Wall clock time and date at job start Mon Mar 30 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00226 * 2 1 4 4 H 1.09001 * 110.54067 * 328.84371 * 3 2 1 5 5 C 1.54891 * 110.48585 * 91.45386 * 3 2 1 6 6 C 1.54883 * 102.75125 * 156.62018 * 5 3 2 7 7 C 1.54270 * 104.19487 * 322.05973 * 6 5 3 8 8 H 1.09000 * 110.02900 * 264.27519 * 7 6 5 9 9 C 1.50703 * 110.03083 * 142.89630 * 7 6 5 10 10 O 1.21283 * 119.99488 * 241.45094 * 9 7 6 11 11 N 1.34777 * 120.00290 * 61.45534 * 9 7 6 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47172 * 90.00092 * 19 17 15 21 21 H 1.48503 * 109.46928 * 209.99961 * 19 17 15 22 22 H 1.48499 * 109.46876 * 329.99803 * 19 17 15 23 23 C 1.53875 * 106.60001 * 23.60860 * 7 6 5 24 24 H 1.08994 * 109.47604 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46913 * 300.00232 * 1 2 3 26 26 H 1.09007 * 109.46904 * 59.99264 * 1 2 3 27 27 H 1.09006 * 110.75480 * 38.30667 * 5 3 2 28 28 H 1.08997 * 110.75605 * 274.93706 * 5 3 2 29 29 H 1.09003 * 110.49106 * 203.38311 * 6 5 3 30 30 H 1.09001 * 110.60170 * 80.79129 * 6 5 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 35 35 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 36 36 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 37 37 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 38 38 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.02980 * 119.28062 * 23 7 6 40 40 H 1.08993 * 110.03283 * 240.71651 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3679 2.0101 -0.5281 5 6 2.2644 1.7856 1.4505 6 6 3.3851 2.8394 1.2703 7 6 4.2882 2.2467 0.1690 8 1 5.1254 1.7135 0.6195 9 6 4.7987 3.3457 -0.7270 10 8 4.5192 3.3447 -1.9072 11 7 5.5657 4.3295 -0.2169 12 6 6.0568 5.4011 -1.0868 13 6 6.8908 6.3845 -0.2633 14 6 7.4042 7.5034 -1.1719 15 6 8.2251 8.4724 -0.3606 16 1 8.3669 8.3066 0.6971 17 6 8.7961 9.5700 -0.9690 18 7 8.6240 9.7717 -2.2571 19 14 9.8144 10.7709 0.0365 20 1 11.2354 10.3399 0.0318 21 1 9.7068 12.1283 -0.5561 22 1 9.3102 10.7990 1.4330 23 6 3.4141 1.2713 -0.6387 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 2.6065 0.9610 2.0760 28 1 1.3677 2.2429 1.8687 29 1 3.9451 2.9632 2.1972 30 1 2.9667 3.7930 0.9482 31 1 5.7889 4.3304 0.7271 32 1 6.6744 4.9735 -1.8767 33 1 5.2106 5.9253 -1.5308 34 1 6.2732 6.8121 0.5266 35 1 7.7370 5.8604 0.1808 36 1 8.0219 7.0756 -1.9614 37 1 6.5581 8.0276 -1.6162 38 1 9.0260 10.5437 -2.6852 39 1 3.3591 1.5929 -1.6787 40 1 3.8266 0.2641 -0.5801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:28 Heat of formation + Delta-G solvation = -137.249001 kcal Electronic energy + Delta-G solvation = -18542.653211 eV Core-core repulsion = 15548.224109 eV Total energy + Delta-G solvation = -2994.429103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26154 -39.41037 -37.11178 -36.59511 -35.19972 -33.05547 -30.15316 -29.69382 -28.30754 -26.92174 -25.06319 -22.78859 -22.30875 -21.74713 -20.44239 -18.59616 -18.43233 -17.63663 -16.97329 -16.80719 -16.43662 -16.32751 -15.84999 -15.40506 -15.13854 -14.56800 -14.31161 -14.27029 -13.78394 -13.51159 -13.46062 -12.77607 -12.69268 -12.58426 -12.53168 -12.35342 -12.27462 -12.19906 -11.71885 -11.67024 -11.56305 -11.53625 -11.23813 -10.74626 -10.55905 -10.46662 -10.09769 -8.19845 -6.31538 1.41802 1.43195 1.54155 1.62571 2.19900 2.42636 2.82243 3.13947 3.48682 3.56326 3.76482 4.15420 4.18687 4.21403 4.34049 4.42852 4.46157 4.48148 4.54845 4.55498 4.62569 4.70274 4.87956 4.93681 4.95213 5.00158 5.05320 5.09528 5.16721 5.25778 5.29513 5.46445 5.53631 5.70160 5.83800 6.21668 6.29015 6.59303 6.86314 7.26801 7.38283 8.92329 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.058328 B = 0.002934 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.930196 B = 9539.497425 C = 9769.787076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.080 3.920 4 H 0.061 0.939 5 C -0.135 4.135 6 C -0.110 4.110 7 C -0.101 4.101 8 H 0.129 0.871 9 C 0.510 3.490 10 O -0.590 6.590 11 N -0.712 5.712 12 C 0.128 3.872 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.259 1.259 23 C -0.117 4.117 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.417 0.583 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.068 0.932 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.066 0.934 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -18.213 11.261 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.022 3.978 4 H 0.079 0.921 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.123 4.123 8 H 0.147 0.853 9 C 0.297 3.703 10 O -0.471 6.471 11 N -0.363 5.363 12 C 0.004 3.996 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.183 1.183 23 C -0.155 4.155 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.254 0.746 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.751 -18.254 10.295 25.065 hybrid contribution 0.497 1.161 -0.056 1.264 sum -13.254 -17.093 10.239 23.930 Atomic orbital electron populations 1.22949 0.79834 1.03782 1.00628 1.87865 1.21162 1.27968 1.95133 1.23066 0.94036 0.84149 0.96533 0.92067 1.22943 0.99161 0.99009 0.96176 1.22317 0.96240 0.98134 0.98038 1.21894 1.00670 0.93901 0.95799 0.85287 1.21264 0.77214 0.83267 0.88513 1.90659 1.59565 1.77655 1.19226 1.45961 1.51796 1.24944 1.13616 1.21223 0.97116 0.87895 0.93354 1.21588 0.98628 0.95351 0.98284 1.18953 0.94698 0.93143 0.94721 1.21685 1.31577 1.08585 0.95965 0.91425 1.26047 0.97929 1.00198 0.96056 1.70115 1.46072 1.29881 1.11591 0.85404 0.78819 0.77531 0.79020 1.19824 1.21098 1.18314 1.22129 0.93841 0.99671 0.99837 0.88372 0.92865 0.93991 0.89304 0.89984 0.87504 0.91760 0.74626 0.93485 0.93452 0.91219 0.91286 0.99106 0.99058 0.92820 0.91492 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.87 113.37 1.23 1.55 16 2 O -0.40 -7.89 10.41 -148.98 -1.55 -9.45 16 3 C 0.08 1.50 3.32 31.67 0.11 1.60 16 4 H 0.06 1.20 7.86 -2.39 -0.02 1.19 16 5 C -0.14 -1.84 6.62 31.88 0.21 -1.63 16 6 C -0.11 -1.54 6.27 31.67 0.20 -1.34 16 7 C -0.10 -1.90 3.30 -10.81 -0.04 -1.94 16 8 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 9 C 0.51 14.30 7.00 87.66 0.61 14.91 16 10 O -0.59 -22.40 15.21 -3.04 -0.05 -22.45 16 11 N -0.71 -18.88 5.49 -463.07 -2.54 -21.42 16 12 C 0.13 4.51 5.67 86.38 0.49 5.00 16 13 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 14 C 0.02 1.17 4.97 29.85 0.15 1.32 16 15 C -0.54 -30.01 9.11 25.60 0.23 -29.77 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 18 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 19 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 23 C -0.12 -2.52 6.16 31.32 0.19 -2.32 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.04 0.55 8.11 -2.38 -0.02 0.53 16 27 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.07 7.85 -2.39 -0.02 1.05 16 31 H 0.42 8.03 8.44 -92.71 -0.78 7.24 16 32 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.07 1.86 6.39 -2.39 -0.02 1.84 16 40 H 0.08 1.71 8.07 -2.39 -0.02 1.69 16 Total: -1.00 -71.68 329.74 2.41 -69.27 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.22 Total: 11.53 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 4.01 Total: -16.08 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.26 Total: -78.46 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.60 Total: -31.89 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.68 2.41 -69.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.975 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds