Wall clock time and date at job start Mon Mar 30 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99736 * 2 1 4 4 H 1.08994 * 109.61644 * 325.22124 * 3 2 1 5 5 C 1.53185 * 109.54337 * 85.44550 * 3 2 1 6 6 C 1.53090 * 109.16236 * 176.84573 * 5 3 2 7 7 O 1.42912 * 109.41464 * 302.39155 * 6 5 3 8 8 C 1.42900 * 114.09711 * 61.15690 * 7 6 5 9 9 C 1.53091 * 109.41875 * 298.84370 * 8 7 6 10 10 H 1.09002 * 109.52050 * 297.64117 * 9 8 7 11 11 O 1.42896 * 109.52614 * 177.51624 * 9 8 7 12 12 C 1.42905 * 114.00077 * 89.99624 * 11 9 8 13 13 C 1.52992 * 109.47298 * 184.95412 * 12 11 9 14 14 C 1.50705 * 115.55177 * 294.85941 * 13 12 11 15 15 H 1.07997 * 120.00565 * 99.43048 * 14 13 12 16 16 C 1.37879 * 119.99493 * 279.43963 * 14 13 12 17 17 N 1.31513 * 120.00188 * 5.43641 * 16 14 13 18 18 Si 1.86804 * 119.99937 * 185.44190 * 16 14 13 19 19 H 1.48495 * 109.46966 * 269.99996 * 18 16 14 20 20 H 1.48489 * 109.47205 * 149.99466 * 18 16 14 21 21 H 1.48502 * 109.47003 * 29.99284 * 18 16 14 22 22 C 1.53006 * 117.51877 * 80.55439 * 13 12 11 23 23 C 1.52997 * 117.49947 * 149.18292 * 13 12 11 24 24 H 1.09006 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47157 * 300.00183 * 1 2 3 26 26 H 1.08996 * 109.47155 * 59.99932 * 1 2 3 27 27 H 1.00903 * 110.99556 * 123.95318 * 2 1 3 28 28 H 1.08994 * 109.52070 * 56.94042 * 5 3 2 29 29 H 1.08992 * 109.51854 * 296.75023 * 5 3 2 30 30 H 1.08996 * 109.48287 * 182.40567 * 6 5 3 31 31 H 1.09001 * 109.48118 * 62.37174 * 6 5 3 32 32 H 1.09006 * 109.47757 * 178.86142 * 8 7 6 33 33 H 1.08999 * 109.48687 * 58.83424 * 8 7 6 34 34 H 1.08997 * 109.46810 * 64.95514 * 12 11 9 35 35 H 1.09005 * 109.47076 * 304.95949 * 12 11 9 36 36 H 0.97002 * 119.99954 * 354.99298 * 17 16 14 37 37 H 1.09003 * 117.49944 * 214.97377 * 22 13 12 38 38 H 1.08994 * 117.49625 * 359.97438 * 22 13 12 39 39 H 1.08998 * 117.50118 * 359.97438 * 23 13 12 40 40 H 1.09004 * 117.49657 * 145.00023 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3392 2.0152 -0.5856 5 6 2.0720 1.8909 1.4390 6 6 2.6945 3.2895 1.4359 7 8 3.9864 3.2331 0.8275 8 6 3.9717 2.7992 -0.5340 9 6 3.4004 1.3809 -0.6101 10 1 4.0442 0.6987 -0.0549 11 8 3.3308 0.9668 -1.9759 12 6 4.5091 0.3076 -2.4443 13 6 4.3725 0.0212 -3.9409 14 6 3.2865 -0.9525 -4.3200 15 1 2.3368 -0.5879 -4.6825 16 6 3.5054 -2.3088 -4.2036 17 7 4.6194 -2.7511 -3.6626 18 14 2.2195 -3.5182 -4.8147 19 1 1.2702 -3.8287 -3.7158 20 1 2.8871 -4.7675 -5.2601 21 1 1.4788 -2.9195 -5.9541 22 6 4.6611 1.1698 -4.9097 23 6 5.6531 0.0123 -4.7782 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8305 -0.5261 0.7814 28 1 2.6883 1.2192 2.0364 29 1 1.0689 1.9396 1.8625 30 1 2.7908 3.6468 2.4612 31 1 2.0566 3.9701 0.8721 32 1 4.9881 2.8033 -0.9278 33 1 3.3506 3.4734 -1.1237 34 1 4.6390 -0.6307 -1.9051 35 1 5.3751 0.9473 -2.2742 36 1 5.3181 -2.1267 -3.4118 37 1 4.0655 1.2211 -5.8212 38 1 4.9479 2.1298 -4.4808 39 1 6.5928 0.2109 -4.2628 40 1 5.7100 -0.6979 -5.6032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686574479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:00 Heat of formation + Delta-G solvation = -68.176159 kcal Electronic energy + Delta-G solvation = -20172.663620 eV Core-core repulsion = 17181.229741 eV Total energy + Delta-G solvation = -2991.433879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 4.85 seconds Orbital eigenvalues (eV) -39.69637 -37.39464 -36.15075 -35.33085 -31.76051 -31.27933 -29.97911 -26.03891 -25.69755 -24.59991 -23.06255 -22.77101 -21.20605 -20.42124 -19.29403 -16.76471 -16.67741 -16.15632 -15.63115 -15.38036 -14.79030 -14.60304 -14.05403 -13.64866 -13.61196 -13.36869 -13.10252 -12.64140 -12.50872 -12.24787 -11.73895 -11.66531 -11.62921 -11.21419 -11.01924 -10.72355 -10.62219 -10.40444 -10.10641 -10.01059 -9.90719 -9.46293 -8.73809 -8.37337 -8.31014 -8.16598 -8.09370 -6.21277 -3.91306 3.51708 3.55208 3.70420 3.73710 4.24443 4.32565 4.63117 4.77465 4.85813 4.97781 5.17350 5.25224 5.30640 5.43225 5.45925 5.48979 5.56776 5.59986 5.67529 5.73351 5.84508 5.95072 6.06980 6.11226 6.17522 6.21985 6.31326 6.52706 6.63486 6.69192 6.91963 7.11087 7.19340 7.30168 7.36688 7.56960 8.14997 8.41667 8.58774 9.01921 9.80408 11.18232 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.007150 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.921695 B = 3915.069421 C = 4896.421746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.670 5.670 3 C 0.093 3.907 4 H 0.084 0.916 5 C -0.184 4.184 6 C 0.064 3.936 7 O -0.381 6.381 8 C 0.039 3.961 9 C 0.068 3.932 10 H 0.060 0.940 11 O -0.340 6.340 12 C 0.106 3.894 13 C 0.026 3.974 14 C -0.551 4.551 15 H 0.052 0.948 16 C 0.026 3.974 17 N -0.913 5.913 18 Si 1.069 2.931 19 H -0.288 1.288 20 H -0.287 1.287 21 H -0.290 1.290 22 C -0.191 4.191 23 C -0.179 4.179 24 H 0.067 0.933 25 H 0.013 0.987 26 H 0.066 0.934 27 H 0.338 0.662 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.271 0.729 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 9.413 9.849 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.298 5.298 3 C -0.018 4.018 4 H 0.102 0.898 5 C -0.224 4.224 6 C -0.014 4.014 7 O -0.300 6.300 8 C -0.038 4.038 9 C 0.008 3.992 10 H 0.078 0.922 11 O -0.258 6.258 12 C 0.029 3.971 13 C 0.026 3.974 14 C -0.589 4.589 15 H 0.070 0.930 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.899 3.101 19 H -0.215 1.215 20 H -0.213 1.213 21 H -0.216 1.216 22 C -0.228 4.228 23 C -0.217 4.217 24 H 0.085 0.915 25 H 0.031 0.969 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.814 7.767 9.025 12.843 hybrid contribution 0.197 1.800 1.091 2.114 sum -4.616 9.567 10.116 14.669 Atomic orbital electron populations 1.22180 0.87866 1.01843 0.99709 1.60239 1.07427 1.12524 1.49633 1.21689 0.96264 0.90437 0.93398 0.89819 1.23004 1.01772 0.98794 0.98809 1.22506 0.85042 0.95402 0.98438 1.87921 1.28364 1.87420 1.26261 1.23201 1.02581 0.95556 0.82499 1.22503 0.95646 0.94360 0.86697 0.92171 1.88063 1.38837 1.76472 1.22422 1.22256 0.84303 0.93849 0.96670 1.19011 0.95530 0.96140 0.86731 1.21191 0.99055 0.91459 1.47164 0.92998 1.25698 1.00599 0.97258 0.94253 1.70713 1.07098 1.39081 1.37952 0.83543 0.74936 0.75466 0.76200 1.21492 1.21282 1.21646 1.22791 1.04535 0.92381 1.03087 1.22803 0.93153 1.01425 1.04299 0.91455 0.96894 0.91561 0.84457 0.90750 0.90764 0.88955 0.93079 0.88697 0.92400 0.93297 0.97057 0.91794 0.90211 0.91547 0.91638 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.50 60.07 0.63 1.08 16 2 N -0.67 -10.73 6.54 -113.81 -0.74 -11.47 16 3 C 0.09 1.39 2.23 -67.53 -0.15 1.24 16 4 H 0.08 1.30 7.80 -51.93 -0.41 0.89 16 5 C -0.18 -2.11 5.40 -26.59 -0.14 -2.25 16 6 C 0.06 0.71 6.84 37.20 0.25 0.96 16 7 O -0.38 -5.44 10.77 -35.23 -0.38 -5.82 16 8 C 0.04 0.60 6.46 37.20 0.24 0.84 16 9 C 0.07 1.19 2.44 -26.59 -0.06 1.12 16 10 H 0.06 1.09 7.83 -51.93 -0.41 0.69 16 11 O -0.34 -7.53 9.85 -35.23 -0.35 -7.88 16 12 C 0.11 2.48 5.41 37.15 0.20 2.68 16 13 C 0.03 0.67 1.12 -155.66 -0.17 0.50 16 14 C -0.55 -15.86 8.75 -34.44 -0.30 -16.16 16 15 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.03 0.76 5.42 -17.82 -0.10 0.66 16 17 N -0.91 -27.41 13.61 55.43 0.75 -26.65 16 18 Si 1.07 25.95 29.91 -169.99 -5.08 20.86 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.19 -4.32 9.96 -26.73 -0.27 -4.58 16 23 C -0.18 -4.21 8.97 -26.73 -0.24 -4.45 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.01 0.14 7.54 -51.93 -0.39 -0.25 16 26 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 27 H 0.34 4.88 8.52 -39.29 -0.33 4.54 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.44 7.86 -51.93 -0.41 1.03 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 1.26 7.63 -51.93 -0.40 0.86 16 35 H 0.01 0.24 7.81 -51.93 -0.41 -0.17 16 36 H 0.27 8.05 6.08 -40.82 -0.25 7.80 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -31.65 323.22 -7.85 -39.51 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.82 Total: 4.94 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -0.11 Total: -18.35 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.01 Total: -38.12 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.73 Total: -13.70 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.65 -7.85 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686574479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.667 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.85 seconds