Wall clock time and date at job start Mon Mar 30 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47091 * 300.00206 * 3 2 1 6 6 H 1.48498 * 109.47004 * 60.00435 * 3 2 1 7 7 C 1.37881 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47193 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46917 * 55.00182 * 12 11 10 14 14 N 1.46903 * 109.47265 * 295.00126 * 12 11 10 15 15 C 1.50698 * 109.47138 * 174.99948 * 12 11 10 16 16 O 1.21275 * 119.99984 * 100.00106 * 15 12 11 17 17 N 1.34776 * 119.99999 * 280.00044 * 15 12 11 18 18 N 1.36601 * 120.00189 * 174.98758 * 17 15 12 19 19 C 1.48538 * 111.00309 * 117.91831 * 18 17 15 20 20 C 1.54930 * 103.22695 * 159.72112 * 19 18 17 21 21 C 1.54588 * 102.92759 * 322.58973 * 20 19 18 22 22 C 1.47897 * 111.00393 * 235.31959 * 18 17 15 23 23 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47325 * 59.99769 * 9 7 2 25 25 H 1.09007 * 109.47015 * 300.00010 * 9 7 2 26 26 H 1.09000 * 109.47111 * 60.00384 * 10 9 7 27 27 H 1.08999 * 109.47568 * 299.99704 * 10 9 7 28 28 H 1.09000 * 109.47127 * 59.99989 * 11 10 9 29 29 H 1.08999 * 109.46737 * 300.00354 * 11 10 9 30 30 H 1.00897 * 111.00033 * 176.04585 * 14 12 11 31 31 H 1.00893 * 110.99481 * 299.99758 * 14 12 11 32 32 H 0.97003 * 120.00620 * 354.99000 * 17 15 12 33 33 H 1.08995 * 110.66830 * 278.16473 * 19 18 17 34 34 H 1.09004 * 110.65991 * 41.29083 * 19 18 17 35 35 H 1.09003 * 110.72565 * 204.23126 * 20 19 18 36 36 H 1.09003 * 110.72219 * 80.95473 * 20 19 18 37 37 H 1.09000 * 110.31100 * 263.04165 * 21 20 19 38 38 H 1.08998 * 110.30983 * 140.86672 * 21 20 19 39 39 H 1.08997 * 109.91753 * 333.50817 * 22 18 17 40 40 H 1.08999 * 109.92154 * 94.60359 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4801 -4.9872 -0.0033 12 6 2.4743 -6.1500 -0.0050 13 1 3.1591 -6.0438 0.8365 14 7 3.2366 -6.1408 -1.2607 15 6 1.7250 -7.4517 0.1183 16 8 1.5120 -8.1245 -0.8679 17 7 1.2916 -7.8681 1.3247 18 7 0.5249 -8.9943 1.4236 19 6 1.2079 -10.0337 2.2358 20 6 0.0465 -10.9606 2.6745 21 6 -1.1101 -9.9677 2.9317 22 6 -0.7479 -8.7096 2.1208 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6239 -2.5575 0.8881 26 1 2.8718 -3.6052 0.8873 27 1 2.8718 -3.6036 -0.8927 28 1 0.8532 -5.0444 -0.8931 29 1 0.8538 -5.0453 0.8869 30 1 3.9442 -6.8600 -1.2595 31 1 2.6237 -6.2380 -2.0563 32 1 1.5241 -7.3681 2.1227 33 1 1.9301 -10.5817 1.6308 34 1 1.6922 -9.5866 3.1040 35 1 0.3048 -11.4967 3.5878 36 1 -0.2131 -11.6572 1.8774 37 1 -1.1742 -9.7282 3.9931 38 1 -2.0531 -10.3860 2.5798 39 1 -0.6220 -7.8593 2.7911 40 1 -1.5304 -8.4954 1.3928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686769197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:09 Heat of formation + Delta-G solvation = -24.336532 kcal Electronic energy + Delta-G solvation = -18878.671942 eV Core-core repulsion = 15921.431843 eV Total energy + Delta-G solvation = -2957.240099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36958 -38.58628 -35.63636 -34.36332 -33.31552 -31.33730 -29.53136 -29.27088 -27.67987 -24.98125 -22.77734 -21.68610 -21.26964 -20.32641 -19.99439 -17.84735 -17.23998 -16.32451 -15.99924 -15.75571 -15.14174 -14.62201 -14.43553 -14.08022 -13.88809 -13.48317 -13.13466 -12.89292 -12.73794 -12.37379 -11.76760 -11.74591 -11.60654 -11.47142 -11.13860 -10.97293 -10.75261 -10.56802 -10.41214 -10.13814 -9.60147 -9.36090 -9.21567 -9.12591 -9.01711 -8.56577 -8.29191 -5.94715 -3.96218 2.58213 2.70405 3.34409 3.41814 3.46552 3.96945 4.35460 4.46648 4.51081 4.61790 4.69887 4.84127 4.87047 5.07043 5.17575 5.31432 5.40482 5.41207 5.42058 5.43209 5.58747 5.66760 5.76268 5.94368 6.13281 6.29553 6.45159 6.83094 7.02039 7.07263 7.15877 7.25728 7.35737 7.52929 7.76077 7.91405 8.07107 8.44002 8.50472 9.11779 9.67576 11.16775 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.003610 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.423619 B = 7754.661382 C = 8324.244090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.083 3.917 13 H 0.100 0.900 14 N -0.809 5.809 15 C 0.499 3.501 16 O -0.525 6.525 17 N -0.589 5.589 18 N -0.272 5.272 19 C 0.013 3.987 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.013 3.987 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.338 0.662 31 H 0.351 0.649 32 H 0.382 0.618 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -20.752 7.288 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.035 4.035 13 H 0.118 0.882 14 N -0.338 5.338 15 C 0.284 3.716 16 O -0.398 6.398 17 N -0.336 5.336 18 N -0.089 5.089 19 C -0.115 4.115 20 C -0.161 4.161 21 C -0.169 4.169 22 C -0.115 4.115 23 H 0.068 0.932 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.220 0.780 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.137 -20.496 6.194 21.442 hybrid contribution 0.100 0.397 1.271 1.336 sum 1.237 -20.099 7.466 21.477 Atomic orbital electron populations 1.69978 1.06056 1.26344 1.51349 1.25037 0.94830 0.99240 0.95520 0.86561 0.80192 0.83916 0.77487 1.19705 1.21071 1.21140 1.21325 0.93123 0.91091 1.49857 0.92589 1.19128 0.94118 0.91653 0.96935 1.21542 0.98764 0.92263 1.01181 1.21650 0.96508 0.93926 1.02027 1.21754 0.95845 0.90481 0.95393 0.88241 1.59072 1.17296 1.54174 1.03254 1.22596 0.78849 0.88186 0.81925 1.90657 1.55972 1.56580 1.36566 1.45908 1.53379 1.24427 1.09846 1.65905 0.99093 0.97604 1.46254 1.23774 0.97621 0.93775 0.96336 1.22454 0.94314 0.97566 1.01763 1.22397 0.99476 0.95063 0.99985 1.23418 0.92905 0.97822 0.97342 0.93177 0.96739 0.97005 0.93706 0.91756 0.91803 0.92011 0.84947 0.83440 0.77960 0.89422 0.92799 0.90512 0.90285 0.91050 0.90427 0.92340 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -2.03 5.04 -26.73 -0.13 -2.16 16 11 C -0.10 -1.70 4.84 -26.73 -0.13 -1.83 16 12 C 0.08 1.13 3.15 -68.87 -0.22 0.91 16 13 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 14 N -0.81 -11.13 8.44 -5.65 -0.05 -11.17 16 15 C 0.50 7.14 7.17 -10.99 -0.08 7.06 16 16 O -0.52 -9.36 16.58 5.56 0.09 -9.27 16 17 N -0.59 -6.95 4.74 31.22 0.15 -6.80 16 18 N -0.27 -3.18 5.15 -110.09 -0.57 -3.75 16 19 C 0.01 0.11 6.85 -1.90 -0.01 0.10 16 20 C -0.12 -0.86 7.06 -24.88 -0.18 -1.04 16 21 C -0.13 -0.94 6.93 -25.37 -0.18 -1.11 16 22 C 0.01 0.13 6.92 -2.75 -0.02 0.11 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.34 4.02 9.06 -39.29 -0.36 3.66 16 31 H 0.35 5.06 8.58 -39.30 -0.34 4.72 16 32 H 0.38 3.58 8.73 -185.15 -1.62 1.97 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 7.91 -51.93 -0.41 0.12 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -33.63 330.50 -9.33 -42.96 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.16 Total: 3.99 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.49 Total: -11.24 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.27 Total: -48.31 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.63 -9.33 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686769197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.628 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds