Wall clock time and date at job start Mon Mar 30 2020 04:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99918 * 2 1 4 4 H 1.08999 * 109.54194 * 34.82651 * 3 2 1 5 5 C 1.53179 * 109.54488 * 274.55241 * 3 2 1 6 6 C 1.53089 * 109.16407 * 183.15094 * 5 3 2 7 7 O 1.42898 * 109.41416 * 57.61174 * 6 5 3 8 8 C 1.42900 * 114.09992 * 298.84334 * 7 6 5 9 9 C 1.53095 * 109.41605 * 61.15483 * 8 7 6 10 10 H 1.09001 * 109.57024 * 62.32998 * 9 8 7 11 11 O 1.42901 * 109.52172 * 182.48507 * 9 8 7 12 12 C 1.42898 * 114.00239 * 275.07389 * 11 9 8 13 13 C 1.53000 * 109.47073 * 184.02866 * 12 11 9 14 14 C 1.50699 * 115.56377 * 39.64918 * 13 12 11 15 15 H 1.07994 * 120.00334 * 266.92431 * 14 13 12 16 16 C 1.37881 * 119.99807 * 86.92220 * 14 13 12 17 17 N 1.31510 * 120.00195 * 182.38372 * 16 14 13 18 18 Si 1.86803 * 119.99912 * 2.38031 * 16 14 13 19 19 H 1.48499 * 109.47074 * 87.72889 * 18 16 14 20 20 H 1.48501 * 109.46991 * 207.72915 * 18 16 14 21 21 H 1.48503 * 109.47339 * 327.72725 * 18 16 14 22 22 C 1.52996 * 117.49878 * 185.34251 * 13 12 11 23 23 C 1.52988 * 60.00420 * 107.48773 * 22 13 12 24 24 H 1.09005 * 109.47061 * 60.00325 * 1 2 3 25 25 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46976 * 300.00051 * 1 2 3 27 27 H 1.00907 * 111.00188 * 236.04567 * 2 1 3 28 28 H 1.08994 * 109.52706 * 303.06208 * 5 3 2 29 29 H 1.09004 * 109.51600 * 63.18473 * 5 3 2 30 30 H 1.09004 * 109.48200 * 177.59665 * 6 5 3 31 31 H 1.09001 * 109.47990 * 297.62048 * 6 5 3 32 32 H 1.09003 * 109.48097 * 301.17473 * 8 7 6 33 33 H 1.09003 * 109.48289 * 181.13789 * 8 7 6 34 34 H 1.08996 * 109.46887 * 64.03082 * 12 11 9 35 35 H 1.08994 * 109.47407 * 304.03102 * 12 11 9 36 36 H 0.96994 * 120.00264 * 179.97438 * 17 16 14 37 37 H 1.09005 * 117.49986 * 359.97438 * 22 13 12 38 38 H 1.09000 * 117.50285 * 214.98168 * 22 13 12 39 39 H 1.09001 * 117.50437 * 107.48536 * 23 22 13 40 40 H 1.08998 * 117.50157 * 252.50975 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3389 2.0140 0.5866 5 6 2.0721 1.8909 -1.4390 6 6 2.6946 3.2895 -1.4359 7 8 3.9864 3.2331 -0.8275 8 6 3.9717 2.7993 0.5340 9 6 3.4004 1.3809 0.6100 10 1 4.0434 0.6981 0.0546 11 8 3.3309 0.9668 1.9759 12 6 4.5481 0.4112 2.4776 13 6 4.3301 -0.0867 3.9078 14 6 3.0097 -0.7657 4.1658 15 1 2.1713 -0.1938 4.5349 16 6 2.8720 -2.1174 3.9306 17 7 1.7074 -2.7009 4.1110 18 14 4.3399 -3.1196 3.3558 19 1 5.0999 -3.6057 4.5353 20 1 3.8656 -4.2802 2.5598 21 1 5.2210 -2.2698 2.5151 22 6 5.5517 -0.6050 4.6693 23 6 4.9319 0.7426 5.0440 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8307 -0.5262 -0.7814 28 1 2.6884 1.2192 -2.0364 29 1 1.0690 1.9386 -1.8628 30 1 2.7910 3.6468 -2.4612 31 1 2.0566 3.9701 -0.8721 32 1 3.3505 3.4734 1.1237 33 1 4.9881 2.8033 0.9278 34 1 5.3251 1.1755 2.4735 35 1 4.8548 -0.4221 1.8456 36 1 1.6104 -3.6517 3.9452 37 1 6.5107 -0.5916 4.1513 38 1 5.4005 -1.4371 5.3569 39 1 4.3727 0.7972 5.9781 40 1 5.4830 1.6430 4.7726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686574475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:47 Heat of formation + Delta-G solvation = -55.643196 kcal Electronic energy + Delta-G solvation = -20314.973297 eV Core-core repulsion = 17324.082887 eV Total energy + Delta-G solvation = -2990.890409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.66272 -37.42983 -36.10902 -35.34616 -31.86892 -31.20500 -29.95760 -26.39574 -25.61557 -24.94161 -23.01113 -22.68246 -21.57645 -20.36109 -18.87959 -16.75538 -16.43788 -16.16740 -15.46096 -15.29576 -14.90250 -14.66007 -14.39351 -13.72810 -13.59636 -13.40031 -13.02565 -12.54497 -12.46092 -12.34357 -11.94008 -11.58829 -11.47621 -11.17931 -11.08844 -10.95931 -10.68541 -10.37369 -10.08717 -9.92339 -9.84301 -9.44119 -9.04479 -8.61229 -8.35434 -8.27095 -7.96998 -5.89515 -3.87707 3.39687 3.48144 3.51090 3.76350 4.28542 4.39520 4.58797 4.82240 4.90459 4.93869 5.13790 5.22670 5.32340 5.39261 5.46264 5.54726 5.61703 5.66777 5.77002 5.81150 5.84069 5.93118 6.07967 6.09714 6.14792 6.21810 6.29676 6.35841 6.50125 6.56330 6.77696 7.08214 7.14520 7.19600 7.31848 7.68700 7.88704 8.17938 8.72914 9.15489 9.74522 11.23613 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.007829 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.653790 B = 3575.369809 C = 4363.360214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.666 5.666 3 C 0.095 3.905 4 H 0.085 0.915 5 C -0.184 4.184 6 C 0.064 3.936 7 O -0.382 6.382 8 C 0.037 3.963 9 C 0.066 3.934 10 H 0.058 0.942 11 O -0.324 6.324 12 C 0.099 3.901 13 C 0.005 3.995 14 C -0.459 4.459 15 H 0.077 0.923 16 C 0.081 3.919 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.283 1.283 20 H -0.298 1.298 21 H -0.264 1.264 22 C -0.202 4.202 23 C -0.180 4.180 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.334 0.666 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 9.211 -11.016 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.294 5.294 3 C -0.016 4.016 4 H 0.103 0.897 5 C -0.224 4.224 6 C -0.014 4.014 7 O -0.301 6.301 8 C -0.041 4.041 9 C 0.006 3.994 10 H 0.076 0.924 11 O -0.242 6.242 12 C 0.022 3.978 13 C 0.004 3.996 14 C -0.496 4.496 15 H 0.095 0.905 16 C -0.120 4.120 17 N -0.538 5.538 18 Si 0.709 3.291 19 H -0.209 1.209 20 H -0.225 1.225 21 H -0.189 1.189 22 C -0.239 4.239 23 C -0.217 4.217 24 H 0.028 0.972 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.083 8.999 -10.300 13.835 hybrid contribution 0.581 -0.582 -1.288 1.528 sum 2.665 8.417 -11.588 14.568 Atomic orbital electron populations 1.22153 0.87639 1.01931 0.99558 1.60209 1.07633 1.12259 1.49296 1.21642 0.96051 0.90681 0.93218 0.89660 1.23009 1.01781 0.98692 0.98914 1.22505 0.85001 0.95483 0.98378 1.87906 1.28438 1.87456 1.26267 1.23251 1.02523 0.95733 0.82583 1.22553 0.95926 0.94183 0.86756 0.92374 1.88197 1.34003 1.79995 1.21997 1.22267 0.84900 0.94393 0.96255 1.19329 0.94090 0.98691 0.87451 1.20042 0.93739 0.92730 1.43109 0.90542 1.24856 0.95235 0.97557 0.94396 1.69884 1.23228 1.10838 1.49867 0.86908 0.83664 0.79641 0.78888 1.20929 1.22470 1.18876 1.22982 0.97036 0.98168 1.05700 1.22877 1.04429 0.92683 1.01757 0.97178 0.91460 0.91366 0.84811 0.90861 0.90724 0.89025 0.93022 0.92257 0.88756 0.96221 0.94154 0.93019 0.91118 0.89192 0.89493 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.50 60.06 0.63 1.18 16 2 N -0.67 -11.28 6.54 -113.81 -0.74 -12.03 16 3 C 0.09 1.46 2.23 -67.53 -0.15 1.31 16 4 H 0.09 1.38 7.80 -51.93 -0.41 0.97 16 5 C -0.18 -2.15 5.40 -26.59 -0.14 -2.29 16 6 C 0.06 0.71 6.84 37.20 0.25 0.97 16 7 O -0.38 -5.36 10.76 -35.23 -0.38 -5.74 16 8 C 0.04 0.54 6.37 37.21 0.24 0.78 16 9 C 0.07 1.14 2.44 -26.59 -0.06 1.07 16 10 H 0.06 1.02 7.80 -51.93 -0.41 0.62 16 11 O -0.32 -7.08 9.32 -35.23 -0.33 -7.41 16 12 C 0.10 2.15 5.69 37.16 0.21 2.36 16 13 C 0.01 0.13 1.24 -155.66 -0.19 -0.06 16 14 C -0.46 -13.21 8.83 -34.44 -0.30 -13.52 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 16 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16 17 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 18 Si 0.88 22.49 24.93 -169.99 -4.24 18.25 16 19 H -0.28 -7.06 7.09 56.52 0.40 -6.66 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 21 H -0.26 -6.41 5.54 56.52 0.31 -6.09 16 22 C -0.20 -4.39 7.53 -26.74 -0.20 -4.59 16 23 C -0.18 -3.78 9.88 -26.74 -0.26 -4.04 16 24 H 0.01 0.12 7.54 -51.93 -0.39 -0.27 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 27 H 0.33 5.03 8.52 -39.29 -0.33 4.70 16 28 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.07 0.76 7.57 -51.93 -0.39 0.36 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.35 7.66 -51.93 -0.40 0.95 16 34 H 0.02 0.38 7.45 -51.93 -0.39 -0.01 16 35 H 0.04 0.91 6.43 -51.93 -0.33 0.58 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.09 2.05 7.04 -51.93 -0.37 1.69 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 40 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -32.09 314.93 -7.11 -39.20 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.86 Total: 4.80 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.09 Total: -14.56 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.03 Total: -39.29 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.71 Total: -13.15 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.24 Total: 18.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.09 -7.11 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686574475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.439 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds