Wall clock time and date at job start Mon Mar 30 2020 04:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 110.99891 * 2 1 4 4 H 1.08999 * 109.54162 * 34.81899 * 3 2 1 5 5 C 1.53178 * 109.61616 * 274.59618 * 3 2 1 6 6 C 1.53094 * 109.16044 * 183.10952 * 5 3 2 7 7 O 1.42893 * 109.41786 * 57.61162 * 6 5 3 8 8 C 1.42906 * 114.09594 * 298.84155 * 7 6 5 9 9 C 1.53089 * 109.41986 * 61.15563 * 8 7 6 10 10 H 1.08998 * 109.52616 * 182.48752 * 9 8 7 11 11 O 1.42899 * 109.51898 * 62.36104 * 9 8 7 12 12 C 1.42897 * 114.00042 * 87.71399 * 11 9 8 13 13 C 1.53006 * 109.47068 * 181.29773 * 12 11 9 14 14 C 1.50701 * 115.54730 * 279.80819 * 13 12 11 15 15 H 1.07996 * 119.99744 * 144.25973 * 14 13 12 16 16 C 1.37879 * 120.00161 * 324.26461 * 14 13 12 17 17 N 1.31512 * 119.99729 * 338.08816 * 16 14 13 18 18 Si 1.86800 * 119.99827 * 158.08469 * 16 14 13 19 19 H 1.48500 * 109.47480 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46784 * 120.00138 * 18 16 14 21 21 H 1.48502 * 109.46934 * 239.99744 * 18 16 14 22 22 C 1.52999 * 117.50141 * 134.10383 * 13 12 11 23 23 C 1.52994 * 117.50087 * 65.47972 * 13 12 11 24 24 H 1.09001 * 109.47102 * 60.00132 * 1 2 3 25 25 H 1.09002 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47707 * 300.00484 * 1 2 3 27 27 H 1.00897 * 111.00455 * 236.04693 * 2 1 3 28 28 H 1.09000 * 109.52110 * 303.01779 * 5 3 2 29 29 H 1.09004 * 109.51983 * 63.14229 * 5 3 2 30 30 H 1.09005 * 109.47587 * 177.59678 * 6 5 3 31 31 H 1.09005 * 109.47891 * 297.61143 * 6 5 3 32 32 H 1.09010 * 109.47991 * 301.17029 * 8 7 6 33 33 H 1.09000 * 109.47914 * 181.14431 * 8 7 6 34 34 H 1.09001 * 109.47143 * 301.28986 * 12 11 9 35 35 H 1.08996 * 109.47367 * 61.29676 * 12 11 9 36 36 H 0.97004 * 119.99678 * 184.55116 * 17 16 14 37 37 H 1.09007 * 117.49592 * 0.02562 * 22 13 12 38 38 H 1.08999 * 117.50167 * 145.01435 * 22 13 12 39 39 H 1.09000 * 117.49846 * 214.97975 * 23 13 12 40 40 H 1.09004 * 117.49888 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3387 2.0140 0.5865 5 6 2.0717 1.8930 -1.4382 6 6 2.6934 3.2920 -1.4331 7 8 3.9852 3.2355 -0.8248 8 6 3.9707 2.7998 0.5361 9 6 3.4003 1.3810 0.6102 10 1 3.3473 1.0636 1.6516 11 8 4.2450 0.4882 -0.1188 12 6 5.3161 -0.0588 0.6529 13 6 6.1692 -0.9695 -0.2325 14 6 5.6216 -2.3553 -0.4578 15 1 5.7581 -2.8412 -1.4125 16 6 4.9463 -3.0028 0.5550 17 7 5.1347 -2.6430 1.8058 18 14 3.7636 -4.3910 0.1503 19 1 3.7298 -4.5999 -1.3195 20 1 4.2169 -5.6378 0.8178 21 1 2.4035 -4.0385 0.6311 22 6 7.6891 -0.8152 -0.1477 23 6 6.9373 -0.3176 -1.3839 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8306 -0.5261 -0.7813 28 1 2.6885 1.2224 -2.0366 29 1 1.0686 1.9407 -1.8621 30 1 2.7895 3.6508 -2.4579 31 1 2.0549 3.9715 -0.8685 32 1 3.3491 3.4728 1.1267 33 1 4.9871 2.8040 0.9299 34 1 5.9333 0.7507 1.0427 35 1 4.9084 -0.6366 1.4823 36 1 4.7112 -3.1407 2.5227 37 1 8.0812 -0.0651 0.5391 38 1 8.2932 -1.7161 -0.2547 39 1 7.0469 -0.8912 -2.3043 40 1 6.8353 0.7602 -1.5105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686574477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:52 Heat of formation + Delta-G solvation = -59.146041 kcal Electronic energy + Delta-G solvation = -20599.320500 eV Core-core repulsion = 17608.278196 eV Total energy + Delta-G solvation = -2991.042304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -39.52233 -36.98553 -35.89986 -34.90876 -32.08524 -31.03939 -29.90648 -25.94045 -25.61985 -24.87442 -23.07408 -22.67854 -21.01828 -19.76128 -19.01121 -16.67665 -16.12065 -15.87789 -15.42037 -15.10934 -14.66356 -14.60958 -14.33014 -13.83045 -13.60462 -13.20287 -12.76997 -12.59229 -12.16205 -11.84231 -11.70330 -11.60830 -11.21742 -11.06408 -10.88430 -10.70077 -10.39489 -10.34884 -10.20762 -10.11958 -9.59066 -9.19315 -9.07211 -8.56332 -8.30291 -8.02039 -7.82954 -6.01101 -3.93238 3.34302 3.44334 3.48046 4.05781 4.44502 4.46961 4.58399 4.96470 5.03582 5.11574 5.17330 5.32995 5.43515 5.53259 5.56159 5.64407 5.68911 5.77939 5.82650 5.89140 5.99798 6.12506 6.17384 6.33367 6.43798 6.50263 6.66952 6.86408 6.93421 7.01959 7.19991 7.30207 7.42133 7.46861 7.66611 7.72889 8.04768 8.45172 8.55488 8.97680 9.61464 11.03060 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.009313 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.837475 B = 3005.786779 C = 4061.523577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.678 5.678 3 C 0.097 3.903 4 H 0.077 0.923 5 C -0.182 4.182 6 C 0.068 3.932 7 O -0.370 6.370 8 C 0.039 3.961 9 C 0.067 3.933 10 H 0.067 0.933 11 O -0.353 6.353 12 C 0.092 3.908 13 C 0.060 3.940 14 C -0.486 4.486 15 H 0.059 0.941 16 C 0.079 3.921 17 N -0.872 5.872 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.201 4.201 23 C -0.200 4.200 24 H 0.015 0.985 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.357 0.643 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.004 0.996 35 H 0.099 0.901 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 9.849 -1.953 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.308 5.308 3 C -0.014 4.014 4 H 0.095 0.905 5 C -0.221 4.221 6 C -0.009 4.009 7 O -0.288 6.288 8 C -0.038 4.038 9 C 0.007 3.993 10 H 0.085 0.915 11 O -0.272 6.272 12 C 0.016 3.984 13 C 0.060 3.940 14 C -0.523 4.523 15 H 0.078 0.922 16 C -0.124 4.124 17 N -0.509 5.509 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.239 4.239 23 C -0.237 4.237 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.177 0.823 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.022 0.978 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.767 9.734 -1.368 12.528 hybrid contribution -0.950 -0.456 -0.630 1.228 sum -8.717 9.278 -1.998 12.886 Atomic orbital electron populations 1.22209 0.88821 1.01591 0.99489 1.60319 1.06277 1.12619 1.51626 1.21626 0.94840 0.90103 0.94822 0.90498 1.22867 1.01030 0.99013 0.99231 1.22424 0.85081 0.95253 0.98178 1.87957 1.27915 1.87046 1.25917 1.23194 1.02353 0.94940 0.83351 1.22532 0.90102 0.89857 0.96790 0.91475 1.87935 1.41467 1.60663 1.37133 1.22397 0.87301 0.92738 0.95916 1.18775 0.87344 0.94159 0.93746 1.20446 1.34521 0.98536 0.98749 0.92233 1.24861 0.95965 0.96912 0.94622 1.69891 1.42232 1.40087 0.98713 0.86646 0.82005 0.81282 0.78686 1.19826 1.21556 1.20419 1.22982 0.99405 1.01087 1.00443 1.22749 1.09435 0.98424 0.93128 0.96617 0.91667 0.92270 0.82332 0.89410 0.91947 0.89351 0.94016 0.93361 0.88754 0.97799 0.88298 0.92915 0.91989 0.90355 0.90981 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.50 60.06 0.63 1.01 16 2 N -0.68 -11.38 6.43 -113.82 -0.73 -12.12 16 3 C 0.10 1.49 2.33 -67.53 -0.16 1.33 16 4 H 0.08 1.04 7.80 -51.93 -0.41 0.64 16 5 C -0.18 -2.57 5.24 -26.59 -0.14 -2.71 16 6 C 0.07 0.91 6.84 37.21 0.25 1.16 16 7 O -0.37 -6.18 10.70 -42.66 -0.46 -6.64 16 8 C 0.04 0.62 6.45 37.20 0.24 0.86 16 9 C 0.07 1.21 2.63 -26.59 -0.07 1.14 16 10 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 11 O -0.35 -7.84 9.19 -42.66 -0.39 -8.23 16 12 C 0.09 2.24 5.38 37.16 0.20 2.44 16 13 C 0.06 1.55 1.98 -155.66 -0.31 1.25 16 14 C -0.49 -13.58 8.98 -34.44 -0.31 -13.89 16 15 H 0.06 1.68 7.91 -52.49 -0.42 1.27 16 16 C 0.08 2.19 5.03 -17.82 -0.09 2.10 16 17 N -0.87 -24.42 11.14 55.43 0.62 -23.80 16 18 Si 0.89 21.34 29.59 -169.99 -5.03 16.31 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.20 -4.80 9.88 -26.73 -0.26 -5.06 16 23 C -0.20 -4.67 9.93 -26.74 -0.27 -4.94 16 24 H 0.02 0.18 7.54 -51.93 -0.39 -0.21 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 27 H 0.36 6.51 8.50 -39.29 -0.33 6.17 16 28 H 0.09 1.48 7.78 -51.93 -0.40 1.07 16 29 H 0.06 0.75 7.58 -51.93 -0.39 0.36 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.09 1.51 7.63 -51.93 -0.40 1.12 16 34 H 0.00 0.09 7.43 -51.93 -0.39 -0.30 16 35 H 0.10 2.65 5.39 -51.93 -0.28 2.37 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.63 16 37 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 38 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -29.41 320.40 -8.19 -37.60 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.74 Total: 7.38 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.28 Total: -15.33 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.11 Total: -35.92 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.85 Total: -14.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.41 -8.19 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686574477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.547 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds