Wall clock time and date at job start Mon Mar 30 2020 04:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 119.99885 * 2 1 4 4 C 1.50693 * 120.00206 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47278 * 275.00530 * 4 2 1 6 6 O 1.42904 * 109.47207 * 35.00196 * 4 2 1 7 7 C 1.52993 * 109.47502 * 155.00473 * 4 2 1 8 8 N 1.46900 * 109.47574 * 173.95313 * 7 4 2 9 9 C 1.46846 * 111.00318 * 201.53237 * 8 7 4 10 10 C 1.53031 * 109.52462 * 174.15794 * 9 8 7 11 11 C 1.53120 * 109.27910 * 59.18168 * 10 9 8 12 12 C 1.53128 * 109.15950 * 302.34432 * 11 10 9 13 13 H 1.08999 * 109.52923 * 297.69375 * 12 11 10 14 14 C 1.50694 * 109.50507 * 177.59466 * 12 11 10 15 15 H 1.08001 * 120.00252 * 240.19821 * 14 12 11 16 16 C 1.37881 * 119.99869 * 60.19682 * 14 12 11 17 17 N 1.31513 * 120.00039 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00088 * 359.97438 * 16 14 12 19 19 H 1.48494 * 109.47244 * 270.00105 * 18 16 14 20 20 H 1.48507 * 109.47040 * 150.00111 * 18 16 14 21 21 H 1.48500 * 109.47046 * 30.00496 * 18 16 14 22 22 C 1.46846 * 110.99816 * 77.31901 * 8 7 4 23 23 H 1.08997 * 109.47161 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47604 * 300.01167 * 1 2 3 25 25 H 1.09011 * 109.47009 * 60.00600 * 1 2 3 26 26 H 1.09001 * 109.46708 * 294.70083 * 5 4 2 27 27 H 1.09001 * 109.46975 * 54.69554 * 5 4 2 28 28 H 1.09000 * 109.47199 * 174.69998 * 5 4 2 29 29 H 0.96705 * 113.99641 * 59.99808 * 6 4 2 30 30 H 1.09001 * 109.47070 * 53.94935 * 7 4 2 31 31 H 1.09005 * 109.46726 * 293.95034 * 7 4 2 32 32 H 1.09000 * 109.46067 * 294.17704 * 9 8 7 33 33 H 1.09001 * 109.46324 * 54.14897 * 9 8 7 34 34 H 1.08997 * 109.50514 * 179.11744 * 10 9 8 35 35 H 1.08994 * 109.50870 * 299.23850 * 10 9 8 36 36 H 1.08998 * 109.52815 * 182.44373 * 11 10 9 37 37 H 1.09004 * 109.52720 * 62.24458 * 11 10 9 38 38 H 0.96997 * 120.00095 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46580 * 65.82763 * 22 8 7 40 40 H 1.08998 * 109.46640 * 305.85542 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 2.4066 -1.8090 1.4378 6 8 1.5430 -2.2697 -0.7718 7 6 3.6477 -1.0933 -0.6090 8 7 4.4340 -2.3271 -0.4773 9 6 5.8728 -2.0461 -0.5635 10 6 6.6619 -3.3257 -0.2779 11 6 6.2706 -4.3991 -1.2974 12 6 4.7601 -4.6384 -1.2206 13 1 4.5002 -5.0117 -0.2301 14 6 4.3575 -5.6509 -2.2616 15 1 3.6488 -5.3819 -3.0309 16 6 4.8939 -6.9207 -2.2318 17 7 4.5430 -7.8043 -3.1406 18 14 6.1202 -7.3857 -0.9017 19 1 7.4967 -7.0840 -1.3700 20 1 6.0045 -8.8367 -0.6071 21 1 5.8342 -6.6064 0.3296 22 6 4.0261 -3.3205 -1.4789 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 3.0334 -1.1191 2.0028 27 1 1.4228 -1.8701 1.9031 28 1 2.8675 -2.7967 1.4314 29 1 1.4128 -2.0157 -1.6958 30 1 4.1543 -0.2820 -0.0862 31 1 3.5459 -0.8382 -1.6639 32 1 6.1133 -1.6867 -1.5641 33 1 6.1386 -1.2844 0.1695 34 1 7.7294 -3.1204 -0.3574 35 1 6.4324 -3.6781 0.7277 36 1 6.7981 -5.3258 -1.0713 37 1 6.5357 -4.0633 -2.3000 38 1 4.9206 -8.6975 -3.1199 39 1 4.2752 -2.9553 -2.4751 40 1 2.9507 -3.4845 -1.4107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000661155656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:53 Heat of formation + Delta-G solvation = -106.741233 kcal Electronic energy + Delta-G solvation = -20318.445893 eV Core-core repulsion = 17325.339706 eV Total energy + Delta-G solvation = -2993.106186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32950 -39.78329 -37.89531 -35.46113 -33.91270 -32.23693 -31.94551 -30.64332 -27.68076 -26.81825 -24.86734 -23.15354 -22.66198 -20.63504 -20.40323 -18.83820 -18.18967 -17.05826 -16.92381 -16.62938 -16.00102 -15.84113 -15.54935 -15.25145 -14.84467 -14.65865 -14.36688 -14.05345 -13.70304 -13.37117 -13.22822 -13.11384 -13.04228 -12.89185 -12.85745 -12.71907 -12.44106 -12.15756 -11.93705 -11.71751 -11.61367 -11.32828 -10.96855 -10.79808 -10.61701 -10.10519 -9.16204 -8.27555 -6.29738 0.79622 1.30711 1.37178 1.48244 2.34891 2.67803 3.08681 3.21180 3.30871 3.78694 3.92926 4.06705 4.10788 4.19036 4.28810 4.47287 4.55295 4.58500 4.66945 4.67952 4.74814 4.80287 4.85734 4.92603 4.95517 5.00563 5.13021 5.15303 5.16834 5.25829 5.42405 5.56090 5.66759 5.78688 6.18889 6.20037 6.35869 6.39491 6.74022 6.77683 7.35640 8.89349 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.006134 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.425165 B = 4563.896208 C = 5039.887791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.346 3.654 3 O -0.484 6.484 4 C 0.097 3.903 5 C -0.120 4.120 6 O -0.542 6.542 7 C 0.039 3.961 8 N -0.532 5.532 9 C 0.060 3.940 10 C -0.112 4.112 11 C -0.124 4.124 12 C 0.022 3.978 13 H 0.023 0.977 14 C -0.513 4.513 15 H 0.034 0.966 16 C 0.013 3.987 17 N -0.951 5.951 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.300 1.300 21 H -0.248 1.248 22 C 0.077 3.923 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.386 0.614 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.025 0.975 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.006 0.994 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 15.988 8.996 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.222 3.778 3 O -0.360 6.360 4 C 0.054 3.946 5 C -0.178 4.178 6 O -0.349 6.349 7 C -0.090 4.090 8 N -0.256 5.256 9 C -0.068 4.068 10 C -0.150 4.150 11 C -0.162 4.162 12 C 0.002 3.998 13 H 0.041 0.959 14 C -0.551 4.551 15 H 0.052 0.948 16 C -0.184 4.184 17 N -0.592 5.592 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.228 1.228 21 H -0.172 1.172 22 C -0.050 4.050 23 H 0.118 0.882 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.236 0.764 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.759 15.871 9.963 19.113 hybrid contribution 0.725 -0.287 -1.479 1.671 sum -3.034 15.584 8.485 18.002 Atomic orbital electron populations 1.22229 0.91236 1.06485 1.05676 1.25823 0.94101 0.89415 0.68440 1.90392 1.72985 1.35756 1.36829 1.21811 0.89819 0.87636 0.95311 1.21505 1.02717 1.03022 0.90522 1.86678 1.76755 1.45125 1.26349 1.22569 0.94813 0.92464 0.99146 1.61879 1.03953 1.09437 1.50317 1.22113 0.87399 0.97433 0.99835 1.21603 0.99543 0.94713 0.99119 1.21952 0.98301 0.97392 0.98558 1.19053 0.92036 0.93100 0.95571 0.95893 1.21333 1.24964 0.96386 1.12447 0.94771 1.25811 0.98489 0.96346 0.97742 1.70045 1.46338 1.05750 1.37097 0.85824 0.79436 0.75932 0.81102 1.19621 1.22833 1.17206 1.22171 1.01490 0.91056 0.90321 0.88201 0.87655 0.87745 0.90643 0.90826 0.91079 0.76432 0.89156 0.94804 0.95634 0.89029 0.90152 0.91675 0.94891 0.93649 0.92697 0.97609 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 10.12 71.24 0.72 -2.02 16 2 C 0.35 7.15 6.19 29.10 0.18 7.33 16 3 O -0.48 -12.82 16.71 -1.44 -0.02 -12.85 16 4 C 0.10 2.26 1.03 -11.54 -0.01 2.25 16 5 C -0.12 -2.78 8.50 71.98 0.61 -2.17 16 6 O -0.54 -13.36 9.12 -148.98 -1.36 -14.71 16 7 C 0.04 1.03 3.99 86.30 0.34 1.38 16 8 N -0.53 -16.99 3.66 -896.38 -3.28 -20.27 16 9 C 0.06 1.77 5.42 86.32 0.47 2.24 16 10 C -0.11 -3.64 6.09 30.64 0.19 -3.46 16 11 C -0.12 -5.26 4.74 30.68 0.15 -5.12 16 12 C 0.02 1.01 1.85 -11.48 -0.02 0.99 16 13 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 14 C -0.51 -29.49 9.14 25.60 0.23 -29.25 16 15 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 16 C 0.01 0.75 5.45 84.66 0.46 1.21 16 17 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 18 Si 0.95 46.17 24.36 68.60 1.67 47.84 16 19 H -0.27 -12.54 6.89 99.48 0.69 -11.85 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 22 C 0.08 3.03 4.43 86.33 0.38 3.41 16 23 H 0.10 1.30 7.27 -2.39 -0.02 1.28 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 2.02 7.64 -2.39 -0.02 2.01 16 29 H 0.39 7.41 9.00 -74.05 -0.67 6.74 16 30 H 0.09 2.32 7.27 -2.39 -0.02 2.30 16 31 H 0.03 0.92 7.98 -2.38 -0.02 0.90 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 2.22 7.92 -2.39 -0.02 2.20 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.46 3.37 -2.39 -0.01 1.46 16 37 H 0.04 1.96 8.14 -2.38 -0.02 1.95 16 38 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.09 3.72 5.24 -2.39 -0.01 3.71 16 Total: -1.00 -69.52 307.72 1.29 -68.23 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.28 Total: 14.91 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.70 Total: -23.21 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.98 Total: -80.21 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.38 Total: -27.56 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.67 Total: 47.84 kcal Total: -69.52 1.29 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661155656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.512 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds