Wall clock time and date at job start Mon Mar 30 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 110.99891 * 2 1 4 4 H 1.08999 * 109.54162 * 34.81899 * 3 2 1 5 5 C 1.53178 * 109.61616 * 274.59618 * 3 2 1 6 6 C 1.53094 * 109.16044 * 183.10952 * 5 3 2 7 7 O 1.42893 * 109.41786 * 57.61162 * 6 5 3 8 8 C 1.42906 * 114.09594 * 298.84155 * 7 6 5 9 9 C 1.53089 * 109.41986 * 61.15563 * 8 7 6 10 10 H 1.08998 * 109.52616 * 182.48752 * 9 8 7 11 11 O 1.42899 * 109.51898 * 62.36104 * 9 8 7 12 12 C 1.42897 * 114.00042 * 87.71399 * 11 9 8 13 13 C 1.53006 * 109.47068 * 181.29773 * 12 11 9 14 14 C 1.50701 * 115.54730 * 279.80819 * 13 12 11 15 15 H 1.07996 * 119.99744 * 144.25973 * 14 13 12 16 16 C 1.37879 * 120.00161 * 324.26461 * 14 13 12 17 17 N 1.31512 * 119.99729 * 338.08816 * 16 14 13 18 18 Si 1.86800 * 119.99827 * 158.08469 * 16 14 13 19 19 H 1.48500 * 109.47480 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46784 * 120.00138 * 18 16 14 21 21 H 1.48502 * 109.46934 * 239.99744 * 18 16 14 22 22 C 1.52999 * 117.50141 * 134.10383 * 13 12 11 23 23 C 1.52994 * 117.50087 * 65.47972 * 13 12 11 24 24 H 1.09001 * 109.47102 * 60.00132 * 1 2 3 25 25 H 1.09002 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47707 * 300.00484 * 1 2 3 27 27 H 1.00897 * 111.00455 * 236.04693 * 2 1 3 28 28 H 1.09000 * 109.52110 * 303.01779 * 5 3 2 29 29 H 1.09004 * 109.51983 * 63.14229 * 5 3 2 30 30 H 1.09005 * 109.47587 * 177.59678 * 6 5 3 31 31 H 1.09005 * 109.47891 * 297.61143 * 6 5 3 32 32 H 1.09010 * 109.47991 * 301.17029 * 8 7 6 33 33 H 1.09000 * 109.47914 * 181.14431 * 8 7 6 34 34 H 1.09001 * 109.47143 * 301.28986 * 12 11 9 35 35 H 1.08996 * 109.47367 * 61.29676 * 12 11 9 36 36 H 0.97004 * 119.99678 * 184.55116 * 17 16 14 37 37 H 1.09007 * 117.49592 * 0.02562 * 22 13 12 38 38 H 1.08999 * 117.50167 * 145.01435 * 22 13 12 39 39 H 1.09000 * 117.49846 * 214.97975 * 23 13 12 40 40 H 1.09004 * 117.49888 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3387 2.0140 0.5865 5 6 2.0717 1.8930 -1.4382 6 6 2.6934 3.2920 -1.4331 7 8 3.9852 3.2355 -0.8248 8 6 3.9707 2.7998 0.5361 9 6 3.4003 1.3810 0.6102 10 1 3.3473 1.0636 1.6516 11 8 4.2450 0.4882 -0.1188 12 6 5.3161 -0.0588 0.6529 13 6 6.1692 -0.9695 -0.2325 14 6 5.6216 -2.3553 -0.4578 15 1 5.7581 -2.8412 -1.4125 16 6 4.9463 -3.0028 0.5550 17 7 5.1347 -2.6430 1.8058 18 14 3.7636 -4.3910 0.1503 19 1 3.7298 -4.5999 -1.3195 20 1 4.2169 -5.6378 0.8178 21 1 2.4035 -4.0385 0.6311 22 6 7.6891 -0.8152 -0.1477 23 6 6.9373 -0.3176 -1.3839 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8306 -0.5261 -0.7813 28 1 2.6885 1.2224 -2.0366 29 1 1.0686 1.9407 -1.8621 30 1 2.7895 3.6508 -2.4579 31 1 2.0549 3.9715 -0.8685 32 1 3.3491 3.4728 1.1267 33 1 4.9871 2.8040 0.9299 34 1 5.9333 0.7507 1.0427 35 1 4.9084 -0.6366 1.4823 36 1 4.7112 -3.1407 2.5227 37 1 8.0812 -0.0651 0.5391 38 1 8.2932 -1.7161 -0.2547 39 1 7.0469 -0.8912 -2.3043 40 1 6.8353 0.7602 -1.5105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686574477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:49 Heat of formation + Delta-G solvation = -78.847655 kcal Electronic energy + Delta-G solvation = -20600.174826 eV Core-core repulsion = 17608.278196 eV Total energy + Delta-G solvation = -2991.896630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80377 -38.76149 -37.18791 -36.50768 -34.18167 -32.18325 -31.21575 -27.90926 -26.96617 -26.60540 -24.26528 -23.85272 -22.91151 -21.06268 -20.97959 -18.41305 -17.51489 -17.31511 -16.86646 -16.49297 -16.49022 -15.95542 -15.67879 -15.49154 -15.06001 -14.69728 -14.27788 -13.95363 -13.61426 -13.36374 -13.17314 -12.91430 -12.76076 -12.74448 -12.52460 -12.25556 -12.23133 -12.07850 -11.67683 -11.56242 -11.20059 -11.05527 -10.81020 -10.53598 -9.99997 -9.72571 -9.22975 -8.09855 -6.08182 1.40392 1.46974 1.55727 2.45262 2.80639 3.00057 3.16472 3.30159 3.76266 3.83243 3.85604 3.99981 4.17118 4.33863 4.40673 4.44547 4.50777 4.53299 4.55616 4.61001 4.65271 4.70621 4.78563 4.92590 4.96751 4.98872 5.02017 5.07017 5.12830 5.27083 5.29882 5.56398 5.61490 5.98776 6.15510 6.28307 6.40748 6.46766 6.78377 6.86182 7.48279 8.93249 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.009313 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.837475 B = 3005.786779 C = 4061.523577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.705 5.705 3 C 0.099 3.901 4 H 0.103 0.897 5 C -0.173 4.173 6 C 0.064 3.936 7 O -0.395 6.395 8 C 0.045 3.955 9 C 0.056 3.944 10 H 0.052 0.948 11 O -0.369 6.369 12 C 0.108 3.892 13 C 0.028 3.972 14 C -0.509 4.509 15 H 0.046 0.954 16 C 0.043 3.957 17 N -0.892 5.892 18 Si 0.944 3.056 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.276 1.276 22 C -0.197 4.197 23 C -0.182 4.182 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.343 0.657 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 11.132 -2.265 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.335 5.335 3 C -0.011 4.011 4 H 0.121 0.879 5 C -0.212 4.212 6 C -0.013 4.013 7 O -0.314 6.314 8 C -0.033 4.033 9 C -0.003 4.003 10 H 0.070 0.930 11 O -0.288 6.288 12 C 0.031 3.969 13 C 0.027 3.973 14 C -0.546 4.546 15 H 0.064 0.936 16 C -0.159 4.159 17 N -0.529 5.529 18 Si 0.770 3.230 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.202 1.202 22 C -0.235 4.235 23 C -0.220 4.220 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.161 0.839 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.028 0.972 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.269 11.031 -1.678 14.506 hybrid contribution -0.510 -0.826 -0.534 1.108 sum -9.779 10.205 -2.213 14.306 Atomic orbital electron populations 1.22249 0.86656 1.02004 1.00931 1.60321 1.08496 1.13415 1.51232 1.21675 0.93472 0.90054 0.95903 0.87871 1.22764 1.01874 0.98800 0.97780 1.22665 0.84166 0.95115 0.99374 1.87924 1.30168 1.86971 1.26296 1.23123 1.02370 0.93987 0.83781 1.22865 0.91220 0.90365 0.95858 0.93037 1.87896 1.41470 1.61742 1.37658 1.22002 0.87707 0.92312 0.94851 1.18949 0.88513 0.94028 0.95766 1.20616 1.35846 0.99837 0.98316 0.93610 1.25445 0.96838 0.99132 0.94449 1.69984 1.42674 1.41016 0.99243 0.85749 0.79992 0.78918 0.78342 1.19774 1.20948 1.20173 1.22971 0.98240 1.01277 1.00981 1.22691 1.07818 0.98798 0.92651 0.94706 0.91907 0.91051 0.83934 0.92785 0.89384 0.87877 0.91046 0.89904 0.89805 0.97248 0.91090 0.92803 0.90520 0.90919 0.90870 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.50 127.69 1.34 2.08 16 2 N -0.70 -23.04 6.43 -514.00 -3.31 -26.35 16 3 C 0.10 2.88 2.33 45.03 0.11 2.98 16 4 H 0.10 2.45 7.80 -2.39 -0.02 2.43 16 5 C -0.17 -4.52 5.24 30.69 0.16 -4.36 16 6 C 0.06 1.50 6.84 72.01 0.49 1.99 16 7 O -0.39 -12.41 10.70 -141.88 -1.52 -13.92 16 8 C 0.04 1.34 6.45 72.01 0.46 1.80 16 9 C 0.06 1.99 2.63 30.68 0.08 2.07 16 10 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 11 O -0.37 -16.54 9.19 -141.88 -1.30 -17.84 16 12 C 0.11 5.31 5.38 71.98 0.39 5.70 16 13 C 0.03 1.46 1.98 -52.93 -0.10 1.35 16 14 C -0.51 -29.01 8.98 25.60 0.23 -28.78 16 15 H 0.05 2.65 7.91 -2.91 -0.02 2.63 16 16 C 0.04 2.38 5.03 84.66 0.43 2.81 16 17 N -0.89 -50.68 11.14 21.45 0.24 -50.44 16 18 Si 0.94 44.36 29.59 68.60 2.03 46.39 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 C -0.20 -9.36 9.88 30.59 0.30 -9.06 16 23 C -0.18 -8.47 9.93 30.59 0.30 -8.17 16 24 H 0.03 0.71 7.54 -2.39 -0.02 0.69 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.54 8.06 -2.39 -0.02 1.52 16 27 H 0.34 12.57 8.50 -89.70 -0.76 11.80 16 28 H 0.05 1.79 7.78 -2.39 -0.02 1.77 16 29 H 0.09 1.83 7.58 -2.38 -0.02 1.81 16 30 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.08 2.63 7.63 -2.39 -0.02 2.61 16 34 H 0.01 0.44 7.43 -2.39 -0.02 0.42 16 35 H 0.07 3.91 5.39 -2.39 -0.01 3.90 16 36 H 0.26 14.18 8.32 -92.70 -0.77 13.40 16 37 H 0.08 3.37 8.08 -2.38 -0.02 3.35 16 38 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 Total: -1.00 -63.36 320.40 0.58 -62.78 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.25 Total: 28.98 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 4.19 Total: -29.59 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.07 Total: -76.79 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -2.82 Total: -31.77 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.36 0.58 -62.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686574477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.067 kcal (2) G-P(sol) polarization free energy of solvation -63.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds