Wall clock time and date at job start Mon Mar 30 2020 05:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99703 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00027 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46971 * 90.00441 * 15 13 11 17 17 H 1.48505 * 109.46977 * 209.99978 * 15 13 11 18 18 H 1.48493 * 109.47395 * 329.99873 * 15 13 11 19 19 C 1.53003 * 109.47189 * 150.00312 * 3 2 1 20 20 C 1.53782 * 113.61490 * 37.49382 * 19 3 2 21 21 C 1.53782 * 87.08025 * 220.02487 * 20 19 3 22 22 C 1.53780 * 87.08352 * 25.43099 * 21 20 19 23 23 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 24 24 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 25 25 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 27 27 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 28 28 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 29 29 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 30 30 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 31 31 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 32 32 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 33 33 H 0.97003 * 120.00173 * 179.97438 * 14 13 11 34 34 H 1.08997 * 112.85111 * 168.80265 * 19 3 2 35 35 H 1.09002 * 113.61351 * 334.57110 * 20 19 3 36 36 H 1.08993 * 113.61360 * 105.47064 * 20 19 3 37 37 H 1.09002 * 113.61060 * 270.88563 * 21 20 19 38 38 H 1.09003 * 113.69191 * 139.99626 * 21 20 19 39 39 H 1.08998 * 113.61343 * 220.02111 * 22 21 20 40 40 H 1.09004 * 113.61425 * 89.11931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.8463 3.4624 -3.0502 9 6 3.3469 4.9082 -3.0522 10 6 3.5489 5.3760 -4.4949 11 6 4.0425 6.7998 -4.4968 12 1 4.1971 7.3190 -3.5626 13 6 4.2968 7.4397 -5.6914 14 7 4.1081 6.8076 -6.8291 15 14 4.9094 9.2044 -5.6937 16 1 6.3940 9.2130 -5.6588 17 1 4.4392 9.8899 -6.9243 18 1 4.3820 9.9131 -4.5002 19 6 3.3589 1.2634 0.7212 20 6 4.1599 -0.0221 0.4551 21 6 4.5529 0.0088 1.9416 22 6 3.2602 0.8051 2.1858 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8418 3.6172 -0.9326 27 1 3.5807 2.8233 -3.5403 28 1 1.8991 3.4047 -3.5864 29 1 2.6128 5.5476 -2.5620 30 1 4.2943 4.9654 -2.5161 31 1 4.2832 4.7365 -4.9847 32 1 2.6018 5.3186 -5.0314 33 1 4.2866 7.2578 -7.6696 34 1 3.9390 2.1765 0.5876 35 1 3.5383 -0.8759 0.1855 36 1 5.0018 0.1204 -0.2222 37 1 5.4607 0.5781 2.1414 38 1 4.5566 -0.9735 2.4141 39 1 3.3759 1.6153 2.9056 40 1 2.3926 0.1774 2.3894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:55 Heat of formation + Delta-G solvation = -83.985783 kcal Electronic energy + Delta-G solvation = -18937.583959 eV Core-core repulsion = 15945.464523 eV Total energy + Delta-G solvation = -2992.119436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37998 -38.43919 -37.01049 -35.30326 -33.33250 -31.44459 -29.73518 -26.89219 -26.21483 -25.69079 -24.03559 -22.70051 -20.74766 -19.99619 -19.50586 -17.39768 -16.85492 -16.48574 -16.19953 -15.40765 -15.16254 -14.92567 -14.51622 -14.41882 -13.82529 -13.62651 -13.14632 -12.58743 -12.40119 -12.28966 -12.02920 -11.86607 -11.70889 -11.58294 -10.91806 -10.77305 -10.77064 -10.64449 -10.58882 -10.50624 -10.34826 -9.88065 -9.61794 -9.19802 -9.01997 -8.77506 -8.38378 -6.02876 -4.06169 2.72795 3.19611 3.29929 3.36365 3.39082 3.68119 4.32320 4.43267 4.50063 4.53163 4.69564 4.85283 5.00076 5.07251 5.22114 5.32864 5.33344 5.45699 5.54267 5.59483 5.70572 5.71548 5.73103 5.76671 5.92175 6.04593 6.14981 6.37108 6.47788 6.58431 6.78429 6.89170 6.99215 7.62236 7.70755 7.74752 7.95739 8.35785 8.40810 9.00518 9.58093 11.08421 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.003553 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.197433 B = 7879.457498 C = 8338.230740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.083 3.917 4 H 0.085 0.915 5 C 0.486 3.514 6 O -0.530 6.530 7 N -0.725 5.725 8 C 0.116 3.884 9 C -0.120 4.120 10 C 0.023 3.977 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.142 4.142 22 C -0.129 4.129 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.397 0.603 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 -11.700 19.084 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.021 3.979 4 H 0.103 0.897 5 C 0.271 3.729 6 O -0.406 6.406 7 N -0.378 5.378 8 C -0.006 4.006 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.129 4.129 20 C -0.165 4.165 21 C -0.180 4.180 22 C -0.167 4.167 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.230 0.770 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.925 -12.415 18.204 22.381 hybrid contribution 0.196 1.617 0.103 1.632 sum -3.729 -10.798 18.307 21.579 Atomic orbital electron populations 1.22850 0.80839 1.03057 1.00010 1.87944 1.19752 1.24961 1.94408 1.21884 0.96796 0.86628 0.92613 0.89713 1.21272 0.77673 0.82100 0.91902 1.90704 1.49988 1.53783 1.46075 1.46254 1.67586 1.13836 1.10113 1.21640 1.01174 0.96961 0.80846 1.21886 0.99763 0.91821 1.02357 1.19031 0.97391 0.96053 0.88946 1.21201 1.44556 0.98001 0.92353 0.92647 1.25034 0.95634 0.98141 0.95664 1.69968 1.48847 1.37115 0.97333 0.86577 0.79040 0.84782 0.77487 1.20644 1.21200 1.19890 1.22729 0.93708 1.00247 0.96266 1.22825 0.99438 0.97918 0.96301 1.22795 0.97534 1.00543 0.97087 1.22897 0.98842 0.99963 0.94949 0.94102 0.93610 0.89351 0.76957 0.91788 0.91876 0.92757 0.92715 0.96271 0.96289 0.92912 0.87643 0.88634 0.91614 0.90294 0.91432 0.91442 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.81 101.05 1.09 1.38 16 2 O -0.35 -4.36 8.00 -55.09 -0.44 -4.80 16 3 C 0.08 0.93 2.52 -27.88 -0.07 0.86 16 4 H 0.09 0.76 7.79 -51.93 -0.40 0.36 16 5 C 0.49 7.38 7.12 -10.98 -0.08 7.30 16 6 O -0.53 -10.42 16.51 -14.30 -0.24 -10.66 16 7 N -0.73 -10.37 5.48 -60.29 -0.33 -10.71 16 8 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 9 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.11 -1.07 3.55 -89.80 -0.32 -1.39 16 20 C -0.13 -1.35 7.48 -25.92 -0.19 -1.54 16 21 C -0.14 -1.18 8.08 -25.92 -0.21 -1.39 16 22 C -0.13 -1.03 7.54 -25.92 -0.20 -1.23 16 23 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.40 4.46 8.34 -40.82 -0.34 4.12 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.11 0.93 7.96 -51.93 -0.41 0.52 16 35 H 0.10 1.15 6.98 -51.93 -0.36 0.78 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.71 7.77 -51.93 -0.40 0.30 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -32.89 332.40 -7.93 -40.82 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.96 Total: -0.61 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.69 Total: -9.36 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.41 Total: -36.82 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.68 Total: -15.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.89 -7.93 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.167 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds