Wall clock time and date at job start Mon Mar 30 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00200 * 2 1 4 4 C 1.52997 * 109.47429 * 180.02562 * 3 2 1 5 5 N 1.46501 * 115.54981 * 29.63777 * 4 3 2 6 6 C 1.46497 * 119.99898 * 246.42019 * 5 4 3 7 7 C 1.34778 * 120.00132 * 66.41346 * 5 4 3 8 8 O 1.21279 * 119.99766 * 5.40011 * 7 5 4 9 9 C 1.50702 * 120.00060 * 185.40737 * 7 5 4 10 10 C 1.52999 * 109.46897 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.46591 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46973 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99841 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00283 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00422 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47519 * 119.99763 * 16 14 12 19 19 H 1.48494 * 109.47486 * 240.00120 * 16 14 12 20 20 C 1.52999 * 117.49880 * 243.92831 * 4 3 2 21 21 C 1.52999 * 117.50160 * 175.30388 * 4 3 2 22 22 H 1.09001 * 109.46885 * 299.99735 * 1 2 3 23 23 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47349 * 59.99568 * 1 2 3 25 25 H 1.09004 * 109.47284 * 300.00266 * 3 2 1 26 26 H 1.09003 * 109.47255 * 59.99667 * 3 2 1 27 27 H 1.08999 * 109.47812 * 89.99387 * 6 5 4 28 28 H 1.09002 * 109.46899 * 209.99928 * 6 5 4 29 29 H 1.09005 * 109.47025 * 329.99085 * 6 5 4 30 30 H 1.09004 * 109.46611 * 299.99722 * 9 7 5 31 31 H 1.09000 * 109.47396 * 59.99653 * 9 7 5 32 32 H 1.08998 * 109.46906 * 299.99435 * 10 9 7 33 33 H 1.09001 * 109.47420 * 60.00227 * 10 9 7 34 34 H 1.08998 * 109.47218 * 299.99469 * 11 10 9 35 35 H 1.09000 * 109.47537 * 60.00457 * 11 10 9 36 36 H 0.97001 * 119.99767 * 180.02562 * 15 14 12 37 37 H 1.08993 * 117.49672 * 359.97438 * 20 4 3 38 38 H 1.09003 * 117.49632 * 145.02335 * 20 4 3 39 39 H 1.08994 * 117.50018 * 214.98191 * 21 4 3 40 40 H 1.09003 * 117.49637 * 359.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.0744 -0.0104 -0.6547 6 6 4.7704 -1.0277 0.1369 7 6 3.9298 -0.1738 -1.9847 8 8 3.4414 0.7112 -2.6548 9 6 4.3747 -1.4564 -2.6390 10 6 4.1000 -1.3838 -4.1424 11 6 4.5524 -2.6858 -4.8068 12 6 4.2825 -2.6142 -6.2877 13 1 3.8336 -1.7284 -6.7126 14 6 4.6095 -3.6788 -7.1004 15 7 5.1565 -4.7572 -6.5831 16 14 4.2742 -3.5904 -8.9359 17 1 3.6574 -2.2799 -9.2638 18 1 5.5512 -3.7358 -9.6800 19 1 3.3482 -4.6846 -9.3233 20 6 4.2873 1.7232 1.2182 21 6 4.3465 2.4772 -0.1118 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 1.6886 1.8464 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 4.0521 -1.7676 0.4901 28 1 5.5224 -1.5177 -0.4816 29 1 5.2547 -0.5548 0.9913 30 1 5.4422 -1.5987 -2.4708 31 1 3.8244 -2.2935 -2.2095 32 1 3.0325 -1.2417 -4.3103 33 1 4.6502 -0.5468 -4.5724 34 1 5.6200 -2.8275 -4.6390 35 1 4.0026 -3.5231 -4.3771 36 1 5.3869 -5.5061 -7.1549 37 1 3.6953 2.1640 2.0202 38 1 5.1831 1.1884 1.5337 39 1 5.2811 2.4384 -0.6713 40 1 3.7934 3.4136 -0.1850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597940931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:07 Heat of formation + Delta-G solvation = -84.294840 kcal Electronic energy + Delta-G solvation = -19331.162579 eV Core-core repulsion = 16339.029741 eV Total energy + Delta-G solvation = -2992.132838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22769 -39.10736 -37.81971 -36.10890 -35.03218 -33.86308 -29.77539 -29.27107 -27.60799 -26.43347 -25.90897 -23.41751 -22.89322 -21.42411 -19.57237 -18.47776 -18.07996 -17.44491 -17.23823 -16.85427 -16.51022 -16.36551 -16.06359 -15.21550 -15.07020 -14.59027 -14.19294 -13.88252 -13.79872 -13.57585 -13.35812 -13.14749 -13.08480 -12.64701 -12.50684 -12.41814 -12.33818 -12.24526 -11.70694 -11.57084 -11.45964 -11.25200 -11.23294 -10.76031 -10.55042 -10.40755 -9.56279 -8.20455 -6.30646 1.39136 1.39287 1.53441 1.68808 1.96319 2.41618 2.57464 2.82381 3.12277 3.71802 3.80053 3.89211 4.01465 4.19423 4.20777 4.24452 4.33521 4.41966 4.47704 4.54217 4.60061 4.72032 4.75614 4.78834 4.79947 4.92383 4.96624 5.02154 5.09123 5.16466 5.17769 5.52555 5.69604 5.73949 5.85381 6.19744 6.26488 6.44068 6.84274 7.27975 7.38053 8.91443 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.004140 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.871999 B = 6761.881213 C = 7019.388362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.095 3.905 4 C 0.070 3.930 5 N -0.578 5.578 6 C 0.073 3.927 7 C 0.519 3.481 8 O -0.578 6.578 9 C -0.126 4.126 10 C -0.079 4.079 11 C 0.027 3.973 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.135 4.135 21 C -0.172 4.172 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.002 0.998 35 H -0.001 1.001 36 H 0.265 0.735 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 11.549 21.013 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.017 3.983 4 C -0.016 4.016 5 N -0.310 5.310 6 C -0.068 4.068 7 C 0.309 3.691 8 O -0.458 6.458 9 C -0.165 4.165 10 C -0.117 4.117 11 C -0.010 4.010 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.172 4.172 21 C -0.210 4.210 22 H 0.082 0.918 23 H 0.110 0.890 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.482 11.659 20.638 23.958 hybrid contribution -0.377 -0.081 -1.281 1.338 sum -3.859 11.578 19.357 22.883 Atomic orbital electron populations 1.22868 0.79826 1.03544 1.00530 1.87867 1.20995 1.27993 1.95485 1.22256 0.90455 0.84983 1.00589 1.20839 0.90741 0.87407 1.02630 1.47164 1.56469 1.21212 1.06142 1.22051 0.96979 0.90954 0.96856 1.20975 0.77382 0.88850 0.81915 1.90608 1.46395 1.44837 1.63932 1.21677 1.03695 0.95104 0.96069 1.21138 0.99544 0.98093 0.92918 1.19010 0.95212 0.92445 0.94306 1.21697 1.40724 1.01457 0.94626 0.93180 1.25908 0.94750 0.94898 1.03859 1.70080 1.43468 1.06130 1.37252 0.85430 0.78211 0.78304 0.79302 1.19302 1.19911 1.19979 1.23600 1.02250 1.00612 0.90771 1.23366 1.01527 0.95262 1.00850 0.91823 0.89007 0.94876 0.94718 0.89558 0.92017 0.90204 0.88500 0.87645 0.88344 0.94544 0.94118 0.97975 0.98240 0.92625 0.85159 0.86498 0.89439 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -10.95 10.21 -148.98 -1.52 -12.47 16 3 C 0.09 2.24 5.74 71.98 0.41 2.65 16 4 C 0.07 1.62 1.79 3.60 0.01 1.62 16 5 N -0.58 -15.70 2.58 -799.38 -2.06 -17.76 16 6 C 0.07 1.40 10.12 127.77 1.29 2.69 16 7 C 0.52 18.73 7.50 87.66 0.66 19.39 16 8 O -0.58 -25.35 15.75 -3.03 -0.05 -25.40 16 9 C -0.13 -4.59 4.38 29.85 0.13 -4.46 16 10 C -0.08 -3.71 4.44 30.59 0.14 -3.58 16 11 C 0.03 1.51 4.97 29.85 0.15 1.66 16 12 C -0.55 -33.11 9.11 25.60 0.23 -32.88 16 13 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.00 0.22 5.46 84.65 0.46 0.69 16 15 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 16 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 20 C -0.14 -1.86 9.48 30.59 0.29 -1.57 16 21 C -0.17 -3.39 10.18 30.59 0.31 -3.08 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.09 1.41 7.88 -2.39 -0.02 1.39 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.46 6.48 -2.39 -0.02 1.45 16 29 H 0.10 1.26 5.98 -2.38 -0.01 1.25 16 30 H 0.11 3.39 7.24 -2.38 -0.02 3.37 16 31 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.04 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.13 1.14 8.03 -2.39 -0.02 1.12 16 38 H 0.12 1.30 6.48 -2.39 -0.02 1.28 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.61 332.62 5.00 -71.60 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.99 Total: 8.06 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.33 Total: -15.04 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.78 Total: -74.76 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.57 Total: -37.87 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.61 5.00 -71.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597940931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.693 kcal (2) G-P(sol) polarization free energy of solvation -76.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds