Wall clock time and date at job start Mon Mar 30 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47133 * 2 1 4 4 C 1.42895 * 114.00008 * 174.95213 * 3 2 1 5 5 H 1.09000 * 109.47065 * 342.59991 * 4 3 2 6 6 C 1.50708 * 109.47012 * 222.60297 * 4 3 2 7 7 O 1.21286 * 119.99742 * 355.00090 * 6 4 3 8 8 N 1.34775 * 119.99983 * 174.99601 * 6 4 3 9 9 C 1.47066 * 136.05493 * 180.02562 * 8 6 4 10 10 C 1.53492 * 87.98541 * 152.84704 * 9 8 6 11 11 C 1.50702 * 114.20445 * 139.65147 * 10 9 8 12 12 H 1.07997 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99687 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99888 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99876 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47410 * 59.99961 * 15 13 11 17 17 H 1.48499 * 109.47431 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47331 * 299.99798 * 15 13 11 19 19 C 1.47065 * 136.05826 * 359.95615 * 8 6 4 20 20 C 1.52994 * 109.47735 * 102.60318 * 4 3 2 21 21 C 1.53004 * 109.46935 * 296.36247 * 20 4 3 22 22 C 1.53001 * 109.46924 * 56.35633 * 20 4 3 23 23 H 1.08996 * 109.47240 * 299.99696 * 1 2 3 24 24 H 1.09002 * 109.47439 * 60.00531 * 1 2 3 25 25 H 1.09013 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47161 * 239.99708 * 2 1 3 27 27 H 1.08999 * 109.47235 * 119.99954 * 2 1 3 28 28 H 1.09007 * 113.46515 * 267.62877 * 9 8 6 29 29 H 1.09001 * 113.47168 * 38.06034 * 9 8 6 30 30 H 1.09000 * 114.20580 * 272.47795 * 10 9 8 31 31 H 0.97002 * 119.99487 * 180.02562 * 14 13 11 32 32 H 1.09002 * 113.46603 * 321.92786 * 19 8 6 33 33 H 1.08997 * 113.46724 * 92.37127 * 19 8 6 34 34 H 1.08995 * 109.47920 * 176.35503 * 20 4 3 35 35 H 1.08994 * 109.47316 * 66.75864 * 21 20 4 36 36 H 1.09006 * 109.47117 * 186.76010 * 21 20 4 37 37 H 1.09002 * 109.46896 * 306.75288 * 21 20 4 38 38 H 1.08998 * 109.47437 * 59.99876 * 22 20 4 39 39 H 1.09001 * 109.47372 * 180.02562 * 22 20 4 40 40 H 1.09007 * 109.46957 * 300.00235 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4260 1.4618 0.1149 5 1 3.8375 0.5229 0.4853 6 6 3.7643 2.5723 1.0759 7 8 2.8815 3.2626 1.5399 8 7 5.0477 2.7983 1.4197 9 6 5.7594 3.7452 2.2914 10 6 6.8555 2.6838 2.4584 11 6 8.2576 3.2358 2.4436 12 1 8.4190 4.2969 2.3229 13 6 9.3345 2.3863 2.5840 14 7 9.1380 1.0942 2.7304 15 14 11.0725 3.0707 2.5663 16 1 11.2338 4.0412 3.6787 17 1 12.0437 1.9599 2.7346 18 1 11.3219 3.7550 1.2722 19 6 6.3526 2.2059 1.0893 20 6 4.0252 1.7750 -1.2576 21 6 3.7598 0.6062 -2.2087 22 6 3.3809 3.0447 -1.8176 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0278 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0988 4.6418 1.7726 29 1 5.2269 3.9687 3.2159 30 1 6.6757 1.9797 3.2710 31 1 9.8956 0.4966 2.8296 32 1 6.3244 1.1206 0.9920 33 1 6.8501 2.6922 0.2503 34 1 5.1001 1.9262 -1.1589 35 1 2.6897 0.5308 -2.4019 36 1 4.2875 0.7746 -3.1474 37 1 4.1131 -0.3194 -1.7543 38 1 3.5699 3.8773 -1.1401 39 1 3.8075 3.2676 -2.7956 40 1 2.3059 2.8934 -1.9164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600097839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:17 Heat of formation + Delta-G solvation = -61.297769 kcal Electronic energy + Delta-G solvation = -19843.091641 eV Core-core repulsion = 16851.956031 eV Total energy + Delta-G solvation = -2991.135610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93073 -38.30773 -36.61940 -34.71919 -32.69610 -31.13482 -29.53237 -27.15915 -26.84215 -25.01358 -24.64503 -22.72806 -21.00908 -19.98394 -18.33125 -16.88292 -16.70154 -16.32086 -15.91699 -15.11289 -14.78380 -14.44493 -14.25767 -13.90625 -13.34700 -12.88796 -12.68867 -12.45096 -12.33048 -12.11720 -12.05723 -11.88831 -11.56884 -11.34324 -11.31569 -11.06512 -10.96318 -10.87093 -10.83605 -10.56994 -10.35411 -9.75209 -9.42987 -9.21194 -8.79523 -8.58967 -7.86258 -6.20736 -4.26322 3.10635 3.23642 3.25282 3.29442 3.33259 4.07101 4.31868 4.79858 4.84347 4.99163 5.04262 5.09531 5.18994 5.26353 5.34817 5.45762 5.59749 5.68063 5.77466 5.87390 5.90183 5.96050 6.01720 6.08891 6.12067 6.17090 6.25417 6.32600 6.43251 6.47578 6.52915 6.61902 6.78492 7.25752 7.52682 7.77063 8.15732 8.51881 8.77448 8.80035 9.40626 10.89012 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.030929 B = 0.004939 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.087809 B = 5667.420459 C = 5804.674677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.085 3.915 5 H 0.082 0.918 6 C 0.531 3.469 7 O -0.546 6.546 8 N -0.643 5.643 9 C 0.102 3.898 10 C 0.035 3.965 11 C -0.518 4.518 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.098 3.902 20 C -0.108 4.108 21 C -0.146 4.146 22 C -0.139 4.139 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.265 0.735 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 -3.625 -8.341 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.271 6.271 4 C 0.024 3.976 5 H 0.100 0.900 6 C 0.319 3.681 7 O -0.425 6.425 8 N -0.379 5.379 9 C -0.020 4.020 10 C 0.016 3.984 11 C -0.556 4.556 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.025 4.025 20 C -0.127 4.127 21 C -0.203 4.203 22 C -0.196 4.196 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.103 -3.331 -8.150 13.401 hybrid contribution 1.205 -0.056 -0.079 1.209 sum -8.898 -3.387 -8.230 12.585 Atomic orbital electron populations 1.21716 0.93792 1.01882 1.03223 1.22682 0.95676 0.84186 1.00131 1.87994 1.19340 1.25709 1.94049 1.21894 0.82991 0.97982 0.94733 0.89985 1.19955 0.81237 0.85327 0.81546 1.90644 1.46470 1.49903 1.55457 1.49978 1.04386 1.36633 1.46897 1.23335 0.91466 0.94866 0.92339 1.20340 0.92580 0.92785 0.92710 1.20875 0.89472 0.93990 1.51241 0.91847 1.25019 0.99456 0.94812 0.94150 1.69940 1.31556 1.02573 1.48255 0.86595 0.83647 0.78601 0.78832 1.20028 1.21224 1.20046 1.23622 0.78585 0.97775 1.02502 1.21517 1.00809 0.96865 0.93493 1.21879 1.01911 0.97331 0.99161 1.21692 1.01288 0.96473 1.00156 0.91748 0.91940 0.91315 0.93052 0.93453 0.90880 0.92475 0.91377 0.92572 0.92344 0.90712 0.89492 0.92195 0.92216 0.92730 0.92762 0.92881 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.05 0.61 6.12 37.16 0.23 0.84 16 3 O -0.35 -5.73 8.43 -55.09 -0.46 -6.20 16 4 C 0.09 1.41 2.22 -27.88 -0.06 1.35 16 5 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 6 C 0.53 10.90 6.34 -10.98 -0.07 10.83 16 7 O -0.55 -13.08 17.28 -14.31 -0.25 -13.32 16 8 N -0.64 -13.22 3.65 -185.23 -0.68 -13.89 16 9 C 0.10 2.14 8.18 -8.51 -0.07 2.07 16 10 C 0.04 0.81 3.78 -91.27 -0.35 0.47 16 11 C -0.52 -12.99 8.82 -34.44 -0.30 -13.30 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -23.75 13.26 55.43 0.74 -23.01 16 15 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 19 C 0.10 2.01 6.65 -8.51 -0.06 1.95 16 20 C -0.11 -1.54 2.72 -90.62 -0.25 -1.79 16 21 C -0.15 -1.65 8.05 37.16 0.30 -1.35 16 22 C -0.14 -2.00 8.81 37.16 0.33 -1.68 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.05 0.54 6.23 -51.93 -0.32 0.22 16 27 H 0.05 0.57 8.02 -51.93 -0.42 0.16 16 28 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 34 H 0.09 1.30 6.76 -51.93 -0.35 0.94 16 35 H 0.06 0.65 6.84 -51.93 -0.36 0.30 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.90 7.33 -51.93 -0.38 0.52 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.93 7.59 -51.93 -0.39 0.53 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -29.13 326.84 -7.57 -36.70 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.80 Total: 0.12 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.01 Total: -0.09 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.06 Total: -36.90 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.71 Total: -19.52 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.13 -7.57 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600097839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.601 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds