Wall clock time and date at job start Mon Mar 30 2020 05:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99703 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00027 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46971 * 90.00441 * 15 13 11 17 17 H 1.48505 * 109.46977 * 209.99978 * 15 13 11 18 18 H 1.48493 * 109.47395 * 329.99873 * 15 13 11 19 19 C 1.53003 * 109.47189 * 150.00312 * 3 2 1 20 20 C 1.53782 * 113.61490 * 37.49382 * 19 3 2 21 21 C 1.53782 * 87.08025 * 220.02487 * 20 19 3 22 22 C 1.53780 * 87.08352 * 25.43099 * 21 20 19 23 23 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 24 24 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 25 25 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 27 27 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 28 28 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 29 29 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 30 30 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 31 31 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 32 32 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 33 33 H 0.97003 * 120.00173 * 179.97438 * 14 13 11 34 34 H 1.08997 * 112.85111 * 168.80265 * 19 3 2 35 35 H 1.09002 * 113.61351 * 334.57110 * 20 19 3 36 36 H 1.08993 * 113.61360 * 105.47064 * 20 19 3 37 37 H 1.09002 * 113.61060 * 270.88563 * 21 20 19 38 38 H 1.09003 * 113.69191 * 139.99626 * 21 20 19 39 39 H 1.08998 * 113.61343 * 220.02111 * 22 21 20 40 40 H 1.09004 * 113.61425 * 89.11931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.8463 3.4624 -3.0502 9 6 3.3469 4.9082 -3.0522 10 6 3.5489 5.3760 -4.4949 11 6 4.0425 6.7998 -4.4968 12 1 4.1971 7.3190 -3.5626 13 6 4.2968 7.4397 -5.6914 14 7 4.1081 6.8076 -6.8291 15 14 4.9094 9.2044 -5.6937 16 1 6.3940 9.2130 -5.6588 17 1 4.4392 9.8899 -6.9243 18 1 4.3820 9.9131 -4.5002 19 6 3.3589 1.2634 0.7212 20 6 4.1599 -0.0221 0.4551 21 6 4.5529 0.0088 1.9416 22 6 3.2602 0.8051 2.1858 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8418 3.6172 -0.9326 27 1 3.5807 2.8233 -3.5403 28 1 1.8991 3.4047 -3.5864 29 1 2.6128 5.5476 -2.5620 30 1 4.2943 4.9654 -2.5161 31 1 4.2832 4.7365 -4.9847 32 1 2.6018 5.3186 -5.0314 33 1 4.2866 7.2578 -7.6696 34 1 3.9390 2.1765 0.5876 35 1 3.5383 -0.8759 0.1855 36 1 5.0018 0.1204 -0.2222 37 1 5.4607 0.5781 2.1414 38 1 4.5566 -0.9735 2.4141 39 1 3.3759 1.6153 2.9056 40 1 2.3926 0.1774 2.3894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:54 Heat of formation + Delta-G solvation = -105.030669 kcal Electronic energy + Delta-G solvation = -18938.496534 eV Core-core repulsion = 15945.464523 eV Total energy + Delta-G solvation = -2993.032011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40784 -39.45887 -37.89671 -36.85944 -35.20535 -33.17866 -30.82721 -28.47859 -27.17165 -26.43070 -25.34020 -24.11871 -22.34245 -21.32844 -20.24536 -18.67608 -18.36016 -17.73843 -17.29128 -16.59334 -16.49675 -16.24920 -15.99086 -15.55281 -15.11563 -14.64890 -14.29019 -14.06546 -13.77263 -13.55223 -13.29224 -13.09957 -12.80658 -12.75076 -12.55767 -12.42589 -12.34120 -11.74675 -11.68708 -11.48165 -11.46745 -11.25205 -11.22259 -11.06664 -10.56136 -10.23496 -10.12735 -8.19965 -6.31819 1.41870 1.43327 1.54169 1.54368 2.06648 2.42194 2.79287 3.13900 3.51372 3.74143 3.76591 3.94532 4.00216 4.14988 4.18838 4.23551 4.32893 4.51086 4.52858 4.55731 4.79212 4.82987 4.92064 4.93977 4.97010 5.01172 5.13939 5.15029 5.15614 5.34118 5.40855 5.51469 5.65750 5.69073 5.83185 6.01942 6.21242 6.57232 6.85893 7.22847 7.38070 8.92260 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.003553 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.197433 B = 7879.457498 C = 8338.230740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.089 3.911 4 H 0.118 0.882 5 C 0.482 3.518 6 O -0.582 6.582 7 N -0.711 5.711 8 C 0.130 3.870 9 C -0.100 4.100 10 C 0.022 3.978 11 C -0.541 4.541 12 H 0.068 0.932 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.259 1.259 19 C -0.112 4.112 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.116 4.116 23 H 0.070 0.930 24 H 0.025 0.975 25 H 0.099 0.901 26 H 0.416 0.584 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.070 0.930 31 H -0.010 1.010 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -10.323 22.119 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C 0.028 3.972 4 H 0.136 0.864 5 C 0.269 3.731 6 O -0.461 6.461 7 N -0.365 5.365 8 C 0.005 3.995 9 C -0.138 4.138 10 C -0.015 4.015 11 C -0.579 4.579 12 H 0.086 0.914 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.183 1.183 19 C -0.131 4.131 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.153 4.153 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.118 0.882 26 H 0.253 0.747 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.744 -11.025 21.296 24.271 hybrid contribution 0.119 1.116 -0.882 1.428 sum -3.625 -9.908 20.413 22.979 Atomic orbital electron populations 1.23014 0.79707 1.04093 1.00411 1.87943 1.21136 1.25631 1.94215 1.22007 0.98491 0.86957 0.89783 0.86447 1.22164 0.76161 0.81416 0.93333 1.90681 1.52200 1.55159 1.48092 1.46013 1.67139 1.14212 1.09112 1.21214 0.99694 0.95790 0.82765 1.21592 1.01101 0.92638 0.98483 1.18953 0.94970 0.95285 0.92319 1.21684 1.44208 0.99007 0.92964 0.91362 1.26047 0.95786 1.03112 0.95242 1.70119 1.50141 1.39280 0.98120 0.85395 0.78607 0.78828 0.77897 1.19821 1.21118 1.18259 1.22858 0.92593 1.00169 0.97438 1.22844 0.99079 0.98062 0.97909 1.22788 0.98349 1.01215 0.94871 1.22842 0.98415 1.00280 0.93776 0.91156 0.95570 0.88231 0.74667 0.93672 0.93501 0.91126 0.91171 0.99146 0.99075 0.92824 0.86387 0.90604 0.93034 0.89230 0.90947 0.89282 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.81 113.37 1.23 1.66 16 2 O -0.37 -8.76 8.00 -129.99 -1.04 -9.80 16 3 C 0.09 1.85 2.52 29.85 0.08 1.92 16 4 H 0.12 1.69 7.79 -2.39 -0.02 1.67 16 5 C 0.48 14.40 7.12 87.66 0.62 15.03 16 6 O -0.58 -23.55 16.51 15.95 0.26 -23.29 16 7 N -0.71 -19.50 5.48 -463.06 -2.54 -22.04 16 8 C 0.13 4.65 5.67 86.38 0.49 5.14 16 9 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 10 C 0.02 1.17 4.97 29.85 0.15 1.32 16 11 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 12 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 13 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 14 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 15 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 C -0.11 -1.91 3.55 -10.26 -0.04 -1.94 16 20 C -0.14 -2.89 7.48 31.12 0.23 -2.66 16 21 C -0.13 -1.92 8.08 31.12 0.25 -1.67 16 22 C -0.12 -1.46 7.54 31.12 0.23 -1.22 16 23 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 24 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.42 8.19 8.34 -92.71 -0.77 7.42 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.12 1.71 7.96 -2.39 -0.02 1.69 16 35 H 0.08 1.85 6.98 -2.39 -0.02 1.83 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 1.13 7.77 -2.38 -0.02 1.11 16 Total: -1.00 -73.25 332.40 3.33 -69.92 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.23 Total: 12.46 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.10 Total: -15.73 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.25 Total: -79.18 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.78 Total: -33.09 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.25 3.33 -69.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.114 kcal (2) G-P(sol) polarization free energy of solvation -73.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds