.36444 3.39356 3.53590 4.27150 4.31169 4.43034 4.64428 4.90652 5.01276 5.07026 5.14692 5.17145 5.23947 5.32374 5.32641 5.38431 5.45981 5.64198 5.65221 5.74410 5.76429 5.84570 5.96138 6.13879 6.15302 6.49519 6.58438 6.82483 6.97237 6.99137 7.62041 7.71147 7.74580 7.95560 8.35543 8.40214 9.00376 9.57931 11.08198 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.058328 B = 0.002934 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.930196 B = 9539.497425 C = 9769.787076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.082 3.918 4 H 0.069 0.931 5 C -0.144 4.144 6 C -0.114 4.114 7 C -0.112 4.112 8 H 0.102 0.898 9 C 0.512 3.488 10 O -0.543 6.543 11 N -0.724 5.724 12 C 0.115 3.885 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.115 4.115 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.398 0.602 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.096 0.904 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 -17.628 8.202 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.025 3.975 4 H 0.087 0.913 5 C -0.182 4.182 6 C -0.152 4.152 7 C -0.133 4.133 8 H 0.120 0.880 9 C 0.297 3.703 10 O -0.421 6.421 11 N -0.375 5.375 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.152 4.152 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.740 -17.649 7.186 23.493 hybrid contribution 0.546 1.025 0.968 1.512 sum -13.195 -16.624 8.154 22.737 Atomic orbital electron populations 1.22768 0.81276 1.02584 0.99987 1.87904 1.19516 1.27786 1.94948 1.23068 0.94944 0.84225 0.95305 0.91321 1.22990 0.98733 0.98943 0.97550 1.22280 0.96339 0.98737 0.97845 1.21863 0.99673 0.95537 0.96264 0.88005 1.20508 0.78211 0.82894 0.88641 1.90669 1.58008 1.76575 1.16855 1.46197 1.52112 1.26010 1.13131 1.21651 0.98213 0.87398 0.93480 1.21884 0.97841 0.96888 0.99232 1.19031 0.96206 0.91657 0.94520 1.21202 1.31587 1.08110 0.95180 0.92648 1.25036 0.96555 0.97965 0.94936 1.69965 1.44728 1.29020 1.09575 0.86579 0.80579 0.80469 0.80269 1.20643 1.21197 1.19897 1.22161 0.92497 0.99374 1.01192 0.89767 0.94135 0.93995 0.90183 0.91269 0.90296 0.90740 0.76793 0.91783 0.91832 0.92751 0.92735 0.96282 0.96293 0.92910 0.88512 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.87 101.05 1.10 1.32 16 2 O -0.38 -3.99 10.41 -35.23 -0.37 -4.36 16 3 C 0.08 0.82 3.32 -25.07 -0.08 0.73 16 4 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 5 C -0.14 -1.19 6.62 -24.74 -0.16 -1.35 16 6 C -0.11 -0.97 6.27 -25.07 -0.16 -1.13 16 7 C -0.11 -1.16 3.30 -90.65 -0.30 -1.46 16 8 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 9 C 0.51 7.35 7.00 -10.98 -0.08 7.27 16 10 O -0.54 -10.03 15.21 5.55 0.08 -9.94 16 11 N -0.72 -10.11 5.49 -60.30 -0.33 -10.44 16 12 C 0.12 2.02 5.67 -4.04 -0.02 1.99 16 13 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.11 -1.26 6.16 -25.61 -0.16 -1.42 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 31 H 0.40 4.42 8.44 -40.82 -0.34 4.08 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.10 1.29 6.39 -51.93 -0.33 0.95 16 40 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -32.40 329.74 -7.43 -39.83 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.95 Total: -0.97 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.55 Total: -9.41 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.41 Total: -36.53 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.28 Total: -14.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.40 -7.43 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.533 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds