Wall clock time and date at job start Mon Mar 30 2020 03:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47034 * 2 1 4 4 C 1.46496 * 120.00053 * 267.27620 * 3 2 1 5 5 C 1.50694 * 109.47421 * 270.00294 * 4 3 2 6 6 H 1.08003 * 119.99883 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00610 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99397 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00509 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46997 * 89.99688 * 9 7 5 11 11 H 1.48495 * 109.47528 * 210.00064 * 9 7 5 12 12 H 1.48505 * 109.47051 * 330.00365 * 9 7 5 13 13 C 1.34771 * 120.00122 * 87.27869 * 3 2 1 14 14 O 1.21284 * 120.00339 * 5.12393 * 13 3 2 15 15 C 1.50704 * 120.00205 * 185.12138 * 13 3 2 16 16 H 1.08999 * 110.55975 * 36.87957 * 15 13 3 17 17 C 1.54506 * 110.51105 * 274.19867 * 15 13 3 18 18 C 1.54480 * 104.06214 * 241.35297 * 17 15 13 19 19 H 1.08997 * 110.37289 * 94.85218 * 18 17 15 20 20 C 1.53002 * 110.46521 * 217.14389 * 18 17 15 21 21 O 1.44430 * 104.80290 * 336.02225 * 18 17 15 22 22 C 1.44429 * 105.27361 * 40.51357 * 21 18 17 23 23 H 1.08994 * 110.36973 * 78.32162 * 22 21 18 24 24 C 1.53005 * 110.36794 * 200.65902 * 22 21 18 25 25 H 1.08997 * 109.47449 * 175.72633 * 1 2 3 26 26 H 1.09007 * 109.47141 * 295.72317 * 1 2 3 27 27 H 1.08996 * 109.47037 * 55.72437 * 1 2 3 28 28 H 1.08995 * 109.46950 * 240.00035 * 2 1 3 29 29 H 1.09000 * 109.46852 * 120.00003 * 2 1 3 30 30 H 1.09009 * 109.47129 * 30.00140 * 4 3 2 31 31 H 1.09003 * 109.47329 * 149.99633 * 4 3 2 32 32 H 0.96996 * 119.99484 * 180.02562 * 8 7 5 33 33 H 1.09005 * 110.51266 * 122.71222 * 17 15 13 34 34 H 1.08998 * 110.62885 * 0.05435 * 17 15 13 35 35 H 1.09002 * 109.47013 * 176.88841 * 20 18 17 36 36 H 1.08990 * 109.47203 * 296.88699 * 20 18 17 37 37 H 1.09000 * 109.47093 * 56.89466 * 20 18 17 38 38 H 1.08992 * 109.47308 * 58.54302 * 24 22 21 39 39 H 1.09001 * 109.46352 * 178.55076 * 24 22 21 40 40 H 1.08999 * 109.46363 * 298.54180 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3193 2.0517 -1.2673 5 6 3.7605 1.8086 -1.6344 6 1 4.3895 1.2144 -0.9881 7 6 4.2762 2.3447 -2.7953 8 7 3.5101 3.0679 -3.5826 9 14 6.0628 2.0439 -3.2500 10 1 6.1640 0.8093 -4.0690 11 1 6.5765 3.1986 -4.0296 12 1 6.8684 1.8843 -2.0126 13 6 2.1907 2.0350 1.1658 14 8 2.0312 1.4521 2.2174 15 6 2.5817 3.4905 1.1629 16 1 2.0912 4.0169 0.3442 17 6 4.1162 3.6386 1.0598 18 6 4.5112 4.3680 2.3630 19 1 4.8092 3.6482 3.1254 20 6 5.6444 5.3612 2.0978 21 8 3.3153 5.0671 2.7717 22 6 2.2311 4.1478 2.5162 23 1 2.1794 3.3943 3.3021 24 6 0.9049 4.9038 2.4134 25 1 -0.3634 -1.0248 -0.0766 26 1 -0.3634 0.4461 0.9259 27 1 -0.3633 0.5787 -0.8492 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6730 1.6554 -2.0505 31 1 2.1470 3.1228 -1.1615 32 1 3.8728 3.4447 -4.3994 33 1 4.3844 4.2385 0.1901 34 1 4.5939 2.6602 1.0099 35 1 5.8725 5.9054 3.0142 36 1 6.5309 4.8208 1.7659 37 1 5.3371 6.0650 1.3243 38 1 0.9685 5.6420 1.6141 39 1 0.1016 4.2001 2.1952 40 1 0.6999 5.4077 3.3580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:25 Heat of formation + Delta-G solvation = -98.585817 kcal Electronic energy + Delta-G solvation = -20463.646029 eV Core-core repulsion = 17470.893488 eV Total energy + Delta-G solvation = -2992.752541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06601 -38.14681 -35.23452 -32.90909 -32.44040 -32.06508 -30.26637 -28.48704 -27.05187 -24.44555 -23.07080 -22.76092 -20.99839 -20.63083 -18.31147 -16.69146 -16.50458 -15.94561 -15.25664 -14.99858 -14.93384 -14.37019 -13.91514 -13.41618 -13.12429 -12.80455 -12.73820 -12.41161 -12.19441 -12.00619 -11.74033 -11.69089 -11.65264 -11.46606 -11.25740 -10.99250 -10.85723 -10.76399 -10.50776 -10.39537 -10.24610 -10.06228 -9.75276 -9.37731 -8.96830 -8.57454 -7.75713 -6.21734 -4.28486 3.19106 3.26692 3.27931 3.34694 3.85508 4.15448 4.30706 5.03146 5.07015 5.12561 5.27166 5.29768 5.54190 5.54848 5.62097 5.68391 5.77082 5.79148 5.85678 5.86145 5.91768 6.08689 6.18206 6.23513 6.32153 6.32856 6.39030 6.45864 6.50083 6.60908 6.68718 6.77758 7.15437 7.24551 7.51039 7.73094 8.02356 8.30256 8.75220 8.97166 9.38844 10.85072 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.009654 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.405529 B = 2899.523607 C = 4187.558356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.593 5.593 4 C 0.236 3.764 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.526 3.474 14 O -0.575 6.575 15 C -0.131 4.131 16 H 0.106 0.894 17 C -0.119 4.119 18 C 0.069 3.931 19 H 0.064 0.936 20 C -0.143 4.143 21 O -0.373 6.373 22 C 0.081 3.919 23 H 0.085 0.915 24 C -0.143 4.143 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 1.479 6.967 7.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.323 5.323 4 C 0.116 3.884 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.314 3.686 14 O -0.457 6.457 15 C -0.152 4.152 16 H 0.124 0.876 17 C -0.157 4.157 18 C 0.011 3.989 19 H 0.082 0.918 20 C -0.201 4.201 21 O -0.293 6.293 22 C 0.024 3.976 23 H 0.103 0.897 24 C -0.200 4.200 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.766 1.493 7.376 7.730 hybrid contribution 1.016 -0.392 -0.766 1.331 sum -0.750 1.101 6.610 6.743 Atomic orbital electron populations 1.22115 0.96880 1.01294 1.01878 1.21237 0.93331 0.83910 1.02470 1.48243 1.62700 1.13319 1.07999 1.19474 0.96435 0.93239 0.79246 1.21433 0.95720 1.33143 1.06836 0.92179 1.24914 0.97992 0.94798 0.95994 1.69920 1.35969 1.33794 1.13189 0.86567 0.84750 0.77919 0.78713 1.20568 1.21032 1.19707 1.20165 0.76350 0.88629 0.83454 1.90567 1.54284 1.69272 1.31588 1.22588 0.98654 0.94244 0.99761 0.87619 1.22779 0.92764 1.02163 0.98016 1.23015 0.86651 0.93722 0.95499 0.91791 1.21781 0.96969 0.99251 1.02059 1.89058 1.15499 1.39217 1.85528 1.22933 0.87868 0.91276 0.95563 0.89704 1.21775 0.95216 1.00571 1.02416 0.92378 0.92909 0.92549 0.90425 0.91210 0.94727 0.94273 0.92520 0.89188 0.90063 0.92362 0.91229 0.91686 0.91853 0.91395 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.23 37.16 0.38 -2.18 16 2 C 0.11 2.09 6.14 -4.04 -0.02 2.07 16 3 N -0.59 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.24 5.44 4.98 -5.20 -0.03 5.42 16 5 C -0.53 -13.32 8.72 -34.44 -0.30 -13.62 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -23.91 13.29 55.43 0.74 -23.17 16 9 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.53 10.91 6.67 -10.99 -0.07 10.83 16 14 O -0.58 -12.84 15.15 5.55 0.08 -12.76 16 15 C -0.13 -2.47 2.20 -90.20 -0.20 -2.67 16 16 H 0.11 2.03 6.08 -51.93 -0.32 1.71 16 17 C -0.12 -2.20 5.54 -25.16 -0.14 -2.34 16 18 C 0.07 1.12 3.92 -25.95 -0.10 1.02 16 19 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 20 C -0.14 -1.98 9.53 37.16 0.35 -1.62 16 21 O -0.37 -6.53 11.04 -35.23 -0.39 -6.92 16 22 C 0.08 1.41 3.40 -25.95 -0.09 1.32 16 23 H 0.09 1.57 6.81 -51.93 -0.35 1.22 16 24 C -0.14 -2.08 9.52 37.16 0.35 -1.73 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 29 H 0.07 1.30 7.44 -51.93 -0.39 0.91 16 30 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 31 H 0.04 0.94 5.88 -51.93 -0.31 0.63 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.09 1.72 7.87 -51.93 -0.41 1.31 16 34 H 0.08 1.61 7.73 -51.93 -0.40 1.21 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 38 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -27.76 324.53 -6.87 -34.63 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.78 Total: 2.94 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.31 Total: -35.93 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.30 Total: -19.68 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.76 -6.87 -34.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.952 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds